Wall clock time and date at job start Wed Apr 1 2020 05:38:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50697 * 109.47220 * 2 1 4 4 O 1.33486 * 126.83325 * 270.10766 * 3 2 1 5 5 N 1.20661 * 113.15996 * 180.30377 * 4 3 2 6 6 C 1.30018 * 112.29778 * 359.75865 * 5 4 3 7 7 C 1.37360 * 126.82809 * 90.00725 * 3 2 1 8 8 C 1.47401 * 128.56002 * 359.97438 * 7 3 2 9 9 O 1.21610 * 120.00489 * 33.66856 * 8 7 3 10 10 N 1.34785 * 119.99748 * 213.66215 * 8 7 3 11 11 C 1.46962 * 120.65308 * 6.53186 * 10 8 7 12 12 C 1.53185 * 108.88757 * 126.46114 * 11 10 8 13 13 C 1.53040 * 109.31604 * 54.55652 * 12 11 10 14 14 C 1.53039 * 109.53461 * 298.63364 * 13 12 11 15 15 C 1.46930 * 120.62952 * 186.34143 * 10 8 7 16 16 H 1.08998 * 109.58069 * 113.68118 * 15 10 8 17 17 C 1.53000 * 109.58431 * 353.40178 * 15 10 8 18 18 H 1.08994 * 110.00115 * 315.40989 * 17 15 10 19 19 C 1.54312 * 109.77545 * 76.56812 * 17 15 10 20 20 C 1.55154 * 102.86262 * 141.88072 * 19 17 15 21 21 C 1.54902 * 101.58554 * 324.30288 * 20 19 17 22 22 N 1.47023 * 109.87674 * 194.31528 * 17 15 10 23 23 C 1.36931 * 125.65159 * 61.67839 * 22 17 15 24 24 H 1.08000 * 120.00012 * 18.46309 * 23 22 17 25 25 C 1.38813 * 120.00559 * 198.45563 * 23 22 17 26 26 N 1.31627 * 119.99696 * 0.02562 * 25 23 22 27 27 Si 1.86798 * 120.00468 * 180.02562 * 25 23 22 28 28 H 1.48500 * 109.47411 * 180.02562 * 27 25 23 29 29 H 1.48498 * 109.46722 * 300.00255 * 27 25 23 30 30 H 1.48503 * 109.47032 * 60.00070 * 27 25 23 31 31 H 1.08994 * 109.47288 * 179.97438 * 1 2 3 32 32 H 1.09008 * 109.46696 * 299.99417 * 1 2 3 33 33 H 1.09003 * 109.47139 * 59.99044 * 1 2 3 34 34 H 1.09008 * 109.46696 * 240.00583 * 2 1 3 35 35 H 1.08995 * 109.47048 * 120.00604 * 2 1 3 36 36 H 1.07995 * 127.33155 * 180.02562 * 6 5 4 37 37 H 1.09003 * 109.59565 * 6.59802 * 11 10 8 38 38 H 1.09000 * 109.46438 * 246.24177 * 11 10 8 39 39 H 1.09003 * 109.50186 * 294.60126 * 12 11 10 40 40 H 1.09002 * 109.52350 * 174.52698 * 12 11 10 41 41 H 1.09000 * 109.46193 * 178.61698 * 13 12 11 42 42 H 1.08996 * 109.45098 * 58.64575 * 13 12 11 43 43 H 1.09003 * 109.49777 * 301.40857 * 14 13 12 44 44 H 1.09002 * 109.49550 * 181.31495 * 14 13 12 45 45 H 1.09007 * 110.92564 * 23.46402 * 19 17 15 46 46 H 1.09002 * 110.74224 * 260.20923 * 19 17 15 47 47 H 1.09006 * 111.00310 * 206.22956 * 20 19 17 48 48 H 1.09000 * 111.00875 * 82.38106 * 20 19 17 49 49 H 1.09010 * 110.36639 * 278.17302 * 21 20 19 50 50 H 1.08996 * 110.46181 * 155.89481 * 21 20 19 51 51 H 0.96997 * 120.00082 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 2.2972 2.1759 -1.0684 5 7 2.6941 3.2791 -0.7832 6 6 2.7612 3.4622 0.5023 7 6 2.3070 2.1970 1.0995 8 6 2.1827 1.8465 2.5258 9 8 2.3988 0.7076 2.8933 10 7 1.8296 2.7885 3.4229 11 6 1.4271 4.1309 2.9806 12 6 0.0600 4.4635 3.5866 13 6 0.1256 4.2957 5.1063 14 6 0.4641 2.8425 5.4466 15 6 1.8358 2.4915 4.8619 16 1 2.6058 3.0855 5.3541 17 6 2.1198 1.0036 5.0773 18 1 1.5287 0.4069 4.3826 19 6 3.6226 0.7232 4.8671 20 6 3.9338 -0.3305 5.9627 21 6 3.0221 0.1462 7.1207 22 7 1.7948 0.6279 6.4610 23 6 0.5561 0.7067 7.0395 24 1 -0.3257 0.7770 6.4200 25 6 0.4338 0.6959 8.4222 26 7 1.5085 0.6105 9.1773 27 14 -1.2560 0.8026 9.2113 28 1 -1.1149 0.7728 10.6892 29 1 -1.9138 2.0697 8.8027 30 1 -2.0824 -0.3492 8.7691 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8901 33 1 -0.3633 0.5140 -0.8899 34 1 1.8933 -0.5138 -0.8901 35 1 1.8933 -0.5139 0.8899 36 1 3.0818 4.3535 1.0210 37 1 1.3597 4.1526 1.8929 38 1 2.1634 4.8604 3.3179 39 1 -0.6928 3.7891 3.1782 40 1 -0.2047 5.4930 3.3452 41 1 -0.8391 4.5555 5.5423 42 1 0.8957 4.9523 5.5111 43 1 -0.2925 2.1834 5.0208 44 1 0.4876 2.7184 6.5293 45 1 4.2126 1.6266 5.0222 46 1 3.8034 0.3119 3.8740 47 1 4.9841 -0.2946 6.2522 48 1 3.6551 -1.3313 5.6327 49 1 3.5002 0.9568 7.6709 50 1 2.7925 -0.6823 7.7907 51 1 1.4231 0.6033 10.1435 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025275266.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:38:19 Heat of formation + Delta-G solvation = 68.011838 kcal Electronic energy + Delta-G solvation = -33537.398041 eV Core-core repulsion = 29441.500476 eV Total energy + Delta-G solvation = -4095.897565 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -45.91740 -41.75538 -38.86005 -38.16876 -35.69423 -34.93903 -34.50791 -33.55236 -32.70870 -31.30680 -30.80696 -28.77692 -26.73318 -26.41438 -25.19352 -24.89359 -23.94173 -22.72441 -22.08988 -21.28471 -20.98332 -20.18721 -18.94324 -18.72021 -18.20766 -17.45454 -17.00878 -16.88634 -16.42620 -15.95994 -15.64573 -15.56059 -15.38836 -15.04523 -14.81783 -14.52717 -14.39332 -14.15990 -13.98264 -13.89687 -13.62507 -13.55415 -13.37734 -13.06600 -12.86316 -12.71244 -12.63200 -12.47394 -12.36605 -12.20668 -12.01691 -11.91716 -11.89031 -11.69719 -11.56899 -11.40042 -11.27981 -11.11520 -10.90090 -10.52580 -10.40413 -10.12475 -9.41054 -8.57185 -7.78846 -5.13607 0.13979 0.79998 1.46852 1.48066 1.54334 1.73334 1.91387 2.19704 2.54503 3.20392 3.35584 3.38502 3.62830 3.77461 3.85804 3.93298 4.03761 4.07456 4.14036 4.19819 4.25271 4.26636 4.34771 4.38474 4.43639 4.50075 4.57283 4.66331 4.74471 4.79187 4.84254 4.88407 4.96310 4.97553 5.02532 5.06605 5.09754 5.11840 5.20427 5.28306 5.32308 5.36009 5.43837 5.57126 5.57750 5.68486 5.77234 5.81317 5.94168 6.30733 6.52106 7.14130 7.16916 7.26803 7.87563 8.58924 9.32976 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013832 B = 0.003896 C = 0.003619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2023.834247 B = 7184.380280 C = 7735.637795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.052 4.052 3 C 0.051 3.949 4 O 0.087 5.913 5 N -0.372 5.372 6 C 0.032 3.968 7 C -0.270 4.270 8 C 0.581 3.419 9 O -0.532 6.532 10 N -0.593 5.593 11 C 0.097 3.903 12 C -0.125 4.125 13 C -0.119 4.119 14 C -0.119 4.119 15 C 0.153 3.847 16 H 0.051 0.949 17 C 0.163 3.837 18 H 0.060 0.940 19 C -0.105 4.105 20 C -0.138 4.138 21 C 0.182 3.818 22 N -0.613 5.613 23 C -0.211 4.211 24 H 0.074 0.926 25 C -0.058 4.058 26 N -0.947 5.947 27 Si 0.958 3.042 28 H -0.298 1.298 29 H -0.273 1.273 30 H -0.283 1.283 31 H 0.085 0.915 32 H 0.039 0.961 33 H 0.071 0.929 34 H 0.118 0.882 35 H 0.099 0.901 36 H 0.226 0.774 37 H 0.101 0.899 38 H 0.087 0.913 39 H 0.055 0.945 40 H 0.101 0.899 41 H 0.062 0.938 42 H 0.063 0.937 43 H 0.039 0.961 44 H 0.077 0.923 45 H 0.047 0.953 46 H 0.097 0.903 47 H 0.074 0.926 48 H 0.056 0.944 49 H -0.003 1.003 50 H 0.023 0.977 51 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.280 6.906 -19.973 21.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.090 4.090 3 C -0.013 4.013 4 O 0.029 5.971 5 N -0.079 5.079 6 C -0.150 4.150 7 C -0.277 4.277 8 C 0.370 3.630 9 O -0.412 6.412 10 N -0.325 5.325 11 C -0.024 4.024 12 C -0.163 4.163 13 C -0.157 4.157 14 C -0.157 4.157 15 C 0.048 3.952 16 H 0.069 0.931 17 C 0.058 3.942 18 H 0.077 0.923 19 C -0.143 4.143 20 C -0.177 4.177 21 C 0.057 3.943 22 N -0.338 5.338 23 C -0.340 4.340 24 H 0.092 0.908 25 C -0.252 4.252 26 N -0.595 5.595 27 Si 0.787 3.213 28 H -0.224 1.224 29 H -0.198 1.198 30 H -0.209 1.209 31 H 0.104 0.896 32 H 0.058 0.942 33 H 0.090 0.910 34 H 0.136 0.864 35 H 0.117 0.883 36 H 0.243 0.757 37 H 0.119 0.881 38 H 0.106 0.894 39 H 0.074 0.926 40 H 0.119 0.881 41 H 0.081 0.919 42 H 0.082 0.918 43 H 0.057 0.943 44 H 0.095 0.905 45 H 0.066 0.934 46 H 0.115 0.885 47 H 0.092 0.908 48 H 0.074 0.926 49 H 0.015 0.985 50 H 0.042 0.958 51 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 0.563 7.059 -20.664 21.844 hybrid contribution -0.812 -0.174 2.149 2.304 sum -0.249 6.885 -18.515 19.755 Atomic orbital electron populations 1.21720 0.92449 1.03871 1.02004 1.20477 0.97353 0.84766 1.06380 1.25131 0.95015 0.96396 0.84777 1.84546 1.61455 1.17742 1.33339 1.73654 1.17179 0.99109 1.17992 1.26808 1.00017 0.99273 0.88917 1.22103 1.14671 0.96145 0.94784 1.17153 0.77452 0.84884 0.83508 1.90772 1.50625 1.21313 1.78449 1.48073 1.65472 1.13119 1.05874 1.22215 0.96911 0.82606 1.00709 1.21871 0.96616 1.02971 0.94848 1.21585 1.01648 0.95846 0.96627 1.22078 0.95292 0.95978 1.02331 1.21765 0.97056 0.98046 0.78310 0.93085 1.21684 0.95611 0.91767 0.85160 0.92311 1.22842 0.94531 0.97682 0.99201 1.22894 0.99145 0.98599 0.97021 1.21085 0.86020 0.95153 0.92044 1.44965 1.05196 1.73790 1.09887 1.19093 0.84339 1.41266 0.89331 0.90845 1.25589 0.99697 1.03005 0.96896 1.70131 1.28177 1.57840 1.03388 0.85450 0.80486 0.78357 0.76969 1.22437 1.19847 1.20905 0.89597 0.94218 0.91026 0.86404 0.88296 0.75741 0.88116 0.89437 0.92634 0.88058 0.91905 0.91781 0.94267 0.90514 0.93441 0.88522 0.90775 0.92565 0.98452 0.95842 0.94616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.31 9.89 71.98 0.71 -1.60 16 2 C -0.05 -0.90 6.35 29.85 0.19 -0.71 16 3 C 0.05 1.07 6.80 25.48 0.17 1.24 16 4 O 0.09 1.83 11.06 77.05 0.85 2.68 16 5 N -0.37 -8.00 12.01 -54.20 -0.65 -8.65 16 6 C 0.03 0.61 10.05 87.29 0.88 1.49 16 7 C -0.27 -6.29 5.61 -18.75 -0.11 -6.40 16 8 C 0.58 17.00 7.23 86.65 0.63 17.62 16 9 O -0.53 -18.60 8.56 -4.06 -0.03 -18.63 16 10 N -0.59 -16.85 2.98 -798.81 -2.38 -19.23 16 11 C 0.10 1.94 5.52 86.35 0.48 2.42 16 12 C -0.13 -2.58 6.08 30.67 0.19 -2.40 16 13 C -0.12 -3.29 5.88 30.62 0.18 -3.11 16 14 C -0.12 -4.46 3.80 30.67 0.12 -4.34 16 15 C 0.15 5.59 2.69 44.97 0.12 5.72 16 16 H 0.05 1.98 7.77 -2.39 -0.02 1.96 16 17 C 0.16 7.00 2.32 45.34 0.11 7.10 16 18 H 0.06 2.76 5.80 -13.23 -0.08 2.69 16 19 C -0.11 -4.09 5.41 31.78 0.17 -3.92 16 20 C -0.14 -5.68 7.08 31.98 0.23 -5.45 16 21 C 0.18 9.37 5.37 86.85 0.47 9.83 16 22 N -0.61 -31.46 3.08 -668.29 -2.06 -33.52 16 23 C -0.21 -11.45 6.72 84.03 0.56 -10.89 16 24 H 0.07 3.91 6.41 -2.91 -0.02 3.89 16 25 C -0.06 -3.27 5.46 84.86 0.46 -2.81 16 26 N -0.95 -56.76 10.75 21.65 0.23 -56.53 16 27 Si 0.96 45.28 29.55 68.60 2.03 47.31 16 28 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 29 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 30 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 31 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.04 0.81 8.14 -2.38 -0.02 0.79 16 33 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.12 1.40 8.14 -2.38 -0.02 1.38 16 35 H 0.10 2.16 6.86 -2.39 -0.02 2.14 16 36 H 0.23 2.83 7.23 -2.91 -0.02 2.81 16 37 H 0.10 1.65 4.54 -2.39 -0.01 1.63 16 38 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.10 1.48 8.14 -2.39 -0.02 1.47 16 41 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 42 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 43 H 0.04 1.57 7.26 -2.39 -0.02 1.56 16 44 H 0.08 3.57 5.62 -2.39 -0.01 3.56 16 45 H 0.05 1.78 7.62 -2.38 -0.02 1.76 16 46 H 0.10 3.65 5.57 -10.69 -0.06 3.59 16 47 H 0.07 2.68 8.14 -2.38 -0.02 2.66 16 48 H 0.06 2.29 8.14 -2.39 -0.02 2.28 16 49 H 0.00 -0.14 7.96 -2.38 -0.02 -0.16 16 50 H 0.02 1.34 7.22 -2.39 -0.02 1.32 16 51 H 0.24 14.41 8.31 -92.71 -0.77 13.64 16 Total: -1.00 -67.63 379.34 4.37 -63.27 By element: Atomic # 1 Polarization: 18.68 SS G_CDS: 0.83 Total: 19.51 kcal Atomic # 6 Polarization: -1.77 SS G_CDS: 5.55 Total: 3.79 kcal Atomic # 7 Polarization: -113.06 SS G_CDS: -4.86 Total: -117.92 kcal Atomic # 8 Polarization: -16.77 SS G_CDS: 0.82 Total: -15.95 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Total: -67.63 4.37 -63.27 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025275266.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.279 kcal (2) G-P(sol) polarization free energy of solvation -67.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.267 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds