Wall clock time and date at job start Wed Apr 1 2020 06:03:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50703 * 109.46851 * 2 1 4 4 N 1.33694 * 126.27576 * 274.84361 * 3 2 1 5 5 C 1.30619 * 108.99405 * 180.02562 * 4 3 2 6 6 O 1.33663 * 109.15509 * 359.74635 * 5 4 3 7 7 C 1.35336 * 107.68383 * 0.40284 * 6 5 4 8 8 C 1.46727 * 126.64170 * 179.87445 * 7 6 5 9 9 O 1.21685 * 119.99717 * 173.84186 * 8 7 6 10 10 N 1.34771 * 120.00090 * 353.83626 * 8 7 6 11 11 C 1.46930 * 120.62916 * 6.24401 * 10 8 7 12 12 C 1.53187 * 108.77295 * 233.62445 * 11 10 8 13 13 C 1.53038 * 109.31556 * 305.36648 * 12 11 10 14 14 C 1.53072 * 109.66178 * 61.29895 * 13 12 11 15 15 C 1.46930 * 120.63269 * 186.25670 * 10 8 7 16 16 H 1.08996 * 109.59063 * 246.30650 * 15 10 8 17 17 C 1.52999 * 109.58369 * 6.59090 * 15 10 8 18 18 H 1.09003 * 109.87321 * 304.08395 * 17 15 10 19 19 C 1.54323 * 110.01520 * 65.18142 * 17 15 10 20 20 C 1.55157 * 102.94135 * 141.67906 * 19 17 15 21 21 C 1.54903 * 101.58456 * 324.50051 * 20 19 17 22 22 N 1.47025 * 109.88122 * 183.06662 * 17 15 10 23 23 C 1.36942 * 125.64445 * 61.52024 * 22 17 15 24 24 H 1.07998 * 120.00037 * 355.94363 * 23 22 17 25 25 C 1.38814 * 119.99747 * 175.93662 * 23 22 17 26 26 N 1.31619 * 119.99771 * 0.02562 * 25 23 22 27 27 Si 1.86794 * 120.00067 * 180.02562 * 25 23 22 28 28 H 1.48508 * 109.47059 * 0.02562 * 27 25 23 29 29 H 1.48499 * 109.47403 * 119.99929 * 27 25 23 30 30 H 1.48498 * 109.47353 * 240.00044 * 27 25 23 31 31 H 1.09002 * 109.46768 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47465 * 300.00380 * 1 2 3 33 33 H 1.09008 * 109.47059 * 60.00335 * 1 2 3 34 34 H 1.08991 * 109.47357 * 240.00356 * 2 1 3 35 35 H 1.08998 * 109.47119 * 119.99671 * 2 1 3 36 36 H 1.08002 * 125.41979 * 180.02562 * 5 4 3 37 37 H 1.08997 * 109.58542 * 353.41333 * 11 10 8 38 38 H 1.09002 * 109.58932 * 113.69873 * 11 10 8 39 39 H 1.09002 * 109.49918 * 65.31512 * 12 11 10 40 40 H 1.09002 * 109.49927 * 185.37723 * 12 11 10 41 41 H 1.09001 * 109.46330 * 181.39069 * 13 12 11 42 42 H 1.09005 * 109.46066 * 301.35511 * 13 12 11 43 43 H 1.08993 * 109.62499 * 178.83193 * 14 13 12 44 44 H 1.09000 * 109.39171 * 58.72310 * 14 13 12 45 45 H 1.09008 * 110.71483 * 23.31888 * 19 17 15 46 46 H 1.08999 * 110.72090 * 260.05062 * 19 17 15 47 47 H 1.08998 * 111.00413 * 206.42489 * 20 19 17 48 48 H 1.09007 * 111.00086 * 82.57845 * 20 19 17 49 49 H 1.08997 * 110.36751 * 155.84777 * 21 20 19 50 50 H 1.08995 * 110.36788 * 278.05982 * 21 20 19 51 51 H 0.97002 * 119.99817 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2101 2.1970 -1.0740 5 6 2.6572 3.3618 -0.6874 6 8 2.7732 3.3671 0.6442 7 6 2.3891 2.1503 1.0952 8 6 2.3568 1.7046 2.4928 9 8 1.8835 0.6195 2.7745 10 7 2.8513 2.4969 3.4644 11 6 3.3006 3.8624 3.1606 12 6 4.7367 4.0328 3.6658 13 6 4.7978 3.6667 5.1504 14 6 4.3906 2.2030 5.3372 15 6 2.9517 2.0114 4.8475 16 1 2.2709 2.5770 5.4837 17 6 2.5862 0.5266 4.8977 18 1 1.5937 0.3748 4.4735 19 6 3.6253 -0.3000 4.1111 20 6 3.7778 -1.5795 4.9754 21 6 3.6327 -1.0067 6.4073 22 7 2.6134 0.0517 6.2889 23 6 1.8223 0.5154 7.3060 24 1 1.1483 1.3412 7.1324 25 6 1.8867 -0.0761 8.5602 26 7 2.7085 -1.0822 8.7718 27 14 0.8071 0.5558 9.9474 28 1 -0.0216 1.6853 9.4545 29 1 -0.0789 -0.5372 10.4224 30 1 1.6631 1.0214 11.0680 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 -0.3633 0.5138 -0.8901 34 1 1.8934 -0.5137 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 2.8912 4.1903 -1.3395 37 1 3.2703 4.0258 2.0834 38 1 2.6486 4.5807 3.6576 39 1 5.4008 3.3776 3.1019 40 1 5.0487 5.0687 3.5328 41 1 5.8136 3.8107 5.5185 42 1 4.1148 4.3055 5.7104 43 1 4.4543 1.9370 6.3922 44 1 5.0594 1.5648 4.7596 45 1 4.5726 0.2351 4.0437 46 1 3.2495 -0.5476 3.1184 47 1 4.7591 -2.0322 4.8333 48 1 2.9842 -2.2945 4.7582 49 1 3.2954 -1.7831 7.0941 50 1 4.5800 -0.5872 6.7459 51 1 2.7537 -1.4954 9.6483 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025269793.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:03:01 Heat of formation + Delta-G solvation = 53.830985 kcal Electronic energy + Delta-G solvation = -33569.139474 eV Core-core repulsion = 29472.626981 eV Total energy + Delta-G solvation = -4096.512493 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.60913 -40.50921 -37.52369 -36.80818 -35.71143 -33.14056 -32.66442 -32.48803 -31.20858 -29.65233 -29.18085 -27.12032 -25.25439 -24.43459 -24.15912 -23.51876 -22.93378 -21.50070 -20.81322 -20.20995 -19.67905 -18.71921 -17.34053 -17.13803 -16.98034 -16.24524 -15.59632 -15.32104 -15.09841 -14.73722 -14.53174 -14.27580 -14.13917 -13.88630 -13.67016 -13.50979 -13.35453 -13.03228 -12.95638 -12.69032 -12.01643 -11.80417 -11.62798 -11.55683 -11.37930 -11.31255 -11.23296 -11.04704 -11.00418 -10.85137 -10.82797 -10.60769 -10.51418 -10.23445 -10.09736 -9.99856 -9.73611 -9.57789 -9.31945 -8.93514 -8.87814 -8.57705 -8.19175 -6.69951 -5.55303 -2.99392 0.78294 2.31429 2.33426 3.11750 3.21935 3.41976 3.48035 3.49980 3.87836 4.48991 4.55321 4.60012 4.84304 4.95483 5.07828 5.14030 5.31384 5.34878 5.40159 5.41032 5.45816 5.49869 5.52412 5.64501 5.77410 5.83949 5.86965 5.94055 5.95970 5.99595 6.04726 6.07386 6.13563 6.16802 6.20587 6.29590 6.32550 6.40644 6.49223 6.59148 6.73648 6.79889 6.94356 6.99393 7.01828 7.36933 7.48285 7.58443 7.64018 7.73046 7.98071 8.27578 8.51273 9.31131 9.93081 10.59200 11.44506 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013376 B = 0.003907 C = 0.003487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2092.749757 B = 7165.301413 C = 8027.759321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.052 4.052 3 C 0.074 3.926 4 N -0.490 5.490 5 C 0.178 3.822 6 O -0.186 6.186 7 C -0.099 4.099 8 C 0.590 3.410 9 O -0.482 6.482 10 N -0.591 5.591 11 C 0.090 3.910 12 C -0.130 4.130 13 C -0.122 4.122 14 C -0.123 4.123 15 C 0.136 3.864 16 H 0.073 0.927 17 C 0.159 3.841 18 H 0.082 0.918 19 C -0.128 4.128 20 C -0.146 4.146 21 C 0.145 3.855 22 N -0.593 5.593 23 C -0.215 4.215 24 H 0.074 0.926 25 C -0.011 4.011 26 N -0.919 5.919 27 Si 0.909 3.091 28 H -0.281 1.281 29 H -0.291 1.291 30 H -0.292 1.292 31 H 0.064 0.936 32 H 0.059 0.941 33 H 0.051 0.949 34 H 0.077 0.923 35 H 0.103 0.897 36 H 0.250 0.750 37 H 0.103 0.897 38 H 0.068 0.932 39 H 0.063 0.937 40 H 0.069 0.931 41 H 0.060 0.940 42 H 0.061 0.939 43 H 0.089 0.911 44 H 0.064 0.936 45 H 0.052 0.948 46 H 0.077 0.923 47 H 0.048 0.952 48 H 0.056 0.944 49 H 0.112 0.888 50 H 0.003 0.997 51 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.238 10.001 -17.715 20.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.090 4.090 3 C -0.050 4.050 4 N -0.218 5.218 5 C -0.046 4.046 6 O -0.074 6.074 7 C -0.154 4.154 8 C 0.376 3.624 9 O -0.358 6.358 10 N -0.323 5.323 11 C -0.033 4.033 12 C -0.168 4.168 13 C -0.159 4.159 14 C -0.161 4.161 15 C 0.033 3.967 16 H 0.091 0.909 17 C 0.051 3.949 18 H 0.099 0.901 19 C -0.165 4.165 20 C -0.184 4.184 21 C 0.020 3.980 22 N -0.317 5.317 23 C -0.344 4.344 24 H 0.092 0.908 25 C -0.206 4.206 26 N -0.568 5.568 27 Si 0.740 3.260 28 H -0.207 1.207 29 H -0.219 1.219 30 H -0.220 1.220 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.070 0.930 34 H 0.096 0.904 35 H 0.121 0.879 36 H 0.266 0.734 37 H 0.120 0.880 38 H 0.087 0.913 39 H 0.082 0.918 40 H 0.088 0.912 41 H 0.079 0.921 42 H 0.080 0.920 43 H 0.108 0.892 44 H 0.083 0.917 45 H 0.070 0.930 46 H 0.095 0.905 47 H 0.067 0.933 48 H 0.075 0.925 49 H 0.129 0.871 50 H 0.021 0.979 51 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 2.832 9.265 -17.878 20.334 hybrid contribution -0.104 1.113 1.284 1.703 sum 2.728 10.377 -16.593 19.760 Atomic orbital electron populations 1.21621 0.93852 1.02259 1.01887 1.20175 0.96693 0.87728 1.04410 1.22025 0.98233 0.98283 0.86432 1.70311 1.17270 1.02689 1.31568 1.28372 0.97496 0.98058 0.80705 1.84649 1.65522 1.33415 1.23778 1.23503 1.10531 0.84402 0.96936 1.16593 0.80289 0.84587 0.80902 1.90887 1.45224 1.20799 1.78927 1.48165 1.61132 1.13761 1.09265 1.22248 0.95563 0.83240 1.02219 1.21875 0.96169 1.01365 0.97376 1.21574 1.01333 0.97844 0.95178 1.21947 0.96008 0.94826 1.03354 1.22273 0.96788 0.99558 0.78115 0.90858 1.21691 0.99271 0.87991 0.85915 0.90113 1.23023 0.97661 0.96761 0.99071 1.22967 0.99241 0.96851 0.99389 1.22056 0.90481 0.93022 0.92391 1.44707 1.41565 1.41444 1.04033 1.19076 1.14794 1.11867 0.88625 0.90766 1.24748 0.99738 0.98507 0.97651 1.69752 1.39922 1.25683 1.21474 0.86079 0.79756 0.77812 0.82360 1.20677 1.21851 1.21957 0.91728 0.92227 0.92990 0.90400 0.87891 0.73391 0.87982 0.91345 0.91832 0.91206 0.92104 0.92030 0.89233 0.91717 0.92954 0.90511 0.93292 0.92479 0.87081 0.97861 0.93962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 9.89 37.16 0.37 -1.25 16 2 C -0.05 -0.65 6.00 -27.88 -0.17 -0.82 16 3 C 0.07 0.98 6.41 -82.46 -0.53 0.45 16 4 N -0.49 -5.87 11.26 -10.88 -0.12 -5.99 16 5 C 0.18 1.56 13.21 52.25 0.69 2.25 16 6 O -0.19 -2.02 7.26 4.45 0.03 -1.99 16 7 C -0.10 -1.35 6.89 -36.84 -0.25 -1.60 16 8 C 0.59 9.35 6.88 -12.83 -0.09 9.27 16 9 O -0.48 -8.67 8.09 5.20 0.04 -8.63 16 10 N -0.59 -9.04 2.94 -166.73 -0.49 -9.53 16 11 C 0.09 1.07 6.34 -3.71 -0.02 1.05 16 12 C -0.13 -1.44 6.08 -26.62 -0.16 -1.60 16 13 C -0.12 -1.61 5.88 -26.67 -0.16 -1.77 16 14 C -0.12 -2.10 4.98 -26.59 -0.13 -2.23 16 15 C 0.14 2.48 2.68 -67.60 -0.18 2.30 16 16 H 0.07 1.47 7.75 -51.93 -0.40 1.06 16 17 C 0.16 3.36 2.28 -66.95 -0.15 3.21 16 18 H 0.08 1.90 5.74 -52.91 -0.30 1.60 16 19 C -0.13 -2.47 5.00 -24.90 -0.12 -2.59 16 20 C -0.15 -3.01 7.08 -24.59 -0.17 -3.19 16 21 C 0.15 3.58 6.05 -2.54 -0.02 3.57 16 22 N -0.59 -14.86 2.67 -162.58 -0.43 -15.29 16 23 C -0.21 -5.85 9.80 -15.06 -0.15 -6.00 16 24 H 0.07 1.98 7.66 -52.49 -0.40 1.58 16 25 C -0.01 -0.31 5.48 -17.43 -0.10 -0.41 16 26 N -0.92 -26.66 10.03 55.49 0.56 -26.10 16 27 Si 0.91 22.07 29.55 -169.99 -5.02 17.05 16 28 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 29 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 30 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.05 0.57 8.14 -51.92 -0.42 0.15 16 34 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.10 1.42 6.34 -51.93 -0.33 1.09 16 36 H 0.25 0.78 8.06 -52.49 -0.42 0.36 16 37 H 0.10 1.11 3.76 -55.13 -0.21 0.90 16 38 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 42 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.09 1.81 7.91 -51.93 -0.41 1.40 16 44 H 0.06 1.12 5.64 -51.93 -0.29 0.82 16 45 H 0.05 0.98 5.36 -51.92 -0.28 0.70 16 46 H 0.08 1.45 5.72 -51.93 -0.30 1.16 16 47 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 48 H 0.06 1.20 8.14 -51.92 -0.42 0.78 16 49 H 0.11 3.11 5.62 -51.93 -0.29 2.82 16 50 H 0.00 0.09 8.14 -51.93 -0.42 -0.33 16 51 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 379.66 15.07 5.72 5.72 Total: -1.00 -31.09 379.66 -8.91 -40.00 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: -7.85 Total: 4.13 kcal Atomic # 6 Polarization: 1.98 SS G_CDS: -1.35 Total: 0.63 kcal Atomic # 7 Polarization: -56.43 SS G_CDS: -0.49 Total: -56.92 kcal Atomic # 8 Polarization: -10.69 SS G_CDS: 0.07 Total: -10.62 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -31.09 -8.91 -40.00 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025269793.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.836 kcal (2) G-P(sol) polarization free energy of solvation -31.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.005 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds