Wall clock time and date at job start Wed Apr 1 2020 05:51:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50707 * 109.47012 * 2 1 4 4 N 1.30014 * 127.33824 * 270.14847 * 3 2 1 5 5 O 1.20657 * 112.30688 * 180.27318 * 4 3 2 6 6 C 1.33493 * 113.14853 * 359.73473 * 5 4 3 7 7 C 1.37356 * 106.35010 * 359.97438 * 6 5 4 8 8 C 1.47397 * 128.57002 * 179.97438 * 7 6 5 9 9 O 1.21606 * 119.99888 * 144.71012 * 8 7 6 10 10 N 1.34771 * 119.99991 * 324.71254 * 8 7 6 11 11 C 1.46929 * 120.62894 * 6.02468 * 10 8 7 12 12 C 1.53186 * 108.77470 * 233.58213 * 11 10 8 13 13 C 1.53035 * 109.31876 * 305.36903 * 12 11 10 14 14 C 1.53075 * 109.65983 * 61.29552 * 13 12 11 15 15 C 1.46923 * 120.63347 * 185.99826 * 10 8 7 16 16 H 1.08997 * 109.59396 * 246.34356 * 15 10 8 17 17 C 1.53001 * 109.58316 * 6.63278 * 15 10 8 18 18 H 1.08999 * 109.99479 * 301.65004 * 17 15 10 19 19 C 1.54320 * 109.88785 * 62.74917 * 17 15 10 20 20 C 1.55157 * 102.94330 * 141.60959 * 19 17 15 21 21 C 1.54909 * 101.58006 * 324.49803 * 20 19 17 22 22 N 1.47184 * 109.79425 * 180.53794 * 17 15 10 23 23 C 1.36931 * 125.74036 * 61.63935 * 22 17 15 24 24 H 1.07995 * 120.00197 * 14.90552 * 23 22 17 25 25 C 1.38820 * 120.00320 * 194.90984 * 23 22 17 26 26 N 1.31621 * 119.99643 * 359.97438 * 25 23 22 27 27 Si 1.86798 * 120.00089 * 179.97438 * 25 23 22 28 28 H 1.48503 * 109.47104 * 59.99812 * 27 25 23 29 29 H 1.48496 * 109.47083 * 179.97438 * 27 25 23 30 30 H 1.48501 * 109.47358 * 299.99864 * 27 25 23 31 31 H 1.08999 * 109.47094 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.47130 * 300.00036 * 1 2 3 33 33 H 1.09004 * 109.47163 * 59.99896 * 1 2 3 34 34 H 1.08999 * 109.46996 * 240.00345 * 2 1 3 35 35 H 1.08991 * 109.47144 * 119.99842 * 2 1 3 36 36 H 1.08007 * 126.82455 * 179.97438 * 6 5 4 37 37 H 1.08997 * 109.58779 * 353.37330 * 11 10 8 38 38 H 1.09007 * 109.58429 * 113.65351 * 11 10 8 39 39 H 1.09007 * 109.49829 * 65.32246 * 12 11 10 40 40 H 1.09002 * 109.49749 * 185.40863 * 12 11 10 41 41 H 1.08996 * 109.46154 * 181.38795 * 13 12 11 42 42 H 1.09000 * 109.45679 * 301.35421 * 13 12 11 43 43 H 1.08999 * 109.62413 * 178.83113 * 14 13 12 44 44 H 1.09006 * 109.38857 * 58.72457 * 14 13 12 45 45 H 1.09002 * 110.71928 * 23.24809 * 19 17 15 46 46 H 1.08994 * 110.87221 * 260.04623 * 19 17 15 47 47 H 1.09005 * 111.00179 * 206.42577 * 20 19 17 48 48 H 1.08993 * 111.00543 * 82.57289 * 20 19 17 49 49 H 1.09006 * 110.36348 * 155.84784 * 21 20 19 50 50 H 1.08999 * 110.36949 * 278.05925 * 21 20 19 51 51 H 0.96995 * 119.99348 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2926 2.1652 -1.0337 5 8 2.6868 3.2618 -0.7208 6 6 2.7518 3.4388 0.6008 7 6 2.3292 2.2622 1.1697 8 6 2.2094 1.9236 2.5992 9 8 1.3050 1.2056 2.9803 10 7 3.1022 2.4099 3.4840 11 6 4.1203 3.3819 3.0627 12 6 5.5009 2.8572 3.4690 13 6 5.5055 2.5524 4.9687 14 6 4.4676 1.4704 5.2774 15 6 3.0757 1.9785 4.8882 16 1 2.8031 2.8206 5.5242 17 6 2.0528 0.8537 5.0599 18 1 1.0663 1.1962 4.7473 19 6 2.4734 -0.3711 4.2206 20 6 2.0967 -1.5657 5.1363 21 6 2.4090 -0.9916 6.5407 22 7 2.0131 0.4267 6.4679 23 6 1.6645 1.2137 7.5328 24 1 1.1616 2.1549 7.3670 25 6 1.9576 0.8017 8.8257 26 7 2.5701 -0.3456 9.0278 27 14 1.4826 1.8756 10.2784 28 1 0.0105 2.0711 10.2892 29 1 1.9030 1.2155 11.5404 30 1 2.1561 3.1939 10.1607 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5139 0.8900 33 1 -0.3634 0.5139 -0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8899 36 1 3.0729 4.3301 1.1195 37 1 4.0807 3.5068 1.9806 38 1 3.9337 4.3400 3.5481 39 1 5.7226 1.9468 2.9120 40 1 6.2562 3.6117 3.2488 41 1 6.4942 2.2022 5.2651 42 1 5.2594 3.4575 5.5239 43 1 4.4857 1.2390 6.3424 44 1 4.7001 0.5722 4.7054 45 1 3.5461 -0.3564 4.0277 46 1 1.9152 -0.4111 3.2853 47 1 2.7199 -2.4340 4.9217 48 1 1.0394 -1.8125 5.0413 49 1 1.8246 -1.5099 7.3010 50 1 3.4737 -1.0776 6.7577 51 1 2.7745 -0.6336 9.9312 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025268250.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:51:30 Heat of formation + Delta-G solvation = 88.409591 kcal Electronic energy + Delta-G solvation = -33545.998715 eV Core-core repulsion = 29450.985662 eV Total energy + Delta-G solvation = -4095.013052 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -45.03239 -40.59142 -37.37862 -36.80687 -35.28843 -33.36091 -32.47709 -31.98130 -31.30778 -30.80018 -29.16534 -27.32495 -25.46411 -24.68606 -24.35343 -23.72381 -22.77670 -21.09848 -20.93367 -20.27571 -19.65663 -18.60380 -17.81963 -17.44229 -17.11677 -16.29546 -15.55316 -15.35680 -15.08200 -14.56117 -14.51867 -14.37223 -14.13960 -13.87799 -13.72921 -13.43717 -13.24357 -13.01054 -12.91805 -12.72914 -12.07425 -11.84269 -11.74149 -11.63231 -11.52565 -11.34669 -11.25667 -10.96991 -10.92814 -10.83891 -10.69954 -10.57506 -10.27851 -10.09706 -10.07001 -10.00663 -9.87709 -9.62851 -9.53741 -9.33647 -8.83920 -8.48293 -8.10810 -6.63642 -5.68112 -3.02246 1.03481 1.72858 2.71537 3.06202 3.27598 3.41362 3.46923 3.47217 3.91852 4.17261 4.53689 4.58155 4.76683 4.80519 4.94551 5.04228 5.09876 5.21629 5.26522 5.34913 5.35654 5.45755 5.48943 5.50904 5.65416 5.74386 5.77302 5.82378 5.86609 5.94581 6.00804 6.02636 6.06803 6.09991 6.18445 6.21981 6.35443 6.45470 6.52443 6.61076 6.73543 6.86493 6.94495 7.04157 7.06440 7.48728 7.61243 7.65753 7.73305 7.88737 8.07548 8.31862 8.45992 9.28068 9.90158 10.61777 11.43530 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014267 B = 0.003853 C = 0.003431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1962.086319 B = 7265.443544 C = 8159.197671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.044 4.044 3 C 0.067 3.933 4 N -0.360 5.360 5 O 0.093 5.907 6 C -0.032 4.032 7 C -0.232 4.232 8 C 0.574 3.426 9 O -0.492 6.492 10 N -0.594 5.594 11 C 0.088 3.912 12 C -0.131 4.131 13 C -0.121 4.121 14 C -0.122 4.122 15 C 0.140 3.860 16 H 0.072 0.928 17 C 0.164 3.836 18 H 0.075 0.925 19 C -0.127 4.127 20 C -0.151 4.151 21 C 0.176 3.824 22 N -0.594 5.594 23 C -0.224 4.224 24 H 0.071 0.929 25 C -0.003 4.003 26 N -0.917 5.917 27 Si 0.905 3.095 28 H -0.286 1.286 29 H -0.291 1.291 30 H -0.286 1.286 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.051 0.949 34 H 0.080 0.920 35 H 0.093 0.907 36 H 0.229 0.771 37 H 0.085 0.915 38 H 0.071 0.929 39 H 0.064 0.936 40 H 0.069 0.931 41 H 0.059 0.941 42 H 0.061 0.939 43 H 0.093 0.907 44 H 0.061 0.939 45 H 0.051 0.949 46 H 0.084 0.916 47 H 0.049 0.951 48 H 0.055 0.945 49 H 0.065 0.935 50 H 0.021 0.979 51 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.655 6.125 -17.371 18.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.082 4.082 3 C -0.095 4.095 4 N -0.066 5.066 5 O 0.032 5.968 6 C -0.113 4.113 7 C -0.239 4.239 8 C 0.361 3.639 9 O -0.368 6.368 10 N -0.328 5.328 11 C -0.035 4.035 12 C -0.169 4.169 13 C -0.159 4.159 14 C -0.160 4.160 15 C 0.036 3.964 16 H 0.090 0.910 17 C 0.057 3.943 18 H 0.092 0.908 19 C -0.164 4.164 20 C -0.189 4.189 21 C 0.051 3.949 22 N -0.319 5.319 23 C -0.353 4.353 24 H 0.088 0.912 25 C -0.200 4.200 26 N -0.563 5.563 27 Si 0.735 3.265 28 H -0.212 1.212 29 H -0.217 1.217 30 H -0.213 1.213 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.070 0.930 34 H 0.098 0.902 35 H 0.111 0.889 36 H 0.245 0.755 37 H 0.102 0.898 38 H 0.089 0.911 39 H 0.082 0.918 40 H 0.088 0.912 41 H 0.078 0.922 42 H 0.079 0.921 43 H 0.111 0.889 44 H 0.080 0.920 45 H 0.069 0.931 46 H 0.102 0.898 47 H 0.068 0.932 48 H 0.074 0.926 49 H 0.083 0.917 50 H 0.039 0.961 51 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 4.114 5.550 -18.208 19.474 hybrid contribution 0.143 0.783 1.814 1.981 sum 4.257 6.333 -16.394 18.083 Atomic orbital electron populations 1.21692 0.93332 1.02553 1.02639 1.19983 0.97079 0.87232 1.03893 1.24852 0.99408 0.98903 0.86327 1.73622 1.16542 0.92767 1.23699 1.84556 1.62140 1.26843 1.23219 1.26639 1.00084 1.00847 0.83778 1.22633 1.09701 0.95252 0.96316 1.16862 0.83303 0.81075 0.82612 1.90819 1.32817 1.35516 1.77619 1.48127 1.30793 1.43434 1.10450 1.22181 0.88550 0.92373 1.00440 1.21883 0.95914 1.01357 0.97796 1.21560 0.99684 0.99879 0.94729 1.21917 0.93082 0.97244 1.03749 1.22218 0.97527 0.99276 0.77337 0.90979 1.21649 0.96276 0.91197 0.85162 0.90808 1.23110 0.99244 0.95216 0.98879 1.23013 0.99877 0.96682 0.99370 1.21351 0.97658 0.84496 0.91436 1.44694 1.78774 1.07516 1.00893 1.18901 1.30575 1.01447 0.84379 0.91166 1.24858 1.00160 0.97631 0.97362 1.69940 1.45758 1.20717 1.19929 0.86319 0.78093 0.79721 0.82349 1.21244 1.21723 1.21262 0.91580 0.91110 0.93004 0.90181 0.88889 0.75488 0.89762 0.91064 0.91758 0.91233 0.92183 0.92057 0.88873 0.92007 0.93081 0.89812 0.93201 0.92641 0.91705 0.96096 0.93813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 9.89 37.16 0.37 -1.23 16 2 C -0.04 -0.50 6.55 -27.88 -0.18 -0.68 16 3 C 0.07 0.85 6.84 -79.76 -0.55 0.31 16 4 N -0.36 -4.52 12.01 34.78 0.42 -4.10 16 5 O 0.09 0.99 11.06 18.65 0.21 1.20 16 6 C -0.03 -0.30 10.08 30.41 0.31 0.01 16 7 C -0.23 -2.88 5.93 -102.89 -0.61 -3.49 16 8 C 0.57 8.60 6.84 -12.53 -0.09 8.51 16 9 O -0.49 -8.80 10.29 5.27 0.05 -8.75 16 10 N -0.59 -8.46 2.93 -166.49 -0.49 -8.95 16 11 C 0.09 0.89 5.83 -3.71 -0.02 0.87 16 12 C -0.13 -1.36 6.08 -26.62 -0.16 -1.52 16 13 C -0.12 -1.59 5.88 -26.67 -0.16 -1.75 16 14 C -0.12 -2.09 4.97 -26.59 -0.13 -2.23 16 15 C 0.14 2.50 2.66 -67.60 -0.18 2.32 16 16 H 0.07 1.42 7.97 -51.93 -0.41 1.01 16 17 C 0.16 3.44 2.30 -66.87 -0.15 3.29 16 18 H 0.07 1.72 5.95 -51.95 -0.31 1.42 16 19 C -0.13 -2.42 4.86 -24.90 -0.12 -2.54 16 20 C -0.15 -3.05 7.09 -24.58 -0.17 -3.23 16 21 C 0.18 4.29 5.40 -2.53 -0.01 4.27 16 22 N -0.59 -14.75 2.56 -162.45 -0.42 -15.16 16 23 C -0.22 -6.07 9.80 -15.06 -0.15 -6.21 16 24 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 25 C 0.00 -0.09 5.47 -17.43 -0.10 -0.19 16 26 N -0.92 -26.39 10.59 55.49 0.59 -25.80 16 27 Si 0.90 21.81 29.55 -169.99 -5.02 16.79 16 28 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 29 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 30 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 35 H 0.09 1.13 8.13 -51.93 -0.42 0.71 16 36 H 0.23 1.17 6.43 -52.48 -0.34 0.83 16 37 H 0.08 0.66 3.47 -51.93 -0.18 0.48 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.06 0.71 8.14 -51.92 -0.42 0.29 16 40 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.09 1.98 7.84 -51.93 -0.41 1.57 16 44 H 0.06 1.08 5.75 -51.93 -0.30 0.78 16 45 H 0.05 0.94 5.50 -51.93 -0.29 0.66 16 46 H 0.08 1.56 5.50 -52.43 -0.29 1.27 16 47 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 48 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 49 H 0.06 1.78 6.96 -51.93 -0.36 1.42 16 50 H 0.02 0.55 8.05 -51.93 -0.42 0.13 16 51 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 384.02 15.07 5.79 5.79 Total: -1.00 -30.85 384.02 -8.90 -39.75 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: -7.92 Total: 2.71 kcal Atomic # 6 Polarization: -1.37 SS G_CDS: -2.11 Total: -3.48 kcal Atomic # 7 Polarization: -54.12 SS G_CDS: 0.10 Total: -54.01 kcal Atomic # 8 Polarization: -7.81 SS G_CDS: 0.26 Total: -7.55 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -30.85 -8.90 -39.75 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025268250.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.162 kcal (2) G-P(sol) polarization free energy of solvation -30.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.752 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds