Wall clock time and date at job start Wed Apr 1 2020 05:38:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50702 * 109.46881 * 2 1 4 4 O 1.33492 * 126.83256 * 270.04416 * 3 2 1 5 5 N 1.20662 * 113.15447 * 179.70439 * 4 3 2 6 6 C 1.30015 * 112.30212 * 0.44221 * 5 4 3 7 7 C 1.37361 * 126.82605 * 90.00586 * 3 2 1 8 8 C 1.47401 * 128.56517 * 0.03185 * 7 3 2 9 9 O 1.21605 * 120.00289 * 37.81445 * 8 7 3 10 10 N 1.34780 * 119.99929 * 217.81761 * 8 7 3 11 11 C 1.46923 * 120.63393 * 5.05114 * 10 8 7 12 12 C 1.53625 * 108.54550 * 126.36548 * 11 10 8 13 13 C 1.53045 * 109.23657 * 54.85962 * 12 11 10 14 14 C 1.53040 * 109.53885 * 298.50909 * 13 12 11 15 15 C 1.46925 * 120.62785 * 185.33213 * 10 8 7 16 16 H 1.08998 * 109.59011 * 113.65369 * 15 10 8 17 17 C 1.52999 * 109.58898 * 353.37030 * 15 10 8 18 18 H 1.09000 * 109.87364 * 56.52111 * 17 15 10 19 19 C 1.54327 * 109.88459 * 295.34669 * 17 15 10 20 20 C 1.55151 * 102.94091 * 218.38769 * 19 17 15 21 21 C 1.54908 * 101.58615 * 35.50269 * 20 19 17 22 22 N 1.47019 * 109.88251 * 177.53908 * 17 15 10 23 23 C 1.36936 * 125.64830 * 298.38880 * 22 17 15 24 24 H 1.08003 * 120.00198 * 344.04942 * 23 22 17 25 25 C 1.38816 * 120.00087 * 164.04250 * 23 22 17 26 26 N 1.31625 * 119.99704 * 0.02562 * 25 23 22 27 27 Si 1.86800 * 120.00212 * 180.02562 * 25 23 22 28 28 H 1.48503 * 109.47223 * 90.00148 * 27 25 23 29 29 H 1.48495 * 109.47185 * 210.00027 * 27 25 23 30 30 H 1.48496 * 109.46892 * 329.99852 * 27 25 23 31 31 H 1.08996 * 109.47983 * 60.00049 * 1 2 3 32 32 H 1.09005 * 109.47236 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47147 * 299.99277 * 1 2 3 34 34 H 1.08999 * 109.47147 * 240.00723 * 2 1 3 35 35 H 1.08997 * 109.47549 * 120.00591 * 2 1 3 36 36 H 1.08004 * 127.33000 * 179.85832 * 6 5 4 37 37 H 1.08998 * 109.58538 * 246.20587 * 11 10 8 38 38 H 1.09007 * 109.58216 * 6.62677 * 11 10 8 39 39 H 1.09001 * 109.63631 * 294.87300 * 12 11 10 40 40 H 1.08996 * 109.45815 * 174.73951 * 12 11 10 41 41 H 1.08999 * 109.45659 * 178.49208 * 13 12 11 42 42 H 1.08998 * 109.45178 * 58.52324 * 13 12 11 43 43 H 1.09000 * 109.49714 * 301.41793 * 14 13 12 44 44 H 1.09001 * 109.52588 * 181.33539 * 14 13 12 45 45 H 1.08997 * 110.71696 * 336.75271 * 19 17 15 46 46 H 1.09000 * 110.71706 * 100.02572 * 19 17 15 47 47 H 1.09004 * 111.00618 * 277.42258 * 20 19 17 48 48 H 1.09001 * 111.00217 * 153.57705 * 20 19 17 49 49 H 1.08997 * 110.36574 * 204.14873 * 21 20 19 50 50 H 1.08995 * 110.36477 * 81.82526 * 21 20 19 51 51 H 0.97000 * 119.99739 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 8 2.2982 2.1756 -1.0685 5 7 2.6837 3.2828 -0.7831 6 6 2.7539 3.4648 0.5023 7 6 2.3067 2.1971 1.0995 8 6 2.1836 1.8463 2.5259 9 8 2.4735 0.7275 2.9042 10 7 1.7495 2.7655 3.4109 11 6 1.2908 4.0850 2.9555 12 6 -0.1171 4.3336 3.5176 13 6 -0.0891 4.1688 5.0389 14 6 0.3241 2.7380 5.3912 15 6 1.7317 2.4693 4.8498 16 1 2.4509 3.1074 5.3632 17 6 2.0964 1.0007 5.0758 18 1 3.0661 0.7863 4.6265 19 6 1.0149 0.0901 4.4570 20 6 0.9010 -1.0639 5.4878 21 6 1.1215 -0.3109 6.8235 22 7 2.1381 0.7118 6.5167 23 6 2.9812 1.2962 7.4238 24 1 3.8529 1.8345 7.0820 25 6 2.7154 1.1970 8.7826 26 7 1.6532 0.5406 9.1992 27 14 3.8651 1.9948 10.0200 28 1 3.4172 3.3853 10.2869 29 1 3.8470 1.2176 11.2852 30 1 5.2449 2.0158 9.4716 31 1 -0.3635 0.5138 -0.8899 32 1 -0.3634 -1.0277 -0.0005 33 1 -0.3633 0.5137 0.8900 34 1 1.8933 -0.5137 -0.8900 35 1 1.8933 -0.5139 0.8899 36 1 3.0688 4.3583 1.0210 37 1 1.9730 4.8540 3.3179 38 1 1.2597 4.1050 1.8661 39 1 -0.8155 3.6160 3.0868 40 1 -0.4346 5.3457 3.2671 41 1 -1.0806 4.3707 5.4443 42 1 0.6278 4.8696 5.4667 43 1 -0.3784 2.0355 4.9427 44 1 0.3210 2.6141 6.4742 45 1 0.0679 0.6222 4.3675 46 1 1.3385 -0.2892 3.4877 47 1 1.6792 -1.8100 5.3268 48 1 -0.0883 -1.5204 5.4554 49 1 1.4899 -0.9947 7.5881 50 1 0.1950 0.1613 7.1501 51 1 1.4673 0.4715 10.1487 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025275267.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:38:23 Heat of formation + Delta-G solvation = 89.257630 kcal Electronic energy + Delta-G solvation = -33598.463746 eV Core-core repulsion = 29503.487467 eV Total energy + Delta-G solvation = -4094.976279 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -45.00940 -40.56176 -37.37653 -36.76165 -34.84727 -33.95012 -32.50052 -32.44140 -31.14086 -30.29913 -29.15710 -27.28265 -25.37552 -24.45180 -24.28798 -23.92750 -22.93286 -21.66558 -20.83211 -20.00794 -19.52064 -18.46866 -17.84556 -17.40816 -16.91253 -16.26515 -15.66038 -15.27727 -15.03606 -14.72271 -14.56101 -14.30301 -14.09767 -13.80155 -13.77812 -13.56962 -13.32835 -13.01234 -12.88725 -12.77345 -12.05472 -11.98457 -11.82439 -11.73509 -11.50846 -11.30903 -11.20636 -11.06075 -10.96279 -10.83744 -10.73902 -10.53613 -10.39525 -10.23124 -10.10432 -10.01806 -9.69005 -9.60746 -9.49088 -9.22534 -8.73268 -8.49479 -8.00628 -6.62746 -5.68459 -3.02763 1.10281 1.71282 2.70696 2.99098 3.29283 3.40730 3.47352 3.48457 4.09638 4.22536 4.54758 4.59302 4.73491 4.84508 4.95029 4.97875 4.98837 5.12986 5.18514 5.40190 5.46317 5.49084 5.52118 5.55903 5.63386 5.67838 5.69045 5.80995 5.82463 5.90257 5.96731 5.98086 6.04961 6.10071 6.13136 6.21108 6.37655 6.47651 6.54437 6.65236 6.75555 6.88321 6.97135 7.06823 7.14828 7.48772 7.63976 7.67279 7.75166 7.88947 8.04719 8.34031 8.51909 9.28417 9.90647 10.62266 11.43431 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014611 B = 0.003775 C = 0.003514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1915.840350 B = 7416.199956 C = 7966.749821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.051 4.051 3 C 0.033 3.967 4 O 0.089 5.911 5 N -0.359 5.359 6 C 0.017 3.983 7 C -0.244 4.244 8 C 0.571 3.429 9 O -0.494 6.494 10 N -0.592 5.592 11 C 0.101 3.899 12 C -0.131 4.131 13 C -0.121 4.121 14 C -0.123 4.123 15 C 0.138 3.862 16 H 0.072 0.928 17 C 0.171 3.829 18 H 0.064 0.936 19 C -0.125 4.125 20 C -0.153 4.153 21 C 0.176 3.824 22 N -0.594 5.594 23 C -0.225 4.225 24 H 0.070 0.930 25 C -0.003 4.003 26 N -0.916 5.916 27 Si 0.903 3.097 28 H -0.290 1.290 29 H -0.292 1.292 30 H -0.282 1.282 31 H 0.058 0.942 32 H 0.072 0.928 33 H 0.061 0.939 34 H 0.090 0.910 35 H 0.114 0.886 36 H 0.199 0.801 37 H 0.067 0.933 38 H 0.080 0.920 39 H 0.063 0.937 40 H 0.067 0.933 41 H 0.059 0.941 42 H 0.061 0.939 43 H 0.063 0.937 44 H 0.091 0.909 45 H 0.051 0.949 46 H 0.098 0.902 47 H 0.054 0.946 48 H 0.049 0.951 49 H 0.062 0.938 50 H 0.022 0.978 51 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.767 4.195 -18.242 19.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.089 4.089 3 C -0.031 4.031 4 O 0.029 5.971 5 N -0.064 5.064 6 C -0.165 4.165 7 C -0.251 4.251 8 C 0.359 3.641 9 O -0.371 6.371 10 N -0.325 5.325 11 C -0.022 4.022 12 C -0.169 4.169 13 C -0.158 4.158 14 C -0.161 4.161 15 C 0.035 3.965 16 H 0.090 0.910 17 C 0.064 3.936 18 H 0.081 0.919 19 C -0.162 4.162 20 C -0.192 4.192 21 C 0.051 3.949 22 N -0.319 5.319 23 C -0.354 4.354 24 H 0.088 0.912 25 C -0.200 4.200 26 N -0.562 5.562 27 Si 0.734 3.266 28 H -0.217 1.217 29 H -0.218 1.218 30 H -0.207 1.207 31 H 0.077 0.923 32 H 0.091 0.909 33 H 0.080 0.920 34 H 0.109 0.891 35 H 0.133 0.867 36 H 0.215 0.785 37 H 0.085 0.915 38 H 0.099 0.901 39 H 0.082 0.918 40 H 0.086 0.914 41 H 0.078 0.922 42 H 0.079 0.921 43 H 0.082 0.918 44 H 0.109 0.891 45 H 0.069 0.931 46 H 0.115 0.885 47 H 0.073 0.927 48 H 0.067 0.933 49 H 0.081 0.919 50 H 0.040 0.960 51 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -4.326 4.355 -18.850 19.824 hybrid contribution 0.474 0.707 1.642 1.849 sum -3.853 5.062 -17.207 18.345 Atomic orbital electron populations 1.21755 0.93089 1.03114 1.02556 1.20372 0.96887 0.85767 1.05880 1.24774 0.97130 0.96130 0.85051 1.84533 1.61693 1.17430 1.33494 1.73643 1.16524 0.98689 1.17524 1.26408 1.01535 0.99186 0.89374 1.22345 1.12062 0.94657 0.96049 1.16876 0.79974 0.84619 0.82583 1.90817 1.48447 1.20386 1.77460 1.48053 1.62925 1.13828 1.07727 1.21988 0.95752 0.85006 0.99482 1.21962 0.96349 1.01389 0.97184 1.21558 1.01313 0.98450 0.94506 1.21930 0.96208 0.94727 1.03193 1.22201 0.97034 1.01252 0.76058 0.90956 1.21498 0.98035 0.88826 0.85255 0.91876 1.23306 0.97153 0.96595 0.99164 1.23045 0.99150 0.97794 0.99192 1.21335 0.91680 0.90046 0.91795 1.44682 1.40756 1.44227 1.02251 1.18946 1.02022 1.28073 0.86330 0.91179 1.24873 0.97421 1.00633 0.97028 1.69953 1.27282 1.45334 1.13667 0.86252 0.80227 0.78882 0.81235 1.21690 1.21787 1.20736 0.92302 0.90860 0.92002 0.89111 0.86735 0.78467 0.91453 0.90150 0.91799 0.91391 0.92231 0.92073 0.91848 0.89081 0.93106 0.88495 0.92743 0.93262 0.91948 0.96022 0.93862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.89 37.15 0.37 -0.83 16 2 C -0.05 -0.46 6.36 -27.89 -0.18 -0.64 16 3 C 0.03 0.37 6.80 -34.63 -0.24 0.13 16 4 O 0.09 1.04 11.06 18.65 0.21 1.25 16 5 N -0.36 -4.37 12.01 31.81 0.38 -3.99 16 6 C 0.02 0.19 10.07 -14.73 -0.15 0.04 16 7 C -0.24 -3.07 5.51 -102.89 -0.57 -3.64 16 8 C 0.57 8.59 7.09 -12.53 -0.09 8.50 16 9 O -0.49 -8.64 8.48 5.27 0.04 -8.60 16 10 N -0.59 -8.67 2.93 -166.22 -0.49 -9.15 16 11 C 0.10 1.14 5.67 -3.49 -0.02 1.12 16 12 C -0.13 -1.44 6.10 -26.38 -0.16 -1.60 16 13 C -0.12 -1.63 5.88 -26.69 -0.16 -1.79 16 14 C -0.12 -2.12 4.96 -26.61 -0.13 -2.25 16 15 C 0.14 2.50 2.68 -67.60 -0.18 2.32 16 16 H 0.07 1.45 7.91 -51.93 -0.41 1.04 16 17 C 0.17 3.59 2.29 -66.95 -0.15 3.44 16 18 H 0.06 1.48 6.17 -51.93 -0.32 1.16 16 19 C -0.13 -2.35 4.95 -24.90 -0.12 -2.48 16 20 C -0.15 -3.08 7.08 -24.59 -0.17 -3.25 16 21 C 0.18 4.31 5.39 -2.53 -0.01 4.29 16 22 N -0.59 -14.80 2.64 -162.57 -0.43 -15.23 16 23 C -0.22 -6.11 9.75 -15.06 -0.15 -6.26 16 24 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 25 C 0.00 -0.07 5.47 -17.43 -0.10 -0.17 16 26 N -0.92 -26.43 10.63 55.49 0.59 -25.84 16 27 Si 0.90 21.89 29.55 -169.99 -5.02 16.87 16 28 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 29 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 30 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.11 1.22 6.98 -51.93 -0.36 0.85 16 36 H 0.20 1.70 7.46 -52.48 -0.39 1.31 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.08 0.80 4.63 -51.92 -0.24 0.55 16 39 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 43 H 0.06 1.10 5.65 -51.93 -0.29 0.81 16 44 H 0.09 1.94 7.89 -51.93 -0.41 1.53 16 45 H 0.05 0.93 5.37 -51.93 -0.28 0.65 16 46 H 0.10 1.77 5.20 -55.82 -0.29 1.48 16 47 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 48 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 49 H 0.06 1.71 7.03 -51.93 -0.36 1.34 16 50 H 0.02 0.57 8.03 -51.93 -0.42 0.15 16 51 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 382.61 15.07 5.77 5.77 Total: -1.00 -30.30 382.61 -9.14 -39.43 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: -7.98 Total: 2.55 kcal Atomic # 6 Polarization: -0.85 SS G_CDS: -2.21 Total: -3.06 kcal Atomic # 7 Polarization: -54.27 SS G_CDS: 0.05 Total: -54.21 kcal Atomic # 8 Polarization: -7.60 SS G_CDS: 0.25 Total: -7.35 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -30.30 -9.14 -39.43 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025275267.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.689 kcal (2) G-P(sol) polarization free energy of solvation -30.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.431 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds