Wall clock time and date at job start Wed Apr 1 2020 05:51:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50705 * 109.47167 * 2 1 4 4 N 1.30013 * 127.33215 * 270.00290 * 3 2 1 5 5 O 1.20657 * 112.29984 * 180.02562 * 4 3 2 6 6 C 1.33497 * 113.15637 * 359.75090 * 5 4 3 7 7 C 1.37366 * 106.34059 * 0.39289 * 6 5 4 8 8 C 1.47399 * 128.56435 * 179.90762 * 7 6 5 9 9 O 1.21610 * 119.99495 * 147.85141 * 8 7 6 10 10 N 1.34773 * 119.99850 * 327.85489 * 8 7 6 11 11 C 1.46919 * 120.63526 * 6.75852 * 10 8 7 12 12 C 1.53192 * 108.77542 * 233.58961 * 11 10 8 13 13 C 1.53041 * 109.30916 * 305.36148 * 12 11 10 14 14 C 1.53077 * 109.66110 * 61.30265 * 13 12 11 15 15 C 1.46927 * 120.62598 * 186.73436 * 10 8 7 16 16 H 1.09000 * 109.58783 * 246.34599 * 15 10 8 17 17 C 1.53005 * 109.58554 * 6.62742 * 15 10 8 18 18 H 1.08995 * 109.87523 * 314.61338 * 17 15 10 19 19 C 1.54327 * 109.88019 * 193.44013 * 17 15 10 20 20 C 1.55266 * 103.00941 * 218.46832 * 19 17 15 21 21 C 1.54906 * 101.52984 * 35.36385 * 20 19 17 22 22 N 1.47017 * 109.88314 * 75.63873 * 17 15 10 23 23 C 1.36942 * 125.64564 * 298.33098 * 22 17 15 24 24 H 1.07998 * 120.00120 * 328.98503 * 23 22 17 25 25 C 1.38814 * 119.99935 * 148.97827 * 23 22 17 26 26 N 1.31617 * 120.00176 * 0.02562 * 25 23 22 27 27 Si 1.86796 * 119.99834 * 180.02562 * 25 23 22 28 28 H 1.48503 * 109.47467 * 0.02562 * 27 25 23 29 29 H 1.48497 * 109.47188 * 120.00202 * 27 25 23 30 30 H 1.48503 * 109.47380 * 240.00284 * 27 25 23 31 31 H 1.09002 * 109.47334 * 59.99788 * 1 2 3 32 32 H 1.08992 * 109.47332 * 179.97438 * 1 2 3 33 33 H 1.09007 * 109.46813 * 300.00270 * 1 2 3 34 34 H 1.09004 * 109.46995 * 240.00484 * 2 1 3 35 35 H 1.09002 * 109.47334 * 120.00212 * 2 1 3 36 36 H 1.07994 * 126.83398 * 180.30223 * 6 5 4 37 37 H 1.09000 * 109.58757 * 353.37526 * 11 10 8 38 38 H 1.08998 * 109.59157 * 113.65475 * 11 10 8 39 39 H 1.08993 * 109.50187 * 65.31362 * 12 11 10 40 40 H 1.08999 * 109.49954 * 185.41451 * 12 11 10 41 41 H 1.09005 * 109.45843 * 181.38811 * 13 12 11 42 42 H 1.09000 * 109.46494 * 301.35729 * 13 12 11 43 43 H 1.08997 * 109.62565 * 178.82400 * 14 13 12 44 44 H 1.08995 * 109.38512 * 58.71880 * 14 13 12 45 45 H 1.08999 * 110.72061 * 336.75445 * 19 17 15 46 46 H 1.09006 * 110.71823 * 99.84859 * 19 17 15 47 47 H 1.09001 * 110.96229 * 277.33912 * 20 19 17 48 48 H 1.08998 * 111.10584 * 153.44957 * 20 19 17 49 49 H 1.09006 * 110.37243 * 204.23826 * 21 20 19 50 50 H 1.08998 * 110.36720 * 82.01668 * 21 20 19 51 51 H 0.96993 * 120.00159 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 7 2.2951 2.1642 -1.0338 5 8 2.6841 3.2627 -0.7208 6 6 2.7424 3.4422 0.6007 7 6 2.3303 2.2617 1.1696 8 6 2.2102 1.9233 2.5992 9 8 1.3472 1.1513 2.9708 10 7 3.0568 2.4696 3.4944 11 6 4.0066 3.5135 3.0862 12 6 5.4172 3.0879 3.5055 13 6 5.4282 2.7794 5.0044 14 6 4.4676 1.6247 5.2997 15 6 3.0469 2.0328 4.8972 16 1 2.7080 2.8511 5.5324 17 6 2.1056 0.8370 5.0554 18 1 1.1711 1.0288 4.5283 19 6 1.8255 0.5840 6.5518 20 6 1.8063 -0.9657 6.6467 21 6 2.8930 -1.3527 5.6128 22 7 2.7424 -0.3750 4.5197 23 6 3.1308 -0.5645 3.2202 24 1 2.5859 -0.0882 2.4187 25 6 4.2252 -1.3689 2.9333 26 7 4.8891 -1.9498 3.9100 27 14 4.7555 -1.6269 1.1608 28 1 3.8514 -0.8696 0.2584 29 1 6.1483 -1.1428 0.9854 30 1 4.6886 -3.0730 0.8296 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3633 0.5139 0.8900 34 1 1.8933 -0.5138 -0.8901 35 1 1.8934 -0.5139 0.8900 36 1 3.0532 4.3369 1.1195 37 1 3.9692 3.6387 2.0041 38 1 3.7469 4.4541 3.5720 39 1 5.7092 2.1976 2.9487 40 1 6.1185 3.8954 3.2952 41 1 6.4365 2.5000 5.3103 42 1 5.1121 3.6627 5.5594 43 1 4.4915 1.3917 6.3642 44 1 4.7699 0.7474 4.7279 45 1 2.6238 0.9965 7.1687 46 1 0.8615 1.0034 6.8400 47 1 0.8330 -1.3620 6.3574 48 1 2.0814 -1.3011 7.6466 49 1 2.7223 -2.3639 5.2434 50 1 3.8849 -1.2744 6.0577 51 1 5.6540 -2.5115 3.7095 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025268251.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:51:32 Heat of formation + Delta-G solvation = 87.222322 kcal Electronic energy + Delta-G solvation = -35004.110369 eV Core-core repulsion = 30909.045832 eV Total energy + Delta-G solvation = -4095.064536 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -45.92112 -41.68494 -38.66170 -38.01346 -36.21408 -34.40375 -34.26682 -33.04939 -32.22682 -31.86799 -30.89695 -28.79179 -26.82364 -26.17260 -25.49239 -24.63542 -23.89889 -22.14258 -21.87737 -21.72286 -20.80496 -20.15548 -18.87320 -18.59581 -18.29225 -17.73407 -17.20893 -16.47857 -16.32600 -15.92718 -15.68113 -15.51963 -15.26866 -15.06768 -14.70922 -14.44852 -14.38989 -14.19732 -13.91184 -13.84391 -13.64384 -13.44025 -13.32779 -13.00464 -12.72869 -12.63675 -12.57791 -12.37008 -12.24571 -12.06539 -11.88600 -11.77226 -11.69650 -11.55255 -11.48066 -11.35096 -11.21989 -11.09305 -10.81659 -10.51261 -10.36938 -9.60065 -9.22996 -8.21867 -7.69639 -5.07099 0.26027 0.82050 1.31949 1.39390 1.43382 1.80960 2.28533 2.51671 2.54513 3.03408 3.36170 3.49948 3.71455 3.88831 3.96754 3.97318 4.10902 4.13813 4.21554 4.27700 4.32885 4.33290 4.39006 4.43890 4.46544 4.58124 4.60201 4.64116 4.73943 4.82183 4.85709 4.94434 4.97542 4.97997 5.07110 5.14601 5.17718 5.21020 5.25292 5.25629 5.31034 5.36707 5.45097 5.57510 5.71959 5.86222 5.97550 6.04430 6.15497 6.56686 6.71331 7.26825 7.33150 7.53667 8.04438 8.80422 9.41763 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009917 B = 0.006529 C = 0.005674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2822.776526 B = 4287.734215 C = 4933.723940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.058 4.058 3 C 0.055 3.945 4 N -0.380 5.380 5 O 0.103 5.897 6 C -0.003 4.003 7 C -0.265 4.265 8 C 0.600 3.400 9 O -0.524 6.524 10 N -0.588 5.588 11 C 0.083 3.917 12 C -0.130 4.130 13 C -0.111 4.111 14 C -0.125 4.125 15 C 0.153 3.847 16 H 0.084 0.916 17 C 0.110 3.890 18 H 0.104 0.896 19 C -0.120 4.120 20 C -0.132 4.132 21 C 0.177 3.823 22 N -0.583 5.583 23 C -0.195 4.195 24 H 0.107 0.893 25 C -0.054 4.054 26 N -0.941 5.941 27 Si 0.907 3.093 28 H -0.244 1.244 29 H -0.310 1.310 30 H -0.309 1.309 31 H 0.061 0.939 32 H 0.072 0.928 33 H 0.054 0.946 34 H 0.073 0.927 35 H 0.080 0.920 36 H 0.284 0.716 37 H 0.100 0.900 38 H 0.113 0.887 39 H 0.025 0.975 40 H 0.102 0.898 41 H 0.048 0.952 42 H 0.084 0.916 43 H 0.050 0.950 44 H 0.058 0.942 45 H 0.067 0.933 46 H 0.081 0.919 47 H 0.055 0.945 48 H 0.074 0.926 49 H -0.005 1.005 50 H 0.005 0.995 51 H 0.233 0.767 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.902 17.200 0.040 17.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.097 4.097 3 C -0.107 4.107 4 N -0.086 5.086 5 O 0.042 5.958 6 C -0.084 4.084 7 C -0.272 4.272 8 C 0.388 3.612 9 O -0.404 6.404 10 N -0.320 5.320 11 C -0.039 4.039 12 C -0.168 4.168 13 C -0.148 4.148 14 C -0.163 4.163 15 C 0.049 3.951 16 H 0.102 0.898 17 C 0.004 3.996 18 H 0.120 0.880 19 C -0.158 4.158 20 C -0.170 4.170 21 C 0.051 3.949 22 N -0.306 5.306 23 C -0.326 4.326 24 H 0.124 0.876 25 C -0.247 4.247 26 N -0.591 5.591 27 Si 0.739 3.261 28 H -0.167 1.167 29 H -0.238 1.238 30 H -0.237 1.237 31 H 0.080 0.920 32 H 0.091 0.909 33 H 0.074 0.926 34 H 0.092 0.908 35 H 0.098 0.902 36 H 0.299 0.701 37 H 0.118 0.882 38 H 0.130 0.870 39 H 0.044 0.956 40 H 0.121 0.879 41 H 0.067 0.933 42 H 0.103 0.897 43 H 0.069 0.931 44 H 0.077 0.923 45 H 0.085 0.915 46 H 0.100 0.900 47 H 0.074 0.926 48 H 0.092 0.908 49 H 0.013 0.987 50 H 0.023 0.977 51 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -4.283 16.532 -1.208 17.121 hybrid contribution 1.278 -1.628 -0.038 2.070 sum -3.005 14.904 -1.246 15.255 Atomic orbital electron populations 1.21561 0.92137 1.02878 1.01952 1.20232 0.98025 0.88111 1.03285 1.24861 0.99633 0.98881 0.87291 1.73582 1.17592 0.93572 1.23816 1.84503 1.61534 1.25653 1.24134 1.27542 0.97159 1.00900 0.82751 1.22704 1.12181 0.96461 0.95882 1.16865 0.81931 0.79204 0.83150 1.90618 1.37264 1.35192 1.77280 1.47711 1.35735 1.39240 1.09288 1.22561 0.88096 0.91036 1.02169 1.21843 0.97460 1.01149 0.96331 1.21472 0.98630 0.98385 0.96319 1.21819 0.95022 0.99449 1.00051 1.21823 0.96415 0.96966 0.79917 0.89792 1.22653 0.98050 0.86199 0.92667 0.87982 1.22662 1.01549 0.95345 0.96255 1.22794 0.98677 0.96830 0.98723 1.21080 0.94072 0.91399 0.88335 1.44284 1.69969 1.11523 1.04846 1.20171 1.03784 1.23889 0.84730 0.87599 1.25683 0.98073 1.03301 0.97685 1.70090 1.21993 1.36882 1.30183 0.86091 0.77913 0.76863 0.85196 1.16729 1.23821 1.23738 0.91965 0.90892 0.92647 0.90847 0.90159 0.70112 0.88201 0.86953 0.95561 0.87927 0.93296 0.89747 0.93096 0.92273 0.91478 0.89993 0.92607 0.90771 0.98650 0.97748 0.95773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.02 9.89 71.98 0.71 -3.30 16 2 C -0.06 -2.19 5.01 29.85 0.15 -2.04 16 3 C 0.05 1.95 6.84 45.16 0.31 2.26 16 4 N -0.38 -12.41 12.01 -44.78 -0.54 -12.94 16 5 O 0.10 2.65 11.06 76.95 0.85 3.50 16 6 C 0.00 -0.06 10.16 67.61 0.69 0.63 16 7 C -0.26 -8.48 5.95 -18.74 -0.11 -8.59 16 8 C 0.60 21.60 5.04 86.66 0.44 22.04 16 9 O -0.52 -22.37 10.25 -4.06 -0.04 -22.41 16 10 N -0.59 -18.23 2.83 -798.91 -2.26 -20.49 16 11 C 0.08 1.72 5.86 86.36 0.51 2.23 16 12 C -0.13 -3.20 6.09 30.67 0.19 -3.01 16 13 C -0.11 -2.97 5.88 30.63 0.18 -2.79 16 14 C -0.12 -4.50 4.95 30.68 0.15 -4.35 16 15 C 0.15 5.06 2.51 44.98 0.11 5.17 16 16 H 0.08 2.27 8.09 -2.39 -0.02 2.25 16 17 C 0.11 4.32 2.34 45.34 0.11 4.42 16 18 H 0.10 4.43 4.80 -85.19 -0.41 4.02 16 19 C -0.12 -3.97 6.32 31.82 0.20 -3.77 16 20 C -0.13 -4.95 7.10 32.02 0.23 -4.72 16 21 C 0.18 8.73 5.42 86.85 0.47 9.20 16 22 N -0.58 -28.44 1.88 -668.26 -1.26 -29.70 16 23 C -0.20 -10.38 7.15 84.03 0.60 -9.78 16 24 H 0.11 5.44 1.65 -2.91 0.00 5.44 16 25 C -0.05 -3.09 5.29 84.86 0.45 -2.64 16 26 N -0.94 -57.21 11.39 21.65 0.25 -56.97 16 27 Si 0.91 46.52 28.92 68.60 1.98 48.51 16 28 H -0.24 -11.50 5.04 99.48 0.50 -11.00 16 29 H -0.31 -16.37 7.11 99.48 0.71 -15.66 16 30 H -0.31 -16.44 7.11 99.48 0.71 -15.73 16 31 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 33 H 0.05 1.87 8.14 -2.38 -0.02 1.85 16 34 H 0.07 2.65 8.07 -2.38 -0.02 2.63 16 35 H 0.08 3.56 4.47 -2.39 -0.01 3.55 16 36 H 0.28 2.54 6.13 -2.91 -0.02 2.52 16 37 H 0.10 1.72 3.17 -2.39 -0.01 1.72 16 38 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.03 0.88 8.14 -2.39 -0.02 0.87 16 40 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 41 H 0.05 1.37 8.14 -2.38 -0.02 1.35 16 42 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 43 H 0.05 1.83 7.10 -2.39 -0.02 1.81 16 44 H 0.06 2.89 6.26 -2.39 -0.01 2.87 16 45 H 0.07 2.06 6.76 -2.39 -0.02 2.05 16 46 H 0.08 2.29 8.14 -2.38 -0.02 2.27 16 47 H 0.06 2.08 8.14 -2.39 -0.02 2.07 16 48 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 49 H -0.01 -0.29 8.00 -2.38 -0.02 -0.31 16 50 H 0.00 0.25 7.69 -2.39 -0.02 0.23 16 51 H 0.23 14.22 8.31 -92.71 -0.77 13.45 16 Total: -1.00 -74.93 369.45 4.71 -70.22 By element: Atomic # 1 Polarization: 18.97 SS G_CDS: 0.36 Total: 19.32 kcal Atomic # 6 Polarization: -4.42 SS G_CDS: 5.37 Total: 0.95 kcal Atomic # 7 Polarization: -116.29 SS G_CDS: -3.81 Total: -120.10 kcal Atomic # 8 Polarization: -19.72 SS G_CDS: 0.81 Total: -18.91 kcal Atomic # 14 Polarization: 46.52 SS G_CDS: 1.98 Total: 48.51 kcal Total: -74.93 4.71 -70.22 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025268251.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.445 kcal (2) G-P(sol) polarization free energy of solvation -74.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.222 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds