Wall clock time and date at job start Wed Apr 1 2020 06:03:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50708 * 109.46770 * 2 1 4 4 N 1.33690 * 126.26933 * 270.18575 * 3 2 1 5 5 C 1.30624 * 108.99427 * 180.27373 * 4 3 2 6 6 O 1.33667 * 109.15091 * 359.73153 * 5 4 3 7 7 C 1.35345 * 107.68440 * 359.97438 * 6 5 4 8 8 C 1.46720 * 126.64102 * 180.02562 * 7 6 5 9 9 O 1.21695 * 119.99685 * 174.59137 * 8 7 6 10 10 N 1.34774 * 120.00324 * 354.59138 * 8 7 6 11 11 C 1.46925 * 120.63017 * 5.50070 * 10 8 7 12 12 C 1.53196 * 108.77497 * 233.61041 * 11 10 8 13 13 C 1.53042 * 109.31015 * 305.36372 * 12 11 10 14 14 C 1.53040 * 109.54131 * 61.36440 * 13 12 11 15 15 C 1.46928 * 120.63060 * 185.49804 * 10 8 7 16 16 H 1.09001 * 109.70467 * 246.24589 * 15 10 8 17 17 C 1.53003 * 109.58756 * 6.60707 * 15 10 8 18 18 H 1.08996 * 109.86749 * 314.27472 * 17 15 10 19 19 C 1.54323 * 110.00766 * 193.17776 * 17 15 10 20 20 C 1.55278 * 103.00646 * 218.39423 * 19 17 15 21 21 C 1.54907 * 101.52567 * 35.36359 * 20 19 17 22 22 N 1.47015 * 109.88384 * 75.29405 * 17 15 10 23 23 C 1.36949 * 125.64673 * 298.53307 * 22 17 15 24 24 H 1.07996 * 119.99930 * 354.66563 * 23 22 17 25 25 C 1.38807 * 119.99850 * 174.66693 * 23 22 17 26 26 N 1.31616 * 120.00315 * 0.02562 * 25 23 22 27 27 Si 1.86805 * 119.99980 * 180.02562 * 25 23 22 28 28 H 1.48494 * 109.46819 * 359.97438 * 27 25 23 29 29 H 1.48490 * 109.47159 * 120.00220 * 27 25 23 30 30 H 1.48505 * 109.47083 * 240.00388 * 27 25 23 31 31 H 1.08997 * 109.46848 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47169 * 300.00231 * 1 2 3 33 33 H 1.08997 * 109.47185 * 60.00229 * 1 2 3 34 34 H 1.08991 * 109.47454 * 240.00387 * 2 1 3 35 35 H 1.08997 * 109.47185 * 119.99771 * 2 1 3 36 36 H 1.07995 * 125.42934 * 179.71370 * 5 4 3 37 37 H 1.08999 * 109.59084 * 113.82085 * 11 10 8 38 38 H 1.09004 * 109.70408 * 353.46463 * 11 10 8 39 39 H 1.09000 * 109.49393 * 185.41406 * 12 11 10 40 40 H 1.08993 * 109.49721 * 65.31566 * 12 11 10 41 41 H 1.09004 * 109.45956 * 301.34527 * 13 12 11 42 42 H 1.08999 * 109.45610 * 181.38799 * 13 12 11 43 43 H 1.08992 * 109.49673 * 178.68104 * 14 13 12 44 44 H 1.09001 * 109.48992 * 58.58595 * 14 13 12 45 45 H 1.09004 * 110.72337 * 336.68162 * 19 17 15 46 46 H 1.09004 * 110.71640 * 99.77743 * 19 17 15 47 47 H 1.09001 * 110.95882 * 277.33773 * 20 19 17 48 48 H 1.08998 * 111.10214 * 153.45239 * 20 19 17 49 49 H 1.09005 * 110.36266 * 204.23579 * 21 20 19 50 50 H 1.08993 * 110.36833 * 82.02185 * 21 20 19 51 51 H 0.97002 * 120.00525 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2926 2.1678 -1.0779 5 6 2.7150 3.3414 -0.6900 6 8 2.7318 3.3819 0.6460 7 6 2.3006 2.1816 1.0991 8 6 2.1563 1.7756 2.5016 9 8 1.6631 0.6972 2.7751 10 7 2.5698 2.5969 3.4870 11 6 3.0556 3.9491 3.1799 12 6 4.4429 4.1283 3.8047 13 6 4.3692 3.8113 5.3001 14 6 3.9363 2.3563 5.4943 15 6 2.5434 2.1570 4.8886 16 1 1.8151 2.7469 5.4452 17 6 2.1625 0.6766 4.9545 18 1 1.3115 0.4836 4.3013 19 6 1.8098 0.2862 6.4053 20 6 2.4131 -1.1381 6.5405 21 6 3.6925 -1.0157 5.6756 22 7 3.3054 -0.1525 4.5450 23 6 3.9106 -0.1268 3.3168 24 1 3.4988 0.4807 2.5245 25 6 5.0533 -0.8816 3.0902 26 7 5.5549 -1.6223 4.0556 27 14 5.8792 -0.8460 1.4150 28 1 5.1243 0.0574 0.5101 29 1 7.2718 -0.3514 1.5602 30 1 5.8977 -2.2163 0.8430 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 1.8934 -0.5137 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 3.0048 4.1501 -1.3444 37 1 2.3696 4.6870 3.5956 38 1 3.1218 4.0793 2.0997 39 1 4.7737 5.1577 3.6668 40 1 5.1487 3.4513 3.3236 41 1 3.6448 4.4723 5.7762 42 1 5.3497 3.9619 5.7519 43 1 3.9067 2.1245 6.5589 44 1 4.6471 1.6960 4.9973 45 1 2.2778 0.9702 7.1134 46 1 0.7292 0.2661 6.5474 47 1 1.7361 -1.8887 6.1325 48 1 2.6626 -1.3619 7.5777 49 1 4.0020 -1.9968 5.3153 50 1 4.4952 -0.5524 6.2492 51 1 6.3536 -2.1495 3.8974 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025269794.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:03:04 Heat of formation + Delta-G solvation = 74.103770 kcal Electronic energy + Delta-G solvation = -34887.131987 eV Core-core repulsion = 30791.498587 eV Total energy + Delta-G solvation = -4095.633399 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.26743 -40.31931 -37.26295 -36.67160 -35.37640 -32.80626 -32.44628 -32.34809 -31.08664 -29.29866 -28.99984 -27.18620 -25.17818 -24.26072 -23.89385 -23.19044 -22.67418 -21.28008 -20.30603 -20.07018 -19.49349 -18.87118 -17.15315 -16.87684 -16.77159 -16.12018 -15.69707 -15.11824 -14.82088 -14.42633 -14.10207 -14.02353 -13.96867 -13.77863 -13.43928 -13.20615 -13.06608 -12.88302 -12.64224 -12.38475 -11.96895 -11.79972 -11.74695 -11.29352 -11.22696 -11.03229 -10.95826 -10.86373 -10.81194 -10.70174 -10.66366 -10.47047 -10.32857 -10.05848 -10.01917 -9.93986 -9.75401 -9.57818 -9.08347 -8.63807 -8.50234 -8.24128 -7.96566 -6.52277 -5.52153 -2.83444 1.15509 2.64428 2.69206 3.39214 3.42672 3.50753 3.51664 3.68109 4.19658 4.61433 4.81793 4.96463 5.09893 5.19857 5.28813 5.41317 5.49213 5.58355 5.62358 5.66341 5.68301 5.70447 5.75749 5.76622 5.81067 5.84131 5.97850 6.04194 6.07673 6.19931 6.23347 6.24977 6.30133 6.39349 6.44515 6.48193 6.49342 6.52603 6.57912 6.66691 6.73677 6.79459 6.87384 7.03637 7.30734 7.53764 7.69971 7.71818 7.81942 7.92424 8.01264 8.49729 8.71488 9.40359 10.03398 10.70961 11.56261 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009411 B = 0.006469 C = 0.005586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2974.452656 B = 4327.334589 C = 5011.085337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.055 4.055 3 C 0.076 3.924 4 N -0.490 5.490 5 C 0.171 3.829 6 O -0.189 6.189 7 C -0.098 4.098 8 C 0.612 3.388 9 O -0.465 6.465 10 N -0.589 5.589 11 C 0.093 3.907 12 C -0.131 4.131 13 C -0.117 4.117 14 C -0.126 4.126 15 C 0.144 3.856 16 H 0.055 0.945 17 C 0.122 3.878 18 H 0.112 0.888 19 C -0.130 4.130 20 C -0.145 4.145 21 C 0.164 3.836 22 N -0.578 5.578 23 C -0.192 4.192 24 H 0.087 0.913 25 C -0.019 4.019 26 N -0.925 5.925 27 Si 0.889 3.111 28 H -0.283 1.283 29 H -0.296 1.296 30 H -0.292 1.292 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.047 0.953 34 H 0.074 0.926 35 H 0.111 0.889 36 H 0.248 0.752 37 H 0.062 0.938 38 H 0.102 0.898 39 H 0.064 0.936 40 H 0.070 0.930 41 H 0.051 0.949 42 H 0.057 0.943 43 H 0.060 0.940 44 H 0.102 0.898 45 H 0.054 0.946 46 H 0.054 0.946 47 H 0.056 0.944 48 H 0.051 0.949 49 H 0.089 0.911 50 H 0.011 0.989 51 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.290 12.238 -1.652 14.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.093 4.093 3 C -0.047 4.047 4 N -0.219 5.219 5 C -0.054 4.054 6 O -0.076 6.076 7 C -0.152 4.152 8 C 0.399 3.601 9 O -0.342 6.342 10 N -0.321 5.321 11 C -0.029 4.029 12 C -0.169 4.169 13 C -0.155 4.155 14 C -0.164 4.164 15 C 0.039 3.961 16 H 0.073 0.927 17 C 0.015 3.985 18 H 0.128 0.872 19 C -0.168 4.168 20 C -0.184 4.184 21 C 0.039 3.961 22 N -0.301 5.301 23 C -0.321 4.321 24 H 0.105 0.895 25 C -0.214 4.214 26 N -0.575 5.575 27 Si 0.721 3.279 28 H -0.208 1.208 29 H -0.223 1.223 30 H -0.219 1.219 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.066 0.934 34 H 0.093 0.907 35 H 0.129 0.871 36 H 0.264 0.736 37 H 0.080 0.920 38 H 0.119 0.881 39 H 0.083 0.917 40 H 0.089 0.911 41 H 0.070 0.930 42 H 0.076 0.924 43 H 0.079 0.921 44 H 0.121 0.879 45 H 0.073 0.927 46 H 0.072 0.928 47 H 0.075 0.925 48 H 0.070 0.930 49 H 0.107 0.893 50 H 0.029 0.971 51 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -7.424 11.434 -2.203 13.810 hybrid contribution 1.139 0.654 -0.353 1.361 sum -6.285 12.088 -2.556 13.862 Atomic orbital electron populations 1.21588 0.94170 1.01925 1.01438 1.20193 0.96205 0.87912 1.04944 1.21966 0.98396 0.98033 0.86292 1.70273 1.16703 1.03118 1.31832 1.28268 0.98636 0.97755 0.80739 1.84621 1.65004 1.34630 1.23348 1.23747 1.09657 0.84646 0.97189 1.16299 0.79236 0.83749 0.80782 1.90828 1.44650 1.20584 1.78128 1.47739 1.63256 1.14019 1.07104 1.22164 0.95214 0.83547 1.02017 1.21859 0.97088 1.01140 0.96843 1.21528 1.00720 0.97832 0.95410 1.21922 0.98308 0.95648 1.00531 1.22083 0.96509 0.98912 0.78577 0.92689 1.22408 0.95537 0.87006 0.93526 0.87191 1.22676 0.98939 0.97737 0.97461 1.22997 1.00504 0.95628 0.99277 1.21644 0.90151 0.97674 0.86637 1.44302 1.33612 1.41748 1.10389 1.19569 1.03161 1.21352 0.88024 0.89533 1.24714 0.98595 1.01189 0.96861 1.69894 1.23883 1.33498 1.30240 0.86337 0.79441 0.77415 0.84687 1.20843 1.22314 1.21924 0.91965 0.92327 0.93388 0.90719 0.87116 0.73630 0.92011 0.88065 0.91713 0.91102 0.93009 0.92408 0.92114 0.87940 0.92737 0.92763 0.92531 0.93035 0.89334 0.97056 0.94373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.97 9.89 37.16 0.37 -1.60 16 2 C -0.05 -0.97 5.87 -27.88 -0.16 -1.13 16 3 C 0.08 1.39 6.41 -82.46 -0.53 0.86 16 4 N -0.49 -8.06 11.26 -10.88 -0.12 -8.18 16 5 C 0.17 2.19 13.21 52.25 0.69 2.88 16 6 O -0.19 -2.82 7.26 4.41 0.03 -2.78 16 7 C -0.10 -1.77 6.73 -36.84 -0.25 -2.02 16 8 C 0.61 11.92 4.74 -12.84 -0.06 11.86 16 9 O -0.47 -10.01 8.38 5.19 0.04 -9.96 16 10 N -0.59 -10.37 2.83 -166.73 -0.47 -10.84 16 11 C 0.09 1.33 6.33 -3.71 -0.02 1.31 16 12 C -0.13 -1.85 6.08 -26.61 -0.16 -2.01 16 13 C -0.12 -1.69 5.88 -26.69 -0.16 -1.85 16 14 C -0.13 -2.25 4.94 -26.61 -0.13 -2.38 16 15 C 0.14 2.55 2.53 -67.60 -0.17 2.38 16 16 H 0.06 0.88 8.09 -51.93 -0.42 0.46 16 17 C 0.12 2.47 2.32 -66.96 -0.16 2.32 16 18 H 0.11 2.43 4.87 -56.98 -0.28 2.15 16 19 C -0.13 -2.29 6.33 -24.83 -0.16 -2.45 16 20 C -0.15 -2.81 7.10 -24.52 -0.17 -2.99 16 21 C 0.16 3.93 5.67 -2.53 -0.01 3.91 16 22 N -0.58 -13.88 1.92 -162.58 -0.31 -14.19 16 23 C -0.19 -5.07 7.54 -15.06 -0.11 -5.19 16 24 H 0.09 2.25 3.39 -52.49 -0.18 2.07 16 25 C -0.02 -0.54 5.48 -17.43 -0.10 -0.64 16 26 N -0.92 -27.02 10.22 55.49 0.57 -26.45 16 27 Si 0.89 22.90 29.55 -169.99 -5.02 17.87 16 28 H -0.28 -7.24 7.11 56.52 0.40 -6.84 16 29 H -0.30 -7.70 7.11 56.52 0.40 -7.30 16 30 H -0.29 -7.64 7.11 56.52 0.40 -7.24 16 31 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.11 2.27 6.61 -51.93 -0.34 1.92 16 36 H 0.25 1.66 8.06 -52.49 -0.42 1.24 16 37 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.10 1.43 3.77 -55.13 -0.21 1.22 16 39 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 41 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 42 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.06 1.05 7.10 -51.93 -0.37 0.68 16 44 H 0.10 2.33 6.40 -51.93 -0.33 2.00 16 45 H 0.05 0.90 6.77 -51.93 -0.35 0.55 16 46 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 47 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 48 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 49 H 0.09 2.44 6.24 -51.93 -0.32 2.11 16 50 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 51 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 375.27 15.07 5.66 5.66 Total: -1.00 -31.58 375.27 -8.79 -40.36 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: -7.86 Total: 5.25 kcal Atomic # 6 Polarization: 4.57 SS G_CDS: -1.30 Total: 3.27 kcal Atomic # 7 Polarization: -59.33 SS G_CDS: -0.34 Total: -59.67 kcal Atomic # 8 Polarization: -12.82 SS G_CDS: 0.08 Total: -12.75 kcal Atomic # 14 Polarization: 22.90 SS G_CDS: -5.02 Total: 17.87 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.58 -8.79 -40.36 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025269794.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.468 kcal (2) G-P(sol) polarization free energy of solvation -31.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.364 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds