Wall clock time and date at job start Wed Apr 1 2020 05:51:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50707 * 109.47012 * 2 1 4 4 N 1.30014 * 127.33824 * 270.14847 * 3 2 1 5 5 O 1.20657 * 112.30688 * 180.27318 * 4 3 2 6 6 C 1.33493 * 113.14853 * 359.73473 * 5 4 3 7 7 C 1.37356 * 106.35010 * 359.97438 * 6 5 4 8 8 C 1.47397 * 128.57002 * 179.97438 * 7 6 5 9 9 O 1.21606 * 119.99888 * 144.71012 * 8 7 6 10 10 N 1.34771 * 119.99991 * 324.71254 * 8 7 6 11 11 C 1.46929 * 120.62894 * 6.02468 * 10 8 7 12 12 C 1.53186 * 108.77470 * 233.58213 * 11 10 8 13 13 C 1.53035 * 109.31876 * 305.36903 * 12 11 10 14 14 C 1.53075 * 109.65983 * 61.29552 * 13 12 11 15 15 C 1.46923 * 120.63347 * 185.99826 * 10 8 7 16 16 H 1.08997 * 109.59396 * 246.34356 * 15 10 8 17 17 C 1.53001 * 109.58316 * 6.63278 * 15 10 8 18 18 H 1.08999 * 109.99479 * 301.65004 * 17 15 10 19 19 C 1.54320 * 109.88785 * 62.74917 * 17 15 10 20 20 C 1.55157 * 102.94330 * 141.60959 * 19 17 15 21 21 C 1.54909 * 101.58006 * 324.49803 * 20 19 17 22 22 N 1.47184 * 109.79425 * 180.53794 * 17 15 10 23 23 C 1.36931 * 125.74036 * 61.63935 * 22 17 15 24 24 H 1.07995 * 120.00197 * 14.90552 * 23 22 17 25 25 C 1.38820 * 120.00320 * 194.90984 * 23 22 17 26 26 N 1.31621 * 119.99643 * 359.97438 * 25 23 22 27 27 Si 1.86798 * 120.00089 * 179.97438 * 25 23 22 28 28 H 1.48503 * 109.47104 * 59.99812 * 27 25 23 29 29 H 1.48496 * 109.47083 * 179.97438 * 27 25 23 30 30 H 1.48501 * 109.47358 * 299.99864 * 27 25 23 31 31 H 1.08999 * 109.47094 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.47130 * 300.00036 * 1 2 3 33 33 H 1.09004 * 109.47163 * 59.99896 * 1 2 3 34 34 H 1.08999 * 109.46996 * 240.00345 * 2 1 3 35 35 H 1.08991 * 109.47144 * 119.99842 * 2 1 3 36 36 H 1.08007 * 126.82455 * 179.97438 * 6 5 4 37 37 H 1.08997 * 109.58779 * 353.37330 * 11 10 8 38 38 H 1.09007 * 109.58429 * 113.65351 * 11 10 8 39 39 H 1.09007 * 109.49829 * 65.32246 * 12 11 10 40 40 H 1.09002 * 109.49749 * 185.40863 * 12 11 10 41 41 H 1.08996 * 109.46154 * 181.38795 * 13 12 11 42 42 H 1.09000 * 109.45679 * 301.35421 * 13 12 11 43 43 H 1.08999 * 109.62413 * 178.83113 * 14 13 12 44 44 H 1.09006 * 109.38857 * 58.72457 * 14 13 12 45 45 H 1.09002 * 110.71928 * 23.24809 * 19 17 15 46 46 H 1.08994 * 110.87221 * 260.04623 * 19 17 15 47 47 H 1.09005 * 111.00179 * 206.42577 * 20 19 17 48 48 H 1.08993 * 111.00543 * 82.57289 * 20 19 17 49 49 H 1.09006 * 110.36348 * 155.84784 * 21 20 19 50 50 H 1.08999 * 110.36949 * 278.05925 * 21 20 19 51 51 H 0.96995 * 119.99348 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2926 2.1652 -1.0337 5 8 2.6868 3.2618 -0.7208 6 6 2.7518 3.4388 0.6008 7 6 2.3292 2.2622 1.1697 8 6 2.2094 1.9236 2.5992 9 8 1.3050 1.2056 2.9803 10 7 3.1022 2.4099 3.4840 11 6 4.1203 3.3819 3.0627 12 6 5.5009 2.8572 3.4690 13 6 5.5055 2.5524 4.9687 14 6 4.4676 1.4704 5.2774 15 6 3.0757 1.9785 4.8882 16 1 2.8031 2.8206 5.5242 17 6 2.0528 0.8537 5.0599 18 1 1.0663 1.1962 4.7473 19 6 2.4734 -0.3711 4.2206 20 6 2.0967 -1.5657 5.1363 21 6 2.4090 -0.9916 6.5407 22 7 2.0131 0.4267 6.4679 23 6 1.6645 1.2137 7.5328 24 1 1.1616 2.1549 7.3670 25 6 1.9576 0.8017 8.8257 26 7 2.5701 -0.3456 9.0278 27 14 1.4826 1.8756 10.2784 28 1 0.0105 2.0711 10.2892 29 1 1.9030 1.2155 11.5404 30 1 2.1561 3.1939 10.1607 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5139 0.8900 33 1 -0.3634 0.5139 -0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8899 36 1 3.0729 4.3301 1.1195 37 1 4.0807 3.5068 1.9806 38 1 3.9337 4.3400 3.5481 39 1 5.7226 1.9468 2.9120 40 1 6.2562 3.6117 3.2488 41 1 6.4942 2.2022 5.2651 42 1 5.2594 3.4575 5.5239 43 1 4.4857 1.2390 6.3424 44 1 4.7001 0.5722 4.7054 45 1 3.5461 -0.3564 4.0277 46 1 1.9152 -0.4111 3.2853 47 1 2.7199 -2.4340 4.9217 48 1 1.0394 -1.8125 5.0413 49 1 1.8246 -1.5099 7.3010 50 1 3.4737 -1.0776 6.7577 51 1 2.7745 -0.6336 9.9312 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025268250.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:51:29 Heat of formation + Delta-G solvation = 71.205381 kcal Electronic energy + Delta-G solvation = -33546.744745 eV Core-core repulsion = 29450.985662 eV Total energy + Delta-G solvation = -4095.759083 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -45.93014 -41.87697 -38.85171 -38.14729 -36.21222 -34.69898 -34.18223 -33.16950 -32.20451 -32.02668 -31.08072 -28.77657 -26.78671 -26.31995 -25.58262 -24.71345 -24.05777 -22.26622 -22.08579 -21.71524 -21.15251 -19.90268 -18.93967 -18.65680 -18.35925 -17.58683 -16.98826 -16.81341 -16.38690 -16.22562 -15.74854 -15.63555 -15.26719 -15.07918 -14.98243 -14.63435 -14.39828 -14.25853 -14.16604 -13.89055 -13.62189 -13.49918 -13.06653 -12.96261 -12.83357 -12.67104 -12.59221 -12.55476 -12.49651 -12.06383 -11.94353 -11.92832 -11.86864 -11.66119 -11.56199 -11.34824 -11.29605 -11.17593 -10.86942 -10.70100 -10.51058 -10.18235 -9.39398 -8.66399 -7.80419 -5.16136 0.19424 0.79202 1.45599 1.48036 1.54264 1.69978 2.05517 2.30730 2.53534 3.01321 3.33154 3.36483 3.61833 3.80855 3.89629 3.94890 3.96788 4.01129 4.13981 4.21547 4.22090 4.33194 4.34161 4.37007 4.39320 4.46267 4.55414 4.57582 4.67470 4.78880 4.84593 4.86455 4.89993 4.96724 5.02332 5.06920 5.10442 5.13138 5.23150 5.27532 5.29822 5.33569 5.36459 5.50983 5.54217 5.62541 5.70723 5.79793 5.86230 6.27914 6.51534 7.14669 7.21892 7.26900 7.86345 8.56324 9.30324 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014267 B = 0.003853 C = 0.003431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1962.086319 B = 7265.443544 C = 8159.197671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.045 4.045 3 C 0.057 3.943 4 N -0.374 5.374 5 O 0.101 5.899 6 C 0.006 3.994 7 C -0.261 4.261 8 C 0.576 3.424 9 O -0.531 6.531 10 N -0.593 5.593 11 C 0.081 3.919 12 C -0.124 4.124 13 C -0.117 4.117 14 C -0.111 4.111 15 C 0.154 3.846 16 H 0.050 0.950 17 C 0.163 3.837 18 H 0.051 0.949 19 C -0.109 4.109 20 C -0.141 4.141 21 C 0.185 3.815 22 N -0.610 5.610 23 C -0.231 4.231 24 H 0.069 0.931 25 C -0.056 4.056 26 N -0.945 5.945 27 Si 0.968 3.032 28 H -0.283 1.283 29 H -0.295 1.295 30 H -0.275 1.275 31 H 0.078 0.922 32 H 0.045 0.955 33 H 0.055 0.945 34 H 0.095 0.905 35 H 0.082 0.918 36 H 0.274 0.726 37 H 0.115 0.885 38 H 0.092 0.908 39 H 0.060 0.940 40 H 0.107 0.893 41 H 0.066 0.934 42 H 0.061 0.939 43 H 0.043 0.957 44 H 0.056 0.944 45 H 0.058 0.942 46 H 0.094 0.906 47 H 0.074 0.926 48 H 0.052 0.948 49 H 0.026 0.974 50 H -0.003 1.003 51 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.021 8.592 -19.974 22.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.083 4.083 3 C -0.105 4.105 4 N -0.081 5.081 5 O 0.041 5.959 6 C -0.075 4.075 7 C -0.269 4.269 8 C 0.365 3.635 9 O -0.410 6.410 10 N -0.326 5.326 11 C -0.040 4.040 12 C -0.162 4.162 13 C -0.155 4.155 14 C -0.150 4.150 15 C 0.049 3.951 16 H 0.068 0.932 17 C 0.057 3.943 18 H 0.069 0.931 19 C -0.146 4.146 20 C -0.179 4.179 21 C 0.060 3.940 22 N -0.335 5.335 23 C -0.360 4.360 24 H 0.087 0.913 25 C -0.250 4.250 26 N -0.594 5.594 27 Si 0.796 3.204 28 H -0.209 1.209 29 H -0.221 1.221 30 H -0.201 1.201 31 H 0.097 0.903 32 H 0.065 0.935 33 H 0.075 0.925 34 H 0.113 0.887 35 H 0.100 0.900 36 H 0.289 0.711 37 H 0.132 0.868 38 H 0.110 0.890 39 H 0.079 0.921 40 H 0.126 0.874 41 H 0.085 0.915 42 H 0.080 0.920 43 H 0.061 0.939 44 H 0.075 0.925 45 H 0.076 0.924 46 H 0.112 0.888 47 H 0.093 0.907 48 H 0.071 0.929 49 H 0.045 0.955 50 H 0.015 0.985 51 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 5.496 8.056 -20.873 23.039 hybrid contribution -0.312 0.066 2.560 2.579 sum 5.184 8.122 -18.313 20.694 Atomic orbital electron populations 1.21624 0.93324 1.03079 1.01560 1.19997 0.97048 0.87181 1.04050 1.25024 0.99545 0.99393 0.86556 1.73635 1.17268 0.93321 1.23841 1.84552 1.61448 1.26081 1.23812 1.27330 0.96606 1.00648 0.82893 1.22306 1.12883 0.97045 0.94634 1.17168 0.82457 0.80247 0.83660 1.90789 1.34359 1.37427 1.78435 1.48065 1.31803 1.44127 1.08598 1.22563 0.87059 0.91913 1.02448 1.21867 0.97008 1.02454 0.94838 1.21532 0.98317 0.98162 0.97451 1.21721 0.94194 0.98704 1.00354 1.21595 0.96719 0.97161 0.79620 0.93177 1.21637 0.96353 0.93141 0.83127 0.93136 1.22988 0.99693 0.93393 0.98551 1.22915 1.00229 0.97982 0.96806 1.21082 0.95390 0.84669 0.92861 1.44889 1.78773 1.07750 1.02128 1.19158 1.30021 1.01427 0.85405 0.91320 1.25580 1.00784 0.98881 0.99753 1.70144 1.47231 1.22247 1.19763 0.85322 0.77756 0.78397 0.78894 1.20912 1.22148 1.20071 0.90329 0.93534 0.92542 0.88680 0.89975 0.71066 0.86754 0.88984 0.92109 0.87426 0.91491 0.91981 0.93870 0.92544 0.92357 0.88770 0.90707 0.92899 0.95529 0.98515 0.94550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.98 9.89 71.98 0.71 -2.27 16 2 C -0.04 -0.98 6.55 29.85 0.20 -0.78 16 3 C 0.06 1.33 6.84 45.16 0.31 1.64 16 4 N -0.37 -8.38 12.01 -44.76 -0.54 -8.92 16 5 O 0.10 1.76 11.06 76.99 0.85 2.62 16 6 C 0.01 0.09 10.08 67.61 0.68 0.77 16 7 C -0.26 -5.79 5.93 -18.74 -0.11 -5.91 16 8 C 0.58 16.47 6.84 86.66 0.59 17.07 16 9 O -0.53 -19.18 10.29 -4.05 -0.04 -19.22 16 10 N -0.59 -15.84 2.93 -798.92 -2.34 -18.18 16 11 C 0.08 1.30 5.83 86.36 0.50 1.80 16 12 C -0.12 -2.05 6.08 30.67 0.19 -1.86 16 13 C -0.12 -2.87 5.88 30.63 0.18 -2.69 16 14 C -0.11 -3.89 4.97 30.68 0.15 -3.73 16 15 C 0.15 5.56 2.66 44.98 0.12 5.68 16 16 H 0.05 2.03 7.97 -2.39 -0.02 2.01 16 17 C 0.16 7.08 2.30 45.31 0.10 7.19 16 18 H 0.05 2.47 5.95 -4.88 -0.03 2.44 16 19 C -0.11 -4.20 4.86 31.78 0.15 -4.05 16 20 C -0.14 -5.84 7.09 31.99 0.23 -5.62 16 21 C 0.19 9.59 5.40 86.85 0.47 10.06 16 22 N -0.61 -31.89 2.56 -667.87 -1.71 -33.59 16 23 C -0.23 -13.03 9.80 84.04 0.82 -12.21 16 24 H 0.07 3.81 7.83 -2.91 -0.02 3.78 16 25 C -0.06 -3.22 5.47 84.86 0.46 -2.76 16 26 N -0.95 -57.18 10.59 21.65 0.23 -56.95 16 27 Si 0.97 46.12 29.55 68.60 2.03 48.15 16 28 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 29 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 30 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 31 H 0.08 1.45 8.14 -2.39 -0.02 1.44 16 32 H 0.05 1.23 8.14 -2.38 -0.02 1.21 16 33 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 34 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.08 1.96 8.13 -2.39 -0.02 1.94 16 36 H 0.27 0.98 6.43 -2.91 -0.02 0.96 16 37 H 0.11 1.12 3.47 -2.39 -0.01 1.12 16 38 H 0.09 1.18 8.14 -2.38 -0.02 1.16 16 39 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 40 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 42 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 43 H 0.04 1.93 7.84 -2.39 -0.02 1.91 16 44 H 0.06 1.99 5.75 -2.38 -0.01 1.98 16 45 H 0.06 2.15 5.50 -2.39 -0.01 2.14 16 46 H 0.09 3.53 5.50 -12.56 -0.07 3.46 16 47 H 0.07 2.71 8.14 -2.38 -0.02 2.69 16 48 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 49 H 0.03 1.55 6.96 -2.38 -0.02 1.53 16 50 H 0.00 -0.17 8.05 -2.39 -0.02 -0.19 16 51 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 Total: -1.00 -73.11 384.02 5.11 -68.00 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: 0.87 Total: 15.78 kcal Atomic # 6 Polarization: -3.45 SS G_CDS: 5.76 Total: 2.32 kcal Atomic # 7 Polarization: -113.28 SS G_CDS: -4.36 Total: -117.64 kcal Atomic # 8 Polarization: -17.41 SS G_CDS: 0.81 Total: -16.60 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 2.03 Total: 48.15 kcal Total: -73.11 5.11 -68.00 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025268250.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.209 kcal (2) G-P(sol) polarization free energy of solvation -73.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.003 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds