Wall clock time and date at job start Wed Apr 1 2020 05:51:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50705 * 109.47167 * 2 1 4 4 N 1.30013 * 127.33215 * 270.00290 * 3 2 1 5 5 O 1.20657 * 112.29984 * 180.02562 * 4 3 2 6 6 C 1.33497 * 113.15637 * 359.75090 * 5 4 3 7 7 C 1.37366 * 106.34059 * 0.39289 * 6 5 4 8 8 C 1.47399 * 128.56435 * 179.90762 * 7 6 5 9 9 O 1.21610 * 119.99495 * 147.85141 * 8 7 6 10 10 N 1.34773 * 119.99850 * 327.85489 * 8 7 6 11 11 C 1.46919 * 120.63526 * 6.75852 * 10 8 7 12 12 C 1.53192 * 108.77542 * 233.58961 * 11 10 8 13 13 C 1.53041 * 109.30916 * 305.36148 * 12 11 10 14 14 C 1.53077 * 109.66110 * 61.30265 * 13 12 11 15 15 C 1.46927 * 120.62598 * 186.73436 * 10 8 7 16 16 H 1.09000 * 109.58783 * 246.34599 * 15 10 8 17 17 C 1.53005 * 109.58554 * 6.62742 * 15 10 8 18 18 H 1.08995 * 109.87523 * 314.61338 * 17 15 10 19 19 C 1.54327 * 109.88019 * 193.44013 * 17 15 10 20 20 C 1.55266 * 103.00941 * 218.46832 * 19 17 15 21 21 C 1.54906 * 101.52984 * 35.36385 * 20 19 17 22 22 N 1.47017 * 109.88314 * 75.63873 * 17 15 10 23 23 C 1.36942 * 125.64564 * 298.33098 * 22 17 15 24 24 H 1.07998 * 120.00120 * 328.98503 * 23 22 17 25 25 C 1.38814 * 119.99935 * 148.97827 * 23 22 17 26 26 N 1.31617 * 120.00176 * 0.02562 * 25 23 22 27 27 Si 1.86796 * 119.99834 * 180.02562 * 25 23 22 28 28 H 1.48503 * 109.47467 * 0.02562 * 27 25 23 29 29 H 1.48497 * 109.47188 * 120.00202 * 27 25 23 30 30 H 1.48503 * 109.47380 * 240.00284 * 27 25 23 31 31 H 1.09002 * 109.47334 * 59.99788 * 1 2 3 32 32 H 1.08992 * 109.47332 * 179.97438 * 1 2 3 33 33 H 1.09007 * 109.46813 * 300.00270 * 1 2 3 34 34 H 1.09004 * 109.46995 * 240.00484 * 2 1 3 35 35 H 1.09002 * 109.47334 * 120.00212 * 2 1 3 36 36 H 1.07994 * 126.83398 * 180.30223 * 6 5 4 37 37 H 1.09000 * 109.58757 * 353.37526 * 11 10 8 38 38 H 1.08998 * 109.59157 * 113.65475 * 11 10 8 39 39 H 1.08993 * 109.50187 * 65.31362 * 12 11 10 40 40 H 1.08999 * 109.49954 * 185.41451 * 12 11 10 41 41 H 1.09005 * 109.45843 * 181.38811 * 13 12 11 42 42 H 1.09000 * 109.46494 * 301.35729 * 13 12 11 43 43 H 1.08997 * 109.62565 * 178.82400 * 14 13 12 44 44 H 1.08995 * 109.38512 * 58.71880 * 14 13 12 45 45 H 1.08999 * 110.72061 * 336.75445 * 19 17 15 46 46 H 1.09006 * 110.71823 * 99.84859 * 19 17 15 47 47 H 1.09001 * 110.96229 * 277.33912 * 20 19 17 48 48 H 1.08998 * 111.10584 * 153.44957 * 20 19 17 49 49 H 1.09006 * 110.37243 * 204.23826 * 21 20 19 50 50 H 1.08998 * 110.36720 * 82.01668 * 21 20 19 51 51 H 0.96993 * 120.00159 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 7 2.2951 2.1642 -1.0338 5 8 2.6841 3.2627 -0.7208 6 6 2.7424 3.4422 0.6007 7 6 2.3303 2.2617 1.1696 8 6 2.2102 1.9233 2.5992 9 8 1.3472 1.1513 2.9708 10 7 3.0568 2.4696 3.4944 11 6 4.0066 3.5135 3.0862 12 6 5.4172 3.0879 3.5055 13 6 5.4282 2.7794 5.0044 14 6 4.4676 1.6247 5.2997 15 6 3.0469 2.0328 4.8972 16 1 2.7080 2.8511 5.5324 17 6 2.1056 0.8370 5.0554 18 1 1.1711 1.0288 4.5283 19 6 1.8255 0.5840 6.5518 20 6 1.8063 -0.9657 6.6467 21 6 2.8930 -1.3527 5.6128 22 7 2.7424 -0.3750 4.5197 23 6 3.1308 -0.5645 3.2202 24 1 2.5859 -0.0882 2.4187 25 6 4.2252 -1.3689 2.9333 26 7 4.8891 -1.9498 3.9100 27 14 4.7555 -1.6269 1.1608 28 1 3.8514 -0.8696 0.2584 29 1 6.1483 -1.1428 0.9854 30 1 4.6886 -3.0730 0.8296 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3633 0.5139 0.8900 34 1 1.8933 -0.5138 -0.8901 35 1 1.8934 -0.5139 0.8900 36 1 3.0532 4.3369 1.1195 37 1 3.9692 3.6387 2.0041 38 1 3.7469 4.4541 3.5720 39 1 5.7092 2.1976 2.9487 40 1 6.1185 3.8954 3.2952 41 1 6.4365 2.5000 5.3103 42 1 5.1121 3.6627 5.5594 43 1 4.4915 1.3917 6.3642 44 1 4.7699 0.7474 4.7279 45 1 2.6238 0.9965 7.1687 46 1 0.8615 1.0034 6.8400 47 1 0.8330 -1.3620 6.3574 48 1 2.0814 -1.3011 7.6466 49 1 2.7223 -2.3639 5.2434 50 1 3.8849 -1.2744 6.0577 51 1 5.6540 -2.5115 3.7095 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025268251.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:51:33 Heat of formation + Delta-G solvation = 105.129790 kcal Electronic energy + Delta-G solvation = -35003.333842 eV Core-core repulsion = 30909.045832 eV Total energy + Delta-G solvation = -4094.288010 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -44.65245 -40.27374 -37.12456 -36.61451 -34.87671 -32.98735 -32.45639 -31.73981 -30.91459 -30.53260 -29.03836 -27.31378 -25.34416 -24.53628 -24.05463 -23.33917 -22.53774 -20.81510 -20.50939 -20.08488 -19.34373 -18.76149 -17.47488 -17.11647 -16.85860 -16.21310 -15.76457 -15.00335 -14.59558 -14.57221 -14.23037 -13.97904 -13.82347 -13.63189 -13.40675 -13.10548 -12.94053 -12.84272 -12.56871 -12.38783 -11.93785 -11.86410 -11.75037 -11.33201 -11.30384 -11.14864 -10.94618 -10.83874 -10.76927 -10.63154 -10.43944 -10.39013 -10.07063 -9.97904 -9.90070 -9.80014 -9.65784 -9.61047 -9.42840 -9.05517 -8.37470 -8.08501 -7.84038 -6.28407 -5.64255 -3.03303 1.39531 2.16051 3.05020 3.37482 3.44677 3.46678 3.48642 3.78667 4.33188 4.56237 4.57975 4.90587 5.08394 5.14044 5.24372 5.34491 5.47874 5.49573 5.55774 5.63153 5.66825 5.69079 5.71018 5.73553 5.77676 5.82993 5.88459 6.02953 6.08980 6.15935 6.16892 6.26003 6.27879 6.38171 6.46758 6.48460 6.54102 6.59848 6.64643 6.66955 6.75885 6.78981 6.86162 7.11761 7.52100 7.57061 7.65946 7.80630 8.00681 8.06487 8.46760 8.54144 8.91003 9.36896 9.98288 10.78899 11.47655 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009917 B = 0.006529 C = 0.005674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2822.776526 B = 4287.734215 C = 4933.723940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.058 4.058 3 C 0.081 3.919 4 N -0.367 5.367 5 O 0.089 5.911 6 C -0.047 4.047 7 C -0.227 4.227 8 C 0.605 3.395 9 O -0.485 6.485 10 N -0.586 5.586 11 C 0.088 3.912 12 C -0.132 4.132 13 C -0.115 4.115 14 C -0.131 4.131 15 C 0.149 3.851 16 H 0.049 0.951 17 C 0.118 3.882 18 H 0.115 0.885 19 C -0.130 4.130 20 C -0.144 4.144 21 C 0.171 3.829 22 N -0.572 5.572 23 C -0.220 4.220 24 H 0.095 0.905 25 C 0.000 4.000 26 N -0.909 5.909 27 Si 0.869 3.131 28 H -0.264 1.264 29 H -0.296 1.296 30 H -0.293 1.293 31 H 0.045 0.955 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.074 0.926 35 H 0.116 0.884 36 H 0.229 0.771 37 H 0.086 0.914 38 H 0.064 0.936 39 H 0.072 0.928 40 H 0.063 0.937 41 H 0.055 0.945 42 H 0.048 0.952 43 H 0.056 0.944 44 H 0.117 0.883 45 H 0.054 0.946 46 H 0.052 0.948 47 H 0.055 0.945 48 H 0.051 0.949 49 H 0.039 0.961 50 H 0.034 0.966 51 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.089 12.389 -0.233 12.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.095 4.095 3 C -0.081 4.081 4 N -0.074 5.074 5 O 0.029 5.971 6 C -0.129 4.129 7 C -0.234 4.234 8 C 0.393 3.607 9 O -0.362 6.362 10 N -0.318 5.318 11 C -0.036 4.036 12 C -0.170 4.170 13 C -0.153 4.153 14 C -0.169 4.169 15 C 0.045 3.955 16 H 0.067 0.933 17 C 0.012 3.988 18 H 0.131 0.869 19 C -0.168 4.168 20 C -0.182 4.182 21 C 0.046 3.954 22 N -0.296 5.296 23 C -0.350 4.350 24 H 0.112 0.888 25 C -0.197 4.197 26 N -0.556 5.556 27 Si 0.700 3.300 28 H -0.189 1.189 29 H -0.223 1.223 30 H -0.220 1.220 31 H 0.065 0.935 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.092 0.908 35 H 0.134 0.866 36 H 0.245 0.755 37 H 0.104 0.896 38 H 0.083 0.917 39 H 0.091 0.909 40 H 0.081 0.919 41 H 0.074 0.926 42 H 0.067 0.933 43 H 0.074 0.926 44 H 0.135 0.865 45 H 0.072 0.928 46 H 0.071 0.929 47 H 0.073 0.927 48 H 0.070 0.930 49 H 0.057 0.943 50 H 0.052 0.948 51 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -3.452 11.679 -1.459 12.266 hybrid contribution 1.056 -0.214 0.032 1.078 sum -2.396 11.465 -1.427 11.799 Atomic orbital electron populations 1.21652 0.93859 1.02209 1.01906 1.20367 0.96414 0.87546 1.05210 1.24822 0.98388 0.98670 0.86192 1.73590 1.17145 0.92874 1.23826 1.84522 1.62581 1.26811 1.23221 1.26699 1.01179 1.01000 0.83983 1.22816 1.09020 0.94705 0.96883 1.16579 0.82145 0.79624 0.82308 1.90647 1.35601 1.33409 1.76505 1.47585 1.35586 1.38768 1.09873 1.22193 0.89987 0.90664 1.00716 1.21848 0.95616 1.01762 0.97769 1.21505 0.99984 0.98747 0.95073 1.21999 0.93427 1.00006 1.01420 1.21997 0.97849 0.97096 0.78584 0.93300 1.22614 0.98223 0.86628 0.91371 0.86864 1.22675 0.99556 0.96792 0.97820 1.22925 1.00678 0.95355 0.99273 1.21309 0.93730 0.93274 0.87134 1.44101 1.70478 1.09626 1.05356 1.19759 1.05346 1.26597 0.83266 0.88778 1.25234 0.96944 1.01676 0.95894 1.69926 1.21353 1.35027 1.29251 0.86749 0.78723 0.77869 0.86702 1.18890 1.22330 1.22033 0.93548 0.91814 0.91389 0.90787 0.86639 0.75484 0.89643 0.91743 0.90920 0.91860 0.92599 0.93321 0.92570 0.86495 0.92753 0.92896 0.92669 0.93048 0.94303 0.94849 0.94281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 9.89 37.16 0.37 -1.81 16 2 C -0.06 -1.06 5.01 -27.88 -0.14 -1.20 16 3 C 0.08 1.49 6.84 -79.77 -0.55 0.94 16 4 N -0.37 -6.36 12.01 34.78 0.42 -5.94 16 5 O 0.09 1.30 11.06 18.64 0.21 1.51 16 6 C -0.05 -0.62 10.16 30.41 0.31 -0.31 16 7 C -0.23 -3.87 5.95 -102.89 -0.61 -4.49 16 8 C 0.61 11.35 5.04 -12.53 -0.06 11.29 16 9 O -0.49 -10.36 10.25 5.27 0.05 -10.31 16 10 N -0.59 -9.90 2.83 -166.49 -0.47 -10.37 16 11 C 0.09 1.13 5.86 -3.71 -0.02 1.11 16 12 C -0.13 -1.85 6.09 -26.61 -0.16 -2.01 16 13 C -0.12 -1.72 5.88 -26.67 -0.16 -1.88 16 14 C -0.13 -2.41 4.95 -26.59 -0.13 -2.54 16 15 C 0.15 2.65 2.51 -67.60 -0.17 2.48 16 16 H 0.05 0.79 8.09 -51.93 -0.42 0.37 16 17 C 0.12 2.38 2.34 -66.95 -0.16 2.22 16 18 H 0.12 2.50 4.80 -57.16 -0.27 2.22 16 19 C -0.13 -2.30 6.32 -24.83 -0.16 -2.45 16 20 C -0.14 -2.73 7.10 -24.52 -0.17 -2.90 16 21 C 0.17 4.00 5.42 -2.53 -0.01 3.99 16 22 N -0.57 -13.49 1.88 -162.57 -0.31 -13.79 16 23 C -0.22 -5.60 7.15 -15.06 -0.11 -5.71 16 24 H 0.10 2.34 1.65 -52.49 -0.09 2.25 16 25 C 0.00 0.00 5.29 -17.43 -0.09 -0.10 16 26 N -0.91 -25.67 11.39 55.49 0.63 -25.04 16 27 Si 0.87 21.36 28.92 -169.99 -4.92 16.45 16 28 H -0.26 -6.10 5.04 56.52 0.28 -5.82 16 29 H -0.30 -7.53 7.11 56.52 0.40 -7.13 16 30 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 31 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.07 1.31 8.07 -51.93 -0.42 0.89 16 35 H 0.12 2.47 4.47 -51.93 -0.23 2.24 16 36 H 0.23 1.85 6.13 -52.49 -0.32 1.53 16 37 H 0.09 0.98 3.17 -51.93 -0.16 0.82 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 40 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 41 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.06 1.03 7.10 -51.93 -0.37 0.66 16 44 H 0.12 2.77 6.26 -51.93 -0.33 2.44 16 45 H 0.05 0.91 6.76 -51.93 -0.35 0.56 16 46 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 47 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 48 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 49 H 0.04 1.02 8.00 -51.93 -0.42 0.60 16 50 H 0.03 0.86 7.69 -51.93 -0.40 0.46 16 51 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 369.45 15.07 5.57 5.57 Total: -1.00 -30.19 369.45 -8.52 -38.71 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: -7.68 Total: 6.58 kcal Atomic # 6 Polarization: -1.34 SS G_CDS: -2.03 Total: -3.37 kcal Atomic # 7 Polarization: -55.41 SS G_CDS: 0.27 Total: -55.14 kcal Atomic # 8 Polarization: -9.06 SS G_CDS: 0.26 Total: -8.80 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.92 Total: 16.45 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -30.19 -8.52 -38.71 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025268251.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.839 kcal (2) G-P(sol) polarization free energy of solvation -30.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.710 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds