Wall clock time and date at job start Wed Apr 1 2020 06:03:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50703 * 109.46851 * 2 1 4 4 N 1.33694 * 126.27576 * 274.84361 * 3 2 1 5 5 C 1.30619 * 108.99405 * 180.02562 * 4 3 2 6 6 O 1.33663 * 109.15509 * 359.74635 * 5 4 3 7 7 C 1.35336 * 107.68383 * 0.40284 * 6 5 4 8 8 C 1.46727 * 126.64170 * 179.87445 * 7 6 5 9 9 O 1.21685 * 119.99717 * 173.84186 * 8 7 6 10 10 N 1.34771 * 120.00090 * 353.83626 * 8 7 6 11 11 C 1.46930 * 120.62916 * 6.24401 * 10 8 7 12 12 C 1.53187 * 108.77295 * 233.62445 * 11 10 8 13 13 C 1.53038 * 109.31556 * 305.36648 * 12 11 10 14 14 C 1.53072 * 109.66178 * 61.29895 * 13 12 11 15 15 C 1.46930 * 120.63269 * 186.25670 * 10 8 7 16 16 H 1.08996 * 109.59063 * 246.30650 * 15 10 8 17 17 C 1.52999 * 109.58369 * 6.59090 * 15 10 8 18 18 H 1.09003 * 109.87321 * 304.08395 * 17 15 10 19 19 C 1.54323 * 110.01520 * 65.18142 * 17 15 10 20 20 C 1.55157 * 102.94135 * 141.67906 * 19 17 15 21 21 C 1.54903 * 101.58456 * 324.50051 * 20 19 17 22 22 N 1.47025 * 109.88122 * 183.06662 * 17 15 10 23 23 C 1.36942 * 125.64445 * 61.52024 * 22 17 15 24 24 H 1.07998 * 120.00037 * 355.94363 * 23 22 17 25 25 C 1.38814 * 119.99747 * 175.93662 * 23 22 17 26 26 N 1.31619 * 119.99771 * 0.02562 * 25 23 22 27 27 Si 1.86794 * 120.00067 * 180.02562 * 25 23 22 28 28 H 1.48508 * 109.47059 * 0.02562 * 27 25 23 29 29 H 1.48499 * 109.47403 * 119.99929 * 27 25 23 30 30 H 1.48498 * 109.47353 * 240.00044 * 27 25 23 31 31 H 1.09002 * 109.46768 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47465 * 300.00380 * 1 2 3 33 33 H 1.09008 * 109.47059 * 60.00335 * 1 2 3 34 34 H 1.08991 * 109.47357 * 240.00356 * 2 1 3 35 35 H 1.08998 * 109.47119 * 119.99671 * 2 1 3 36 36 H 1.08002 * 125.41979 * 180.02562 * 5 4 3 37 37 H 1.08997 * 109.58542 * 353.41333 * 11 10 8 38 38 H 1.09002 * 109.58932 * 113.69873 * 11 10 8 39 39 H 1.09002 * 109.49918 * 65.31512 * 12 11 10 40 40 H 1.09002 * 109.49927 * 185.37723 * 12 11 10 41 41 H 1.09001 * 109.46330 * 181.39069 * 13 12 11 42 42 H 1.09005 * 109.46066 * 301.35511 * 13 12 11 43 43 H 1.08993 * 109.62499 * 178.83193 * 14 13 12 44 44 H 1.09000 * 109.39171 * 58.72310 * 14 13 12 45 45 H 1.09008 * 110.71483 * 23.31888 * 19 17 15 46 46 H 1.08999 * 110.72090 * 260.05062 * 19 17 15 47 47 H 1.08998 * 111.00413 * 206.42489 * 20 19 17 48 48 H 1.09007 * 111.00086 * 82.57845 * 20 19 17 49 49 H 1.08997 * 110.36751 * 155.84777 * 21 20 19 50 50 H 1.08995 * 110.36788 * 278.05982 * 21 20 19 51 51 H 0.97002 * 119.99817 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2101 2.1970 -1.0740 5 6 2.6572 3.3618 -0.6874 6 8 2.7732 3.3671 0.6442 7 6 2.3891 2.1503 1.0952 8 6 2.3568 1.7046 2.4928 9 8 1.8835 0.6195 2.7745 10 7 2.8513 2.4969 3.4644 11 6 3.3006 3.8624 3.1606 12 6 4.7367 4.0328 3.6658 13 6 4.7978 3.6667 5.1504 14 6 4.3906 2.2030 5.3372 15 6 2.9517 2.0114 4.8475 16 1 2.2709 2.5770 5.4837 17 6 2.5862 0.5266 4.8977 18 1 1.5937 0.3748 4.4735 19 6 3.6253 -0.3000 4.1111 20 6 3.7778 -1.5795 4.9754 21 6 3.6327 -1.0067 6.4073 22 7 2.6134 0.0517 6.2889 23 6 1.8223 0.5154 7.3060 24 1 1.1483 1.3412 7.1324 25 6 1.8867 -0.0761 8.5602 26 7 2.7085 -1.0822 8.7718 27 14 0.8071 0.5558 9.9474 28 1 -0.0216 1.6853 9.4545 29 1 -0.0789 -0.5372 10.4224 30 1 1.6631 1.0214 11.0680 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 -0.3633 0.5138 -0.8901 34 1 1.8934 -0.5137 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 2.8912 4.1903 -1.3395 37 1 3.2703 4.0258 2.0834 38 1 2.6486 4.5807 3.6576 39 1 5.4008 3.3776 3.1019 40 1 5.0487 5.0687 3.5328 41 1 5.8136 3.8107 5.5185 42 1 4.1148 4.3055 5.7104 43 1 4.4543 1.9370 6.3922 44 1 5.0594 1.5648 4.7596 45 1 4.5726 0.2351 4.0437 46 1 3.2495 -0.5476 3.1184 47 1 4.7591 -2.0322 4.8333 48 1 2.9842 -2.2945 4.7582 49 1 3.2954 -1.7831 7.0941 50 1 4.5800 -0.5872 6.7459 51 1 2.7537 -1.4954 9.6483 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025269793.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:03:00 Heat of formation + Delta-G solvation = 33.870946 kcal Electronic energy + Delta-G solvation = -33570.005007 eV Core-core repulsion = 29472.626981 eV Total energy + Delta-G solvation = -4097.378026 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -44.48644 -41.83439 -38.92305 -38.27513 -36.64805 -34.61337 -34.02282 -33.76983 -32.61025 -31.16906 -30.59448 -28.61962 -26.68984 -26.21937 -25.20721 -24.47326 -24.15372 -22.60934 -22.20779 -21.54950 -21.23155 -20.06411 -18.98611 -18.20357 -17.88597 -17.58445 -16.96645 -16.91799 -16.31447 -16.05891 -15.98086 -15.66575 -15.29935 -15.23380 -14.86236 -14.73498 -14.53898 -14.41517 -14.14829 -13.84513 -13.66479 -13.48108 -13.15738 -13.04966 -12.84135 -12.75631 -12.59349 -12.49044 -12.17727 -12.07304 -12.04620 -11.95436 -11.94002 -11.71673 -11.66608 -11.36693 -11.30242 -11.19040 -11.13017 -10.73791 -10.34210 -9.93861 -9.49170 -8.73262 -7.68044 -5.14004 -0.15787 1.36702 1.45517 1.46882 1.47849 1.56271 1.99421 2.09594 2.52732 3.15463 3.34325 3.49875 3.67802 3.78093 3.87408 3.92450 3.94760 4.08186 4.19160 4.26770 4.30060 4.35106 4.35883 4.40271 4.44212 4.48966 4.56895 4.63552 4.72483 4.79224 4.87800 4.93742 4.97880 5.02982 5.04622 5.06509 5.15791 5.19631 5.23525 5.25445 5.28468 5.33686 5.42137 5.48300 5.51096 5.58185 5.71060 5.82999 5.90586 6.30303 6.41862 6.60366 7.04597 7.19336 7.87715 8.52979 9.30360 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013376 B = 0.003907 C = 0.003487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2092.749757 B = 7165.301413 C = 8027.759321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.054 4.054 3 C 0.076 3.924 4 N -0.520 5.520 5 C 0.216 3.784 6 O -0.184 6.184 7 C -0.123 4.123 8 C 0.587 3.413 9 O -0.515 6.515 10 N -0.592 5.592 11 C 0.085 3.915 12 C -0.120 4.120 13 C -0.117 4.117 14 C -0.114 4.114 15 C 0.149 3.851 16 H 0.049 0.951 17 C 0.158 3.842 18 H 0.058 0.942 19 C -0.110 4.110 20 C -0.136 4.136 21 C 0.151 3.849 22 N -0.609 5.609 23 C -0.221 4.221 24 H 0.073 0.927 25 C -0.066 4.066 26 N -0.947 5.947 27 Si 0.972 3.028 28 H -0.270 1.270 29 H -0.295 1.295 30 H -0.292 1.292 31 H 0.074 0.926 32 H 0.038 0.962 33 H 0.059 0.941 34 H 0.091 0.909 35 H 0.084 0.916 36 H 0.308 0.692 37 H 0.122 0.878 38 H 0.075 0.925 39 H 0.063 0.937 40 H 0.105 0.895 41 H 0.074 0.926 42 H 0.060 0.940 43 H 0.048 0.952 44 H 0.062 0.938 45 H 0.062 0.938 46 H 0.085 0.915 47 H 0.074 0.926 48 H 0.050 0.950 49 H 0.078 0.922 50 H -0.015 1.015 51 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.000 12.790 -20.618 24.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.092 4.092 3 C -0.047 4.047 4 N -0.248 5.248 5 C -0.008 4.008 6 O -0.072 6.072 7 C -0.178 4.178 8 C 0.375 3.625 9 O -0.394 6.394 10 N -0.324 5.324 11 C -0.035 4.035 12 C -0.158 4.158 13 C -0.155 4.155 14 C -0.152 4.152 15 C 0.044 3.956 16 H 0.067 0.933 17 C 0.052 3.948 18 H 0.075 0.925 19 C -0.147 4.147 20 C -0.175 4.175 21 C 0.026 3.974 22 N -0.334 5.334 23 C -0.350 4.350 24 H 0.091 0.909 25 C -0.258 4.258 26 N -0.597 5.597 27 Si 0.801 3.199 28 H -0.195 1.195 29 H -0.222 1.222 30 H -0.219 1.219 31 H 0.093 0.907 32 H 0.057 0.943 33 H 0.078 0.922 34 H 0.109 0.891 35 H 0.103 0.897 36 H 0.322 0.678 37 H 0.139 0.861 38 H 0.094 0.906 39 H 0.082 0.918 40 H 0.124 0.876 41 H 0.093 0.907 42 H 0.079 0.921 43 H 0.067 0.933 44 H 0.081 0.919 45 H 0.080 0.920 46 H 0.103 0.897 47 H 0.093 0.907 48 H 0.069 0.931 49 H 0.095 0.905 50 H 0.003 0.997 51 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 3.595 12.092 -20.829 24.352 hybrid contribution -0.366 0.315 2.020 2.077 sum 3.229 12.407 -18.810 22.763 Atomic orbital electron populations 1.21555 0.93438 1.02784 1.01151 1.20163 0.97021 0.87898 1.04109 1.22138 0.97210 0.98464 0.86893 1.70363 1.19325 1.03947 1.31177 1.29689 0.93017 0.98095 0.80001 1.84585 1.65660 1.32037 1.24901 1.22811 1.13492 0.85848 0.95619 1.16844 0.79457 0.84247 0.81928 1.90857 1.46513 1.22195 1.79834 1.48138 1.61337 1.15224 1.07738 1.22529 0.96255 0.81147 1.03607 1.21844 0.95444 1.03470 0.95043 1.21547 1.01931 0.94639 0.97357 1.21782 0.95057 0.97862 1.00506 1.21705 0.96991 0.96941 0.79926 0.93286 1.21692 0.98889 0.90398 0.83855 0.92506 1.22893 0.97449 0.95588 0.98784 1.22859 1.00464 0.97310 0.96843 1.21804 0.89374 0.92117 0.94154 1.44897 1.41349 1.41943 1.05162 1.19332 1.14687 1.11531 0.89469 0.90911 1.25502 1.01322 0.99104 0.99868 1.70000 1.41400 1.26880 1.21465 0.85096 0.78082 0.77339 0.79387 1.19451 1.22194 1.21915 0.90674 0.94296 0.92170 0.89064 0.89714 0.67783 0.86134 0.90650 0.91797 0.87635 0.90718 0.92132 0.93296 0.91930 0.91956 0.89660 0.90713 0.93083 0.90468 0.99692 0.94597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.02 9.89 71.98 0.71 -2.31 16 2 C -0.05 -1.32 6.00 29.85 0.18 -1.14 16 3 C 0.08 1.89 6.41 41.83 0.27 2.16 16 4 N -0.52 -10.76 11.26 -303.12 -3.41 -14.17 16 5 C 0.22 2.75 13.21 130.42 1.72 4.47 16 6 O -0.18 -3.30 7.26 -6.99 -0.05 -3.35 16 7 C -0.12 -3.14 6.89 24.05 0.17 -2.98 16 8 C 0.59 18.46 6.88 86.46 0.60 19.06 16 9 O -0.51 -19.09 8.09 -4.30 -0.03 -19.12 16 10 N -0.59 -17.78 2.94 -799.65 -2.35 -20.14 16 11 C 0.09 1.82 6.34 86.36 0.55 2.37 16 12 C -0.12 -2.26 6.08 30.67 0.19 -2.07 16 13 C -0.12 -2.91 5.88 30.63 0.18 -2.73 16 14 C -0.11 -3.93 4.98 30.68 0.15 -3.77 16 15 C 0.15 5.57 2.68 44.97 0.12 5.69 16 16 H 0.05 2.05 7.75 -2.39 -0.02 2.03 16 17 C 0.16 6.96 2.28 45.34 0.10 7.07 16 18 H 0.06 2.83 5.74 -18.00 -0.10 2.73 16 19 C -0.11 -4.31 5.00 31.78 0.16 -4.15 16 20 C -0.14 -5.76 7.08 31.98 0.23 -5.53 16 21 C 0.15 7.82 6.05 86.85 0.53 8.35 16 22 N -0.61 -32.07 2.67 -668.28 -1.78 -33.85 16 23 C -0.22 -12.57 9.80 84.03 0.82 -11.74 16 24 H 0.07 4.05 7.66 -2.91 -0.02 4.03 16 25 C -0.07 -3.80 5.48 84.86 0.47 -3.33 16 26 N -0.95 -57.45 10.03 21.65 0.22 -57.23 16 27 Si 0.97 46.77 29.55 68.60 2.03 48.80 16 28 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 29 H -0.29 -14.26 7.11 99.48 0.71 -13.55 16 30 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 31 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.06 1.26 8.14 -2.38 -0.02 1.24 16 34 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 35 H 0.08 2.39 6.34 -2.39 -0.02 2.37 16 36 H 0.31 -0.21 8.06 -2.91 -0.02 -0.23 16 37 H 0.12 2.16 3.76 -53.09 -0.20 1.96 16 38 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 42 H 0.06 1.53 8.14 -2.38 -0.02 1.51 16 43 H 0.05 2.07 7.91 -2.39 -0.02 2.05 16 44 H 0.06 2.15 5.64 -2.39 -0.01 2.14 16 45 H 0.06 2.31 5.36 -2.38 -0.01 2.30 16 46 H 0.09 3.27 5.72 -2.39 -0.01 3.25 16 47 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 48 H 0.05 2.20 8.14 -2.38 -0.02 2.18 16 49 H 0.08 4.58 5.62 -2.39 -0.01 4.57 16 50 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16 51 H 0.24 14.40 8.31 -92.71 -0.77 13.63 16 Total: -1.00 -72.72 379.66 2.41 -70.31 By element: Atomic # 1 Polarization: 18.69 SS G_CDS: 0.66 Total: 19.35 kcal Atomic # 6 Polarization: 2.27 SS G_CDS: 7.13 Total: 9.40 kcal Atomic # 7 Polarization: -118.07 SS G_CDS: -7.33 Total: -125.40 kcal Atomic # 8 Polarization: -22.39 SS G_CDS: -0.09 Total: -22.47 kcal Atomic # 14 Polarization: 46.77 SS G_CDS: 2.03 Total: 48.80 kcal Total: -72.72 2.41 -70.31 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025269793.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.180 kcal (2) G-P(sol) polarization free energy of solvation -72.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.309 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds