Wall clock time and date at job start Wed Apr 1 2020 05:38:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50702 * 109.46881 * 2 1 4 4 O 1.33492 * 126.83256 * 270.04416 * 3 2 1 5 5 N 1.20662 * 113.15447 * 179.70439 * 4 3 2 6 6 C 1.30015 * 112.30212 * 0.44221 * 5 4 3 7 7 C 1.37361 * 126.82605 * 90.00586 * 3 2 1 8 8 C 1.47401 * 128.56517 * 0.03185 * 7 3 2 9 9 O 1.21605 * 120.00289 * 37.81445 * 8 7 3 10 10 N 1.34780 * 119.99929 * 217.81761 * 8 7 3 11 11 C 1.46923 * 120.63393 * 5.05114 * 10 8 7 12 12 C 1.53625 * 108.54550 * 126.36548 * 11 10 8 13 13 C 1.53045 * 109.23657 * 54.85962 * 12 11 10 14 14 C 1.53040 * 109.53885 * 298.50909 * 13 12 11 15 15 C 1.46925 * 120.62785 * 185.33213 * 10 8 7 16 16 H 1.08998 * 109.59011 * 113.65369 * 15 10 8 17 17 C 1.52999 * 109.58898 * 353.37030 * 15 10 8 18 18 H 1.09000 * 109.87364 * 56.52111 * 17 15 10 19 19 C 1.54327 * 109.88459 * 295.34669 * 17 15 10 20 20 C 1.55151 * 102.94091 * 218.38769 * 19 17 15 21 21 C 1.54908 * 101.58615 * 35.50269 * 20 19 17 22 22 N 1.47019 * 109.88251 * 177.53908 * 17 15 10 23 23 C 1.36936 * 125.64830 * 298.38880 * 22 17 15 24 24 H 1.08003 * 120.00198 * 344.04942 * 23 22 17 25 25 C 1.38816 * 120.00087 * 164.04250 * 23 22 17 26 26 N 1.31625 * 119.99704 * 0.02562 * 25 23 22 27 27 Si 1.86800 * 120.00212 * 180.02562 * 25 23 22 28 28 H 1.48503 * 109.47223 * 90.00148 * 27 25 23 29 29 H 1.48495 * 109.47185 * 210.00027 * 27 25 23 30 30 H 1.48496 * 109.46892 * 329.99852 * 27 25 23 31 31 H 1.08996 * 109.47983 * 60.00049 * 1 2 3 32 32 H 1.09005 * 109.47236 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47147 * 299.99277 * 1 2 3 34 34 H 1.08999 * 109.47147 * 240.00723 * 2 1 3 35 35 H 1.08997 * 109.47549 * 120.00591 * 2 1 3 36 36 H 1.08004 * 127.33000 * 179.85832 * 6 5 4 37 37 H 1.08998 * 109.58538 * 246.20587 * 11 10 8 38 38 H 1.09007 * 109.58216 * 6.62677 * 11 10 8 39 39 H 1.09001 * 109.63631 * 294.87300 * 12 11 10 40 40 H 1.08996 * 109.45815 * 174.73951 * 12 11 10 41 41 H 1.08999 * 109.45659 * 178.49208 * 13 12 11 42 42 H 1.08998 * 109.45178 * 58.52324 * 13 12 11 43 43 H 1.09000 * 109.49714 * 301.41793 * 14 13 12 44 44 H 1.09001 * 109.52588 * 181.33539 * 14 13 12 45 45 H 1.08997 * 110.71696 * 336.75271 * 19 17 15 46 46 H 1.09000 * 110.71706 * 100.02572 * 19 17 15 47 47 H 1.09004 * 111.00618 * 277.42258 * 20 19 17 48 48 H 1.09001 * 111.00217 * 153.57705 * 20 19 17 49 49 H 1.08997 * 110.36574 * 204.14873 * 21 20 19 50 50 H 1.08995 * 110.36477 * 81.82526 * 21 20 19 51 51 H 0.97000 * 119.99739 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 8 2.2982 2.1756 -1.0685 5 7 2.6837 3.2828 -0.7831 6 6 2.7539 3.4648 0.5023 7 6 2.3067 2.1971 1.0995 8 6 2.1836 1.8463 2.5259 9 8 2.4735 0.7275 2.9042 10 7 1.7495 2.7655 3.4109 11 6 1.2908 4.0850 2.9555 12 6 -0.1171 4.3336 3.5176 13 6 -0.0891 4.1688 5.0389 14 6 0.3241 2.7380 5.3912 15 6 1.7317 2.4693 4.8498 16 1 2.4509 3.1074 5.3632 17 6 2.0964 1.0007 5.0758 18 1 3.0661 0.7863 4.6265 19 6 1.0149 0.0901 4.4570 20 6 0.9010 -1.0639 5.4878 21 6 1.1215 -0.3109 6.8235 22 7 2.1381 0.7118 6.5167 23 6 2.9812 1.2962 7.4238 24 1 3.8529 1.8345 7.0820 25 6 2.7154 1.1970 8.7826 26 7 1.6532 0.5406 9.1992 27 14 3.8651 1.9948 10.0200 28 1 3.4172 3.3853 10.2869 29 1 3.8470 1.2176 11.2852 30 1 5.2449 2.0158 9.4716 31 1 -0.3635 0.5138 -0.8899 32 1 -0.3634 -1.0277 -0.0005 33 1 -0.3633 0.5137 0.8900 34 1 1.8933 -0.5137 -0.8900 35 1 1.8933 -0.5139 0.8899 36 1 3.0688 4.3583 1.0210 37 1 1.9730 4.8540 3.3179 38 1 1.2597 4.1050 1.8661 39 1 -0.8155 3.6160 3.0868 40 1 -0.4346 5.3457 3.2671 41 1 -1.0806 4.3707 5.4443 42 1 0.6278 4.8696 5.4667 43 1 -0.3784 2.0355 4.9427 44 1 0.3210 2.6141 6.4742 45 1 0.0679 0.6222 4.3675 46 1 1.3385 -0.2892 3.4877 47 1 1.6792 -1.8100 5.3268 48 1 -0.0883 -1.5204 5.4554 49 1 1.4899 -0.9947 7.5881 50 1 0.1950 0.1613 7.1501 51 1 1.4673 0.4715 10.1487 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025275267.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:38:22 Heat of formation + Delta-G solvation = 72.883749 kcal Electronic energy + Delta-G solvation = -33599.173770 eV Core-core repulsion = 29503.487467 eV Total energy + Delta-G solvation = -4095.686303 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -45.91022 -41.88143 -38.85081 -38.14320 -35.68437 -34.99349 -34.36763 -33.63479 -32.49673 -31.26350 -30.99692 -28.74270 -26.69514 -26.33688 -25.21048 -24.88436 -24.18965 -22.72008 -22.24059 -21.56597 -20.91899 -19.69233 -19.02422 -18.70569 -18.15168 -17.47295 -17.12456 -16.72710 -16.42669 -16.25141 -15.73629 -15.53015 -15.36682 -15.09914 -14.85619 -14.62343 -14.41419 -14.39147 -14.18134 -13.88063 -13.54952 -13.49115 -13.02489 -12.96857 -12.76974 -12.71902 -12.69986 -12.54842 -12.43718 -12.08551 -11.97420 -11.93542 -11.85939 -11.71202 -11.61076 -11.39557 -11.29234 -11.14732 -11.00318 -10.65384 -10.39353 -10.06262 -9.34453 -8.66041 -7.81504 -5.17349 0.17024 0.80671 1.44963 1.45887 1.54572 1.74432 1.88269 2.17347 2.52781 3.20817 3.36649 3.37089 3.62483 3.77669 3.88300 3.93244 3.95466 4.02279 4.12915 4.21721 4.25719 4.29576 4.36917 4.39748 4.42285 4.46783 4.57517 4.64982 4.75987 4.81068 4.85015 4.87056 4.91954 5.00362 5.03149 5.07981 5.10756 5.13589 5.23505 5.28969 5.31587 5.34003 5.38740 5.50942 5.55664 5.67956 5.75716 5.80908 5.85861 6.28116 6.51464 7.14847 7.16254 7.27792 7.86619 8.56189 9.29495 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014611 B = 0.003775 C = 0.003514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1915.840350 B = 7416.199956 C = 7966.749821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.053 4.053 3 C 0.049 3.951 4 O 0.088 5.912 5 N -0.372 5.372 6 C 0.029 3.971 7 C -0.266 4.266 8 C 0.574 3.426 9 O -0.527 6.527 10 N -0.591 5.591 11 C 0.097 3.903 12 C -0.122 4.122 13 C -0.116 4.116 14 C -0.112 4.112 15 C 0.151 3.849 16 H 0.048 0.952 17 C 0.170 3.830 18 H 0.040 0.960 19 C -0.108 4.108 20 C -0.142 4.142 21 C 0.185 3.815 22 N -0.611 5.611 23 C -0.232 4.232 24 H 0.067 0.933 25 C -0.055 4.055 26 N -0.944 5.944 27 Si 0.966 3.034 28 H -0.284 1.284 29 H -0.296 1.296 30 H -0.274 1.274 31 H 0.069 0.931 32 H 0.087 0.913 33 H 0.045 0.955 34 H 0.116 0.884 35 H 0.099 0.901 36 H 0.223 0.777 37 H 0.082 0.918 38 H 0.102 0.898 39 H 0.064 0.936 40 H 0.101 0.899 41 H 0.069 0.931 42 H 0.059 0.941 43 H 0.062 0.938 44 H 0.042 0.958 45 H 0.058 0.942 46 H 0.112 0.888 47 H 0.052 0.948 48 H 0.075 0.925 49 H 0.024 0.976 50 H -0.003 1.003 51 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.249 5.728 -21.031 22.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.091 4.091 3 C -0.015 4.015 4 O 0.029 5.971 5 N -0.079 5.079 6 C -0.153 4.153 7 C -0.274 4.274 8 C 0.364 3.636 9 O -0.406 6.406 10 N -0.323 5.323 11 C -0.025 4.025 12 C -0.160 4.160 13 C -0.154 4.154 14 C -0.150 4.150 15 C 0.047 3.953 16 H 0.066 0.934 17 C 0.064 3.936 18 H 0.058 0.942 19 C -0.145 4.145 20 C -0.181 4.181 21 C 0.060 3.940 22 N -0.336 5.336 23 C -0.361 4.361 24 H 0.085 0.915 25 C -0.249 4.249 26 N -0.592 5.592 27 Si 0.795 3.205 28 H -0.211 1.211 29 H -0.222 1.222 30 H -0.199 1.199 31 H 0.088 0.912 32 H 0.106 0.894 33 H 0.064 0.936 34 H 0.134 0.866 35 H 0.117 0.883 36 H 0.239 0.761 37 H 0.100 0.900 38 H 0.120 0.880 39 H 0.082 0.918 40 H 0.120 0.880 41 H 0.087 0.913 42 H 0.078 0.922 43 H 0.080 0.920 44 H 0.061 0.939 45 H 0.077 0.923 46 H 0.129 0.871 47 H 0.071 0.929 48 H 0.093 0.907 49 H 0.042 0.958 50 H 0.015 0.985 51 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -4.812 5.914 -21.703 23.003 hybrid contribution 0.667 0.211 2.433 2.531 sum -4.146 6.125 -19.270 20.640 Atomic orbital electron populations 1.21735 0.92034 1.04033 1.02259 1.20496 0.97655 0.84558 1.06342 1.25147 0.95235 0.96530 0.84619 1.84542 1.61718 1.17430 1.33381 1.73650 1.17330 0.98997 1.17906 1.26752 1.00268 0.99285 0.88971 1.22063 1.14494 0.96116 0.94718 1.17140 0.78804 0.84136 0.83542 1.90767 1.49886 1.21754 1.78204 1.47997 1.62954 1.15402 1.05968 1.22280 0.96204 0.83229 1.00778 1.21932 0.96144 1.03417 0.94532 1.21521 1.01613 0.95315 0.96938 1.21740 0.95662 0.97688 0.99909 1.21615 0.96811 0.98486 0.78429 0.93412 1.21509 0.97841 0.91392 0.82856 0.94217 1.23218 0.96643 0.95460 0.99130 1.22949 1.00537 0.97837 0.96776 1.21083 0.90279 0.89514 0.93109 1.44881 1.40433 1.44620 1.03652 1.19184 1.02284 1.27506 0.87150 0.91495 1.25580 0.99078 1.01564 0.98648 1.70148 1.28962 1.46739 1.13378 0.85266 0.78708 0.77905 0.78618 1.21091 1.22213 1.19924 0.91197 0.89418 0.93609 0.86607 0.88284 0.76055 0.89981 0.88033 0.91761 0.88042 0.91271 0.92233 0.91976 0.93906 0.92340 0.87101 0.92907 0.90661 0.95790 0.98458 0.94517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 9.89 71.98 0.71 -1.24 16 2 C -0.05 -0.84 6.36 29.85 0.19 -0.65 16 3 C 0.05 0.98 6.80 25.48 0.17 1.16 16 4 O 0.09 1.81 11.06 76.99 0.85 2.66 16 5 N -0.37 -8.02 12.01 -54.18 -0.65 -8.67 16 6 C 0.03 0.57 10.07 87.29 0.88 1.45 16 7 C -0.27 -6.14 5.51 -18.74 -0.10 -6.25 16 8 C 0.57 16.61 7.09 86.66 0.61 17.22 16 9 O -0.53 -18.32 8.48 -4.05 -0.03 -18.35 16 10 N -0.59 -16.57 2.93 -798.06 -2.34 -18.91 16 11 C 0.10 1.89 5.67 86.51 0.49 2.38 16 12 C -0.12 -2.29 6.10 30.82 0.19 -2.10 16 13 C -0.12 -2.98 5.88 30.62 0.18 -2.80 16 14 C -0.11 -3.93 4.96 30.67 0.15 -3.77 16 15 C 0.15 5.57 2.68 44.98 0.12 5.69 16 16 H 0.05 1.98 7.91 -2.39 -0.02 1.97 16 17 C 0.17 7.35 2.29 45.34 0.10 7.46 16 18 H 0.04 1.93 6.17 -2.39 -0.01 1.92 16 19 C -0.11 -4.06 4.95 31.78 0.16 -3.90 16 20 C -0.14 -5.79 7.08 31.98 0.23 -5.57 16 21 C 0.19 9.52 5.39 86.85 0.47 9.99 16 22 N -0.61 -31.89 2.64 -668.27 -1.77 -33.66 16 23 C -0.23 -13.14 9.75 84.03 0.82 -12.32 16 24 H 0.07 3.75 7.83 -2.91 -0.02 3.72 16 25 C -0.05 -3.15 5.47 84.86 0.46 -2.68 16 26 N -0.94 -57.08 10.63 21.65 0.23 -56.85 16 27 Si 0.97 46.32 29.55 68.60 2.03 48.34 16 28 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 29 H -0.30 -14.27 7.11 99.48 0.71 -13.57 16 30 H -0.27 -12.66 7.11 99.48 0.71 -11.96 16 31 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.09 0.95 8.14 -2.38 -0.02 0.93 16 33 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.10 1.97 6.98 -2.39 -0.02 1.95 16 36 H 0.22 2.98 7.46 -2.91 -0.02 2.96 16 37 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.10 1.61 4.63 -2.38 -0.01 1.60 16 39 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 42 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 43 H 0.06 2.16 5.65 -2.39 -0.01 2.15 16 44 H 0.04 1.91 7.89 -2.39 -0.02 1.90 16 45 H 0.06 2.10 5.37 -2.39 -0.01 2.09 16 46 H 0.11 3.99 5.20 -64.06 -0.33 3.66 16 47 H 0.05 2.16 8.14 -2.38 -0.02 2.14 16 48 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 49 H 0.02 1.38 7.03 -2.39 -0.02 1.37 16 50 H 0.00 -0.14 8.03 -2.39 -0.02 -0.16 16 51 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 Total: -1.00 -69.80 382.61 4.77 -65.03 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: 0.62 Total: 16.34 kcal Atomic # 6 Polarization: -1.77 SS G_CDS: 5.84 Total: 4.06 kcal Atomic # 7 Polarization: -113.56 SS G_CDS: -4.53 Total: -118.09 kcal Atomic # 8 Polarization: -16.51 SS G_CDS: 0.82 Total: -15.69 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 2.03 Total: 48.34 kcal Total: -69.80 4.77 -65.03 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025275267.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.915 kcal (2) G-P(sol) polarization free energy of solvation -69.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds