Wall clock time and date at job start Wed Apr 1 2020 06:01:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50703 * 109.47011 * 2 1 4 4 O 1.34253 * 126.52514 * 274.70761 * 3 2 1 5 5 C 1.34048 * 108.22401 * 180.02562 * 4 3 2 6 6 N 1.29932 * 109.24788 * 0.02562 * 5 4 3 7 7 C 1.36067 * 108.47673 * 359.97438 * 6 5 4 8 8 C 1.47419 * 126.45313 * 179.97438 * 7 6 5 9 9 O 1.21616 * 120.00140 * 173.94337 * 8 7 6 10 10 N 1.34778 * 119.99557 * 353.94112 * 8 7 6 11 11 C 1.46920 * 120.63354 * 6.44790 * 10 8 7 12 12 C 1.53188 * 108.77536 * 233.58126 * 11 10 8 13 13 C 1.53039 * 109.31466 * 305.36605 * 12 11 10 14 14 C 1.53040 * 109.53868 * 61.36455 * 13 12 11 15 15 C 1.46929 * 120.62531 * 186.16360 * 10 8 7 16 16 H 1.09001 * 109.58522 * 246.19941 * 15 10 8 17 17 C 1.52994 * 109.58949 * 6.62999 * 15 10 8 18 18 H 1.08994 * 109.87375 * 303.13800 * 17 15 10 19 19 C 1.54333 * 109.88185 * 64.15404 * 17 15 10 20 20 C 1.55397 * 102.82630 * 141.51847 * 19 17 15 21 21 C 1.54915 * 101.66906 * 324.65856 * 20 19 17 22 22 N 1.47022 * 109.88404 * 182.12101 * 17 15 10 23 23 C 1.36935 * 125.64856 * 61.60492 * 22 17 15 24 24 H 1.08003 * 120.00052 * 6.80296 * 23 22 17 25 25 C 1.38814 * 120.00282 * 186.80609 * 23 22 17 26 26 N 1.31616 * 119.99616 * 359.97438 * 25 23 22 27 27 Si 1.86798 * 120.00358 * 180.02562 * 25 23 22 28 28 H 1.48507 * 109.47168 * 89.99643 * 27 25 23 29 29 H 1.48494 * 109.47463 * 209.99651 * 27 25 23 30 30 H 1.48499 * 109.47029 * 330.00101 * 27 25 23 31 31 H 1.08999 * 109.47457 * 299.99545 * 1 2 3 32 32 H 1.09003 * 109.47130 * 60.00101 * 1 2 3 33 33 H 1.09008 * 109.47210 * 179.97438 * 1 2 3 34 34 H 1.08999 * 109.47281 * 239.99929 * 2 1 3 35 35 H 1.09003 * 109.47130 * 119.99898 * 2 1 3 36 36 H 1.08008 * 125.38078 * 180.02562 * 5 4 3 37 37 H 1.09003 * 109.58654 * 353.36967 * 11 10 8 38 38 H 1.09000 * 109.58983 * 113.65302 * 11 10 8 39 39 H 1.09002 * 109.49747 * 65.31617 * 12 11 10 40 40 H 1.09006 * 109.49666 * 185.37698 * 12 11 10 41 41 H 1.09001 * 109.46008 * 181.38594 * 13 12 11 42 42 H 1.09000 * 109.46006 * 301.35138 * 13 12 11 43 43 H 1.09007 * 109.49562 * 58.58633 * 14 13 12 44 44 H 1.08997 * 109.49360 * 178.65163 * 14 13 12 45 45 H 1.08994 * 110.71624 * 259.96972 * 19 17 15 46 46 H 1.08995 * 110.71909 * 23.24778 * 19 17 15 47 47 H 1.09000 * 111.04045 * 206.52870 * 20 19 17 48 48 H 1.09000 * 110.92964 * 82.74655 * 20 19 17 49 49 H 1.08996 * 110.36805 * 278.08713 * 21 20 19 50 50 H 1.08998 * 110.36626 * 155.75969 * 21 20 19 51 51 H 0.97011 * 120.00064 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 2.2151 2.2037 -1.0752 5 6 2.6724 3.3919 -0.6558 6 7 2.7810 3.3763 0.6389 7 6 2.3877 2.1543 1.0899 8 6 2.3540 1.7083 2.4946 9 8 1.8772 0.6259 2.7777 10 7 2.8518 2.5000 3.4651 11 6 3.3018 3.8650 3.1604 12 6 4.7389 4.0342 3.6631 13 6 4.8022 3.6683 5.1477 14 6 4.3952 2.2046 5.3319 15 6 2.9489 2.0166 4.8492 16 1 2.2718 2.5879 5.4842 17 6 2.5773 0.5334 4.9018 18 1 1.5778 0.3872 4.4923 19 6 3.6011 -0.2931 4.0952 20 6 3.7654 -1.5753 4.9577 21 6 3.6419 -1.0055 6.3929 22 7 2.6232 0.0554 6.2913 23 6 1.8487 0.5192 7.3209 24 1 1.0538 1.2234 7.1240 25 6 2.0852 0.0846 8.6179 26 7 3.0536 -0.7739 8.8578 27 14 1.0283 0.7168 10.0223 28 1 -0.1438 -0.1774 10.2012 29 1 1.8287 0.7398 11.2728 30 1 0.5594 2.0906 9.7093 31 1 -0.3634 0.5137 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0277 -0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 2.9128 4.2300 -1.2933 37 1 3.2698 4.0283 2.0831 38 1 2.6512 4.5840 3.6583 39 1 5.4015 3.3784 3.0982 40 1 5.0515 5.0699 3.5294 41 1 5.8188 3.8115 5.5140 42 1 4.1208 4.3079 5.7087 43 1 5.0611 1.5660 4.7513 44 1 4.4636 1.9380 6.3866 45 1 3.2079 -0.5371 3.1084 46 1 4.5482 0.2400 4.0133 47 1 4.7435 -2.0299 4.8007 48 1 2.9677 -2.2887 4.7506 49 1 4.5944 -0.5871 6.7181 50 1 3.3127 -1.7827 7.0826 51 1 3.2187 -1.0780 9.7641 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025216771.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:01:09 Heat of formation + Delta-G solvation = 34.578496 kcal Electronic energy + Delta-G solvation = -33537.707682 eV Core-core repulsion = 29440.360338 eV Total energy + Delta-G solvation = -4097.347344 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -44.44814 -41.77054 -38.85844 -38.12883 -35.99868 -35.07540 -34.46404 -33.67239 -32.46860 -31.12510 -30.26035 -28.60815 -26.67779 -26.22012 -25.16444 -24.41031 -24.08346 -22.63442 -22.21953 -21.52987 -21.08823 -19.95563 -18.94944 -18.18287 -17.80109 -17.33018 -16.89516 -16.68858 -16.32999 -16.06289 -15.91123 -15.70728 -15.43763 -15.22573 -14.96956 -14.76606 -14.37980 -14.25416 -14.18516 -13.86877 -13.53622 -13.44571 -13.17275 -13.10583 -12.87595 -12.76152 -12.62552 -12.51827 -12.42398 -12.30872 -12.02870 -12.01012 -11.84550 -11.79390 -11.67263 -11.37632 -11.20834 -11.18352 -10.73636 -10.58429 -10.14924 -9.88657 -9.36622 -8.71154 -7.76571 -5.13777 0.13295 1.10723 1.43908 1.45560 1.53908 1.61012 2.04210 2.30557 2.52484 3.09871 3.36045 3.60608 3.66510 3.83656 3.90116 3.97089 4.03213 4.14373 4.16796 4.23511 4.28325 4.32895 4.34886 4.39434 4.45317 4.58635 4.62782 4.69811 4.79834 4.80737 4.89319 4.91427 4.98248 5.02515 5.06451 5.07231 5.17705 5.18305 5.26056 5.27335 5.29932 5.35388 5.47773 5.51107 5.53978 5.71588 5.73362 5.84191 5.94763 6.29490 6.44010 6.64583 7.15289 7.24874 7.86837 8.53692 9.30137 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013666 B = 0.003881 C = 0.003471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2048.451141 B = 7212.086216 C = 8065.899842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.048 4.048 3 C 0.047 3.953 4 O -0.195 6.195 5 C 0.201 3.799 6 N -0.488 5.488 7 C -0.089 4.089 8 C 0.577 3.423 9 O -0.534 6.534 10 N -0.586 5.586 11 C 0.057 3.943 12 C -0.116 4.116 13 C -0.118 4.118 14 C -0.109 4.109 15 C 0.147 3.853 16 H 0.039 0.961 17 C 0.162 3.838 18 H 0.057 0.943 19 C -0.108 4.108 20 C -0.138 4.138 21 C 0.175 3.825 22 N -0.611 5.611 23 C -0.226 4.226 24 H 0.069 0.931 25 C -0.062 4.062 26 N -0.947 5.947 27 Si 0.970 3.030 28 H -0.288 1.288 29 H -0.293 1.293 30 H -0.273 1.273 31 H 0.038 0.962 32 H 0.067 0.933 33 H 0.082 0.918 34 H 0.109 0.891 35 H 0.099 0.901 36 H 0.307 0.693 37 H 0.167 0.833 38 H 0.052 0.948 39 H 0.059 0.941 40 H 0.097 0.903 41 H 0.070 0.930 42 H 0.054 0.946 43 H 0.061 0.939 44 H 0.043 0.957 45 H 0.092 0.908 46 H 0.057 0.943 47 H 0.075 0.925 48 H 0.055 0.945 49 H -0.011 1.011 50 H 0.049 0.951 51 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.024 9.577 -24.717 26.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.085 4.085 3 C -0.010 4.010 4 O -0.082 6.082 5 C -0.026 4.026 6 N -0.217 5.217 7 C -0.207 4.207 8 C 0.367 3.633 9 O -0.413 6.413 10 N -0.318 5.318 11 C -0.065 4.065 12 C -0.154 4.154 13 C -0.156 4.156 14 C -0.148 4.148 15 C 0.042 3.958 16 H 0.058 0.942 17 C 0.056 3.944 18 H 0.074 0.926 19 C -0.145 4.145 20 C -0.176 4.176 21 C 0.050 3.950 22 N -0.336 5.336 23 C -0.355 4.355 24 H 0.086 0.914 25 C -0.255 4.255 26 N -0.597 5.597 27 Si 0.799 3.201 28 H -0.215 1.215 29 H -0.219 1.219 30 H -0.199 1.199 31 H 0.057 0.943 32 H 0.086 0.914 33 H 0.101 0.899 34 H 0.127 0.873 35 H 0.117 0.883 36 H 0.322 0.678 37 H 0.183 0.817 38 H 0.070 0.930 39 H 0.078 0.922 40 H 0.115 0.885 41 H 0.089 0.911 42 H 0.073 0.927 43 H 0.079 0.921 44 H 0.062 0.938 45 H 0.110 0.890 46 H 0.075 0.925 47 H 0.094 0.906 48 H 0.074 0.926 49 H 0.007 0.993 50 H 0.068 0.932 51 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 1.948 9.502 -23.985 25.873 hybrid contribution -0.604 -0.099 1.458 1.582 sum 1.344 9.403 -22.527 24.448 Atomic orbital electron populations 1.21652 0.92766 1.03521 1.01659 1.20431 0.97366 0.84884 1.05791 1.23885 0.98235 0.95679 0.83219 1.84407 1.64025 1.24033 1.35689 1.29364 0.94403 0.87757 0.91113 1.70048 1.20887 1.19602 1.11165 1.21371 1.11712 0.92675 0.94944 1.17209 0.78937 0.83872 0.83326 1.90756 1.46568 1.22575 1.81380 1.48037 1.61035 1.15456 1.07259 1.23186 0.94609 0.80478 1.08195 1.21786 0.96406 1.02699 0.94517 1.21560 1.01436 0.94847 0.97745 1.21787 0.95297 0.97525 1.00158 1.21768 0.96413 0.97041 0.80599 0.94241 1.21659 0.98854 0.90165 0.83696 0.92588 1.22959 0.97249 0.95329 0.98968 1.22942 1.00671 0.97394 0.96630 1.21330 0.89707 0.90819 0.93171 1.44914 1.42470 1.41091 1.05111 1.19239 1.08934 1.20785 0.86559 0.91361 1.25497 1.00052 1.00721 0.99217 1.70144 1.34028 1.36527 1.19010 0.85201 0.77767 0.78076 0.79069 1.21515 1.21913 1.19863 0.94309 0.91380 0.89945 0.87252 0.88257 0.67796 0.81711 0.92968 0.92201 0.88481 0.91096 0.92733 0.92064 0.93795 0.88963 0.92477 0.90616 0.92642 0.99332 0.93227 0.94571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 9.89 71.98 0.71 -1.83 16 2 C -0.05 -0.91 6.00 29.85 0.18 -0.73 16 3 C 0.05 1.00 6.69 25.19 0.17 1.17 16 4 O -0.20 -3.07 10.73 0.43 0.00 -3.06 16 5 C 0.20 2.32 13.19 130.52 1.72 4.04 16 6 N -0.49 -9.85 7.68 -305.15 -2.34 -12.19 16 7 C -0.09 -2.32 6.75 40.41 0.27 -2.05 16 8 C 0.58 19.28 6.88 86.66 0.60 19.88 16 9 O -0.53 -20.07 8.05 -4.08 -0.03 -20.10 16 10 N -0.59 -19.88 2.93 -798.07 -2.34 -22.21 16 11 C 0.06 1.53 6.34 86.36 0.55 2.08 16 12 C -0.12 -2.80 6.08 30.67 0.19 -2.62 16 13 C -0.12 -3.53 5.88 30.62 0.18 -3.35 16 14 C -0.11 -4.24 4.98 30.82 0.15 -4.09 16 15 C 0.15 6.04 2.69 45.12 0.12 6.16 16 16 H 0.04 1.84 7.93 -2.39 -0.02 1.82 16 17 C 0.16 7.48 2.29 45.34 0.10 7.59 16 18 H 0.06 2.87 5.82 -12.07 -0.07 2.80 16 19 C -0.11 -4.35 4.96 31.87 0.16 -4.19 16 20 C -0.14 -5.86 7.09 32.07 0.23 -5.64 16 21 C 0.17 9.30 5.63 86.86 0.49 9.79 16 22 N -0.61 -33.26 2.65 -668.24 -1.77 -35.03 16 23 C -0.23 -13.28 9.80 84.03 0.82 -12.46 16 24 H 0.07 3.97 7.83 -2.91 -0.02 3.95 16 25 C -0.06 -3.67 5.48 84.86 0.47 -3.20 16 26 N -0.95 -58.64 10.27 21.65 0.22 -58.42 16 27 Si 0.97 47.82 29.55 68.60 2.03 49.84 16 28 H -0.29 -14.01 7.11 99.48 0.71 -13.31 16 29 H -0.29 -14.37 7.11 99.48 0.71 -13.67 16 30 H -0.27 -12.92 7.11 99.48 0.71 -12.21 16 31 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.08 1.30 8.14 -2.38 -0.02 1.28 16 34 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.10 2.40 6.37 -2.39 -0.02 2.38 16 36 H 0.31 -0.46 8.06 -2.91 -0.02 -0.49 16 37 H 0.17 3.95 3.60 -58.93 -0.21 3.74 16 38 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.10 1.78 8.14 -2.38 -0.02 1.76 16 41 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 42 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 43 H 0.06 2.34 5.69 -2.38 -0.01 2.33 16 44 H 0.04 2.06 7.90 -2.39 -0.02 2.04 16 45 H 0.09 3.55 5.63 -3.09 -0.02 3.53 16 46 H 0.06 2.24 5.40 -2.39 -0.01 2.22 16 47 H 0.08 2.80 8.14 -2.39 -0.02 2.78 16 48 H 0.05 2.35 8.14 -2.39 -0.02 2.33 16 49 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 50 H 0.05 2.97 6.35 -2.39 -0.02 2.95 16 51 H 0.24 14.74 8.31 -92.70 -0.77 13.97 16 Total: -1.00 -74.86 380.39 3.55 -71.31 By element: Atomic # 1 Polarization: 18.64 SS G_CDS: 0.68 Total: 19.32 kcal Atomic # 6 Polarization: 3.45 SS G_CDS: 7.11 Total: 10.56 kcal Atomic # 7 Polarization: -121.63 SS G_CDS: -6.23 Total: -127.86 kcal Atomic # 8 Polarization: -23.14 SS G_CDS: -0.03 Total: -23.17 kcal Atomic # 14 Polarization: 47.82 SS G_CDS: 2.03 Total: 49.84 kcal Total: -74.86 3.55 -71.31 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025216771.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.885 kcal (2) G-P(sol) polarization free energy of solvation -74.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.306 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds