Wall clock time and date at job start Wed Apr 1 2020 05:38:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50697 * 109.47220 * 2 1 4 4 O 1.33486 * 126.83325 * 270.10766 * 3 2 1 5 5 N 1.20661 * 113.15996 * 180.30377 * 4 3 2 6 6 C 1.30018 * 112.29778 * 359.75865 * 5 4 3 7 7 C 1.37360 * 126.82809 * 90.00725 * 3 2 1 8 8 C 1.47401 * 128.56002 * 359.97438 * 7 3 2 9 9 O 1.21610 * 120.00489 * 33.66856 * 8 7 3 10 10 N 1.34785 * 119.99748 * 213.66215 * 8 7 3 11 11 C 1.46962 * 120.65308 * 6.53186 * 10 8 7 12 12 C 1.53185 * 108.88757 * 126.46114 * 11 10 8 13 13 C 1.53040 * 109.31604 * 54.55652 * 12 11 10 14 14 C 1.53039 * 109.53461 * 298.63364 * 13 12 11 15 15 C 1.46930 * 120.62952 * 186.34143 * 10 8 7 16 16 H 1.08998 * 109.58069 * 113.68118 * 15 10 8 17 17 C 1.53000 * 109.58431 * 353.40178 * 15 10 8 18 18 H 1.08994 * 110.00115 * 315.40989 * 17 15 10 19 19 C 1.54312 * 109.77545 * 76.56812 * 17 15 10 20 20 C 1.55154 * 102.86262 * 141.88072 * 19 17 15 21 21 C 1.54902 * 101.58554 * 324.30288 * 20 19 17 22 22 N 1.47023 * 109.87674 * 194.31528 * 17 15 10 23 23 C 1.36931 * 125.65159 * 61.67839 * 22 17 15 24 24 H 1.08000 * 120.00012 * 18.46309 * 23 22 17 25 25 C 1.38813 * 120.00559 * 198.45563 * 23 22 17 26 26 N 1.31627 * 119.99696 * 0.02562 * 25 23 22 27 27 Si 1.86798 * 120.00468 * 180.02562 * 25 23 22 28 28 H 1.48500 * 109.47411 * 180.02562 * 27 25 23 29 29 H 1.48498 * 109.46722 * 300.00255 * 27 25 23 30 30 H 1.48503 * 109.47032 * 60.00070 * 27 25 23 31 31 H 1.08994 * 109.47288 * 179.97438 * 1 2 3 32 32 H 1.09008 * 109.46696 * 299.99417 * 1 2 3 33 33 H 1.09003 * 109.47139 * 59.99044 * 1 2 3 34 34 H 1.09008 * 109.46696 * 240.00583 * 2 1 3 35 35 H 1.08995 * 109.47048 * 120.00604 * 2 1 3 36 36 H 1.07995 * 127.33155 * 180.02562 * 6 5 4 37 37 H 1.09003 * 109.59565 * 6.59802 * 11 10 8 38 38 H 1.09000 * 109.46438 * 246.24177 * 11 10 8 39 39 H 1.09003 * 109.50186 * 294.60126 * 12 11 10 40 40 H 1.09002 * 109.52350 * 174.52698 * 12 11 10 41 41 H 1.09000 * 109.46193 * 178.61698 * 13 12 11 42 42 H 1.08996 * 109.45098 * 58.64575 * 13 12 11 43 43 H 1.09003 * 109.49777 * 301.40857 * 14 13 12 44 44 H 1.09002 * 109.49550 * 181.31495 * 14 13 12 45 45 H 1.09007 * 110.92564 * 23.46402 * 19 17 15 46 46 H 1.09002 * 110.74224 * 260.20923 * 19 17 15 47 47 H 1.09006 * 111.00310 * 206.22956 * 20 19 17 48 48 H 1.09000 * 111.00875 * 82.38106 * 20 19 17 49 49 H 1.09010 * 110.36639 * 278.17302 * 21 20 19 50 50 H 1.08996 * 110.46181 * 155.89481 * 21 20 19 51 51 H 0.96997 * 120.00082 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 2.2972 2.1759 -1.0684 5 7 2.6941 3.2791 -0.7832 6 6 2.7612 3.4622 0.5023 7 6 2.3070 2.1970 1.0995 8 6 2.1827 1.8465 2.5258 9 8 2.3988 0.7076 2.8933 10 7 1.8296 2.7885 3.4229 11 6 1.4271 4.1309 2.9806 12 6 0.0600 4.4635 3.5866 13 6 0.1256 4.2957 5.1063 14 6 0.4641 2.8425 5.4466 15 6 1.8358 2.4915 4.8619 16 1 2.6058 3.0855 5.3541 17 6 2.1198 1.0036 5.0773 18 1 1.5287 0.4069 4.3826 19 6 3.6226 0.7232 4.8671 20 6 3.9338 -0.3305 5.9627 21 6 3.0221 0.1462 7.1207 22 7 1.7948 0.6279 6.4610 23 6 0.5561 0.7067 7.0395 24 1 -0.3257 0.7770 6.4200 25 6 0.4338 0.6959 8.4222 26 7 1.5085 0.6105 9.1773 27 14 -1.2560 0.8026 9.2113 28 1 -1.1149 0.7728 10.6892 29 1 -1.9138 2.0697 8.8027 30 1 -2.0824 -0.3492 8.7691 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8901 33 1 -0.3633 0.5140 -0.8899 34 1 1.8933 -0.5138 -0.8901 35 1 1.8933 -0.5139 0.8899 36 1 3.0818 4.3535 1.0210 37 1 1.3597 4.1526 1.8929 38 1 2.1634 4.8604 3.3179 39 1 -0.6928 3.7891 3.1782 40 1 -0.2047 5.4930 3.3452 41 1 -0.8391 4.5555 5.5423 42 1 0.8957 4.9523 5.5111 43 1 -0.2925 2.1834 5.0208 44 1 0.4876 2.7184 6.5293 45 1 4.2126 1.6266 5.0222 46 1 3.8034 0.3119 3.8740 47 1 4.9841 -0.2946 6.2522 48 1 3.6551 -1.3313 5.6327 49 1 3.5002 0.9568 7.6709 50 1 2.7925 -0.6823 7.7907 51 1 1.4231 0.6033 10.1435 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025275266.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:38:20 Heat of formation + Delta-G solvation = 83.861226 kcal Electronic energy + Delta-G solvation = -33536.710760 eV Core-core repulsion = 29441.500476 eV Total energy + Delta-G solvation = -4095.210284 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -45.00716 -40.42421 -37.33376 -36.78160 -34.81579 -33.93536 -32.68529 -32.22566 -31.33297 -30.30146 -29.01097 -27.28484 -25.38077 -24.58748 -24.24539 -23.89366 -22.68740 -21.60812 -20.60974 -19.70109 -19.40445 -19.03180 -17.82228 -17.45225 -16.93974 -16.16446 -15.71089 -15.24054 -15.04241 -14.70169 -14.42308 -14.12975 -14.00008 -13.83929 -13.76832 -13.53385 -13.04711 -12.96023 -12.73837 -12.53451 -12.19868 -11.99752 -11.91166 -11.69302 -11.62215 -11.39826 -11.08264 -11.00040 -10.96548 -10.88177 -10.72317 -10.57881 -10.37484 -10.08591 -10.06648 -9.95432 -9.77332 -9.49049 -9.40867 -9.24840 -8.81425 -8.34827 -8.10637 -6.57389 -5.71534 -3.04631 1.09660 1.70687 2.71461 3.03861 3.32482 3.39505 3.45045 3.45385 4.09965 4.23313 4.51859 4.60358 4.75133 4.89521 4.98868 5.01266 5.06160 5.16796 5.24539 5.40853 5.49693 5.50645 5.60042 5.63380 5.67981 5.70356 5.73789 5.82558 5.88215 5.92390 6.01320 6.03836 6.12076 6.13410 6.23849 6.30742 6.35928 6.56001 6.65169 6.66236 6.80483 6.93185 6.98338 7.11064 7.37007 7.57198 7.61893 7.68647 7.76079 7.86287 8.04895 8.32480 8.50884 9.25574 9.87570 10.61551 11.40597 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013832 B = 0.003896 C = 0.003619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2023.834247 B = 7184.380280 C = 7735.637795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.051 4.051 3 C 0.038 3.962 4 O 0.089 5.911 5 N -0.359 5.359 6 C 0.017 3.983 7 C -0.248 4.248 8 C 0.580 3.420 9 O -0.501 6.501 10 N -0.593 5.593 11 C 0.101 3.899 12 C -0.132 4.132 13 C -0.124 4.124 14 C -0.127 4.127 15 C 0.140 3.860 16 H 0.060 0.940 17 C 0.164 3.836 18 H 0.076 0.924 19 C -0.118 4.118 20 C -0.150 4.150 21 C 0.175 3.825 22 N -0.596 5.596 23 C -0.220 4.220 24 H 0.074 0.926 25 C -0.004 4.004 26 N -0.913 5.913 27 Si 0.900 3.100 28 H -0.291 1.291 29 H -0.284 1.284 30 H -0.285 1.285 31 H 0.072 0.928 32 H 0.061 0.939 33 H 0.057 0.943 34 H 0.090 0.910 35 H 0.117 0.883 36 H 0.199 0.801 37 H 0.080 0.920 38 H 0.065 0.935 39 H 0.063 0.937 40 H 0.066 0.934 41 H 0.059 0.941 42 H 0.057 0.943 43 H 0.057 0.943 44 H 0.120 0.880 45 H 0.041 0.959 46 H 0.087 0.913 47 H 0.050 0.950 48 H 0.055 0.945 49 H 0.024 0.976 50 H 0.058 0.942 51 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.522 5.162 -17.031 17.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.089 4.089 3 C -0.026 4.026 4 O 0.028 5.972 5 N -0.065 5.065 6 C -0.165 4.165 7 C -0.256 4.256 8 C 0.368 3.632 9 O -0.378 6.378 10 N -0.326 5.326 11 C -0.023 4.023 12 C -0.170 4.170 13 C -0.162 4.162 14 C -0.164 4.164 15 C 0.037 3.963 16 H 0.078 0.922 17 C 0.057 3.943 18 H 0.093 0.907 19 C -0.156 4.156 20 C -0.189 4.189 21 C 0.050 3.950 22 N -0.321 5.321 23 C -0.349 4.349 24 H 0.092 0.908 25 C -0.201 4.201 26 N -0.559 5.559 27 Si 0.730 3.270 28 H -0.217 1.217 29 H -0.210 1.210 30 H -0.212 1.212 31 H 0.091 0.909 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.108 0.892 35 H 0.135 0.865 36 H 0.216 0.784 37 H 0.098 0.902 38 H 0.084 0.916 39 H 0.082 0.918 40 H 0.084 0.916 41 H 0.078 0.922 42 H 0.075 0.925 43 H 0.075 0.925 44 H 0.138 0.862 45 H 0.060 0.940 46 H 0.105 0.895 47 H 0.068 0.932 48 H 0.074 0.926 49 H 0.042 0.958 50 H 0.077 0.923 51 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 0.824 5.293 -17.652 18.447 hybrid contribution -0.879 0.395 1.346 1.656 sum -0.055 5.688 -16.305 17.269 Atomic orbital electron populations 1.21748 0.93077 1.03133 1.02530 1.20395 0.96948 0.85678 1.05906 1.24818 0.96674 0.96048 0.85055 1.84535 1.61385 1.17718 1.33525 1.73648 1.16390 0.98877 1.17548 1.26445 1.01434 0.99246 0.89399 1.22380 1.12393 0.94629 0.96155 1.16889 0.78387 0.85430 0.82536 1.90812 1.49235 1.20105 1.77693 1.48167 1.65419 1.11494 1.07543 1.21925 0.96559 0.84317 0.99456 1.21902 0.96611 1.01029 0.97483 1.21649 1.01340 0.99064 0.94137 1.22361 0.95569 0.93163 1.05336 1.22329 0.97617 1.00413 0.75951 0.92166 1.21674 0.94809 0.90059 0.87758 0.90716 1.22922 0.95687 0.97829 0.99158 1.23002 0.98782 0.98462 0.98617 1.21319 0.85196 0.97289 0.91194 1.44717 1.05556 1.73241 1.08603 1.18902 0.83574 1.43210 0.89193 0.90833 1.24943 0.96702 1.02101 0.96347 1.69940 1.26426 1.55608 1.03891 0.86389 0.84054 0.78072 0.78478 1.21697 1.21031 1.21171 0.90861 0.91964 0.92363 0.89170 0.86524 0.78440 0.90185 0.91642 0.91823 0.91554 0.92228 0.92466 0.92452 0.86230 0.93984 0.89511 0.93169 0.92633 0.95795 0.92326 0.93721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.89 37.16 0.37 -0.95 16 2 C -0.05 -0.49 6.35 -27.88 -0.18 -0.67 16 3 C 0.04 0.44 6.80 -34.63 -0.24 0.20 16 4 O 0.09 1.05 11.06 18.67 0.21 1.26 16 5 N -0.36 -4.41 12.01 31.80 0.38 -4.03 16 6 C 0.02 0.19 10.05 -14.73 -0.15 0.04 16 7 C -0.25 -3.18 5.61 -102.90 -0.58 -3.76 16 8 C 0.58 8.88 7.23 -12.53 -0.09 8.79 16 9 O -0.50 -8.85 8.56 5.27 0.05 -8.80 16 10 N -0.59 -8.90 2.98 -166.46 -0.50 -9.40 16 11 C 0.10 1.18 5.52 -3.69 -0.02 1.16 16 12 C -0.13 -1.58 6.08 -26.61 -0.16 -1.74 16 13 C -0.12 -1.81 5.88 -26.69 -0.16 -1.97 16 14 C -0.13 -2.35 3.80 -26.61 -0.10 -2.45 16 15 C 0.14 2.57 2.69 -67.60 -0.18 2.39 16 16 H 0.06 1.17 7.77 -51.93 -0.40 0.77 16 17 C 0.16 3.44 2.32 -66.96 -0.16 3.29 16 18 H 0.08 1.71 5.80 -52.08 -0.30 1.41 16 19 C -0.12 -2.32 5.41 -24.90 -0.13 -2.46 16 20 C -0.15 -3.07 7.08 -24.59 -0.17 -3.24 16 21 C 0.18 4.30 5.37 -2.53 -0.01 4.28 16 22 N -0.60 -14.71 3.08 -162.58 -0.50 -15.21 16 23 C -0.22 -5.75 6.72 -15.06 -0.10 -5.85 16 24 H 0.07 1.88 6.41 -52.49 -0.34 1.55 16 25 C 0.00 -0.10 5.46 -17.43 -0.10 -0.19 16 26 N -0.91 -26.07 10.75 55.49 0.60 -25.47 16 27 Si 0.90 21.34 29.55 -169.99 -5.02 16.32 16 28 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 29 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 30 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.66 8.14 -51.92 -0.42 0.24 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.09 0.66 8.14 -51.92 -0.42 0.23 16 35 H 0.12 1.31 6.86 -51.93 -0.36 0.96 16 36 H 0.20 1.70 7.23 -52.49 -0.38 1.32 16 37 H 0.08 0.82 4.54 -51.93 -0.24 0.59 16 38 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 40 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 42 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.06 1.13 7.26 -51.93 -0.38 0.75 16 44 H 0.12 2.68 5.62 -51.93 -0.29 2.39 16 45 H 0.04 0.81 7.62 -51.92 -0.40 0.41 16 46 H 0.09 1.68 5.57 -51.91 -0.29 1.39 16 47 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 48 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 49 H 0.02 0.64 7.96 -51.92 -0.41 0.22 16 50 H 0.06 1.59 7.22 -51.93 -0.38 1.22 16 51 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 379.34 15.07 5.72 5.72 Total: -1.00 -29.46 379.34 -9.17 -38.63 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: -7.94 Total: 4.10 kcal Atomic # 6 Polarization: -0.96 SS G_CDS: -2.16 Total: -3.11 kcal Atomic # 7 Polarization: -54.09 SS G_CDS: -0.02 Total: -54.11 kcal Atomic # 8 Polarization: -7.80 SS G_CDS: 0.25 Total: -7.54 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -29.46 -9.17 -38.63 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025275266.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.492 kcal (2) G-P(sol) polarization free energy of solvation -29.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.631 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds