Wall clock time and date at job start Wed Apr 1 2020 05:38:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50701 * 109.47236 * 2 1 4 4 C 1.35317 * 126.66300 * 90.00362 * 3 2 1 5 5 C 1.42269 * 103.91869 * 180.02562 * 4 3 2 6 6 C 1.48332 * 126.94080 * 180.02562 * 5 4 3 7 7 O 1.21494 * 119.99507 * 5.54066 * 6 5 4 8 8 N 1.34773 * 120.00265 * 185.54513 * 6 5 4 9 9 C 1.46920 * 120.63121 * 7.42710 * 8 6 5 10 10 C 1.53199 * 108.77610 * 233.63108 * 9 8 6 11 11 C 1.53040 * 109.31072 * 305.36465 * 10 9 8 12 12 C 1.53042 * 109.53854 * 61.36146 * 11 10 9 13 13 C 1.46932 * 120.62888 * 187.44835 * 8 6 5 14 14 H 1.09000 * 109.58631 * 246.15402 * 13 8 6 15 15 C 1.52998 * 109.70429 * 6.51085 * 13 8 6 16 16 H 1.08996 * 109.87553 * 302.16720 * 15 13 8 17 17 C 1.54327 * 109.88357 * 63.18249 * 15 13 8 18 18 C 1.55155 * 102.94284 * 141.60642 * 17 15 13 19 19 C 1.54909 * 101.58196 * 324.50409 * 18 17 15 20 20 N 1.47025 * 109.88208 * 180.99183 * 15 13 8 21 21 C 1.36931 * 125.64656 * 61.61908 * 20 15 13 22 22 H 1.07994 * 120.00532 * 324.25472 * 21 20 15 23 23 C 1.38817 * 119.99456 * 144.25016 * 21 20 15 24 24 N 1.31622 * 119.99596 * 169.40345 * 23 21 20 25 25 Si 1.86800 * 120.00282 * 349.40109 * 23 21 20 26 26 H 1.48493 * 109.46889 * 87.05730 * 25 23 21 27 27 H 1.48502 * 109.47053 * 207.05808 * 25 23 21 28 28 H 1.48495 * 109.46832 * 327.05974 * 25 23 21 29 29 N 1.30989 * 106.12516 * 0.26413 * 5 4 3 30 30 O 1.20901 * 111.43697 * 359.53026 * 29 5 4 31 31 H 1.08995 * 109.47615 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47008 * 299.99996 * 1 2 3 33 33 H 1.08997 * 109.47378 * 59.99759 * 1 2 3 34 34 H 1.09003 * 109.47008 * 240.00004 * 2 1 3 35 35 H 1.09002 * 109.47129 * 120.00639 * 2 1 3 36 36 H 1.07995 * 128.03803 * 0.04271 * 4 3 2 37 37 H 1.08993 * 109.58783 * 353.41742 * 9 8 6 38 38 H 1.09005 * 109.58935 * 113.70338 * 9 8 6 39 39 H 1.08993 * 109.49889 * 185.41243 * 10 9 8 40 40 H 1.08997 * 109.49600 * 65.31336 * 10 9 8 41 41 H 1.09002 * 109.46454 * 301.34564 * 11 10 9 42 42 H 1.08996 * 109.46391 * 181.38285 * 11 10 9 43 43 H 1.09004 * 109.49644 * 58.58638 * 12 11 10 44 44 H 1.09001 * 109.49926 * 178.64855 * 12 11 10 45 45 H 1.09000 * 110.72072 * 259.97340 * 17 15 13 46 46 H 1.09000 * 110.71532 * 23.06475 * 17 15 13 47 47 H 1.09005 * 111.00171 * 82.57252 * 18 17 15 48 48 H 1.08998 * 111.00325 * 206.42179 * 18 17 15 49 49 H 1.09002 * 110.36476 * 155.84972 * 19 18 17 50 50 H 1.09004 * 110.36440 * 278.05403 * 19 18 17 51 51 H 0.97003 * 120.00014 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3017 2.1826 1.0855 5 6 2.7385 3.4198 0.5354 6 6 3.1657 4.6269 1.2841 7 8 3.2609 4.5887 2.4947 8 7 3.4481 5.7661 0.6215 9 6 3.1837 5.8792 -0.8192 10 6 4.4697 6.3238 -1.5231 11 6 4.9819 7.6121 -0.8750 12 6 5.3031 7.3512 0.5985 13 6 4.0266 6.9182 1.3263 14 1 3.3114 7.7408 1.3304 15 6 4.3650 6.5257 2.7658 16 1 3.4685 6.1696 3.2733 17 6 5.4434 5.4218 2.7691 18 6 6.3370 5.8125 3.9758 19 6 6.2972 7.3595 3.9042 20 7 4.9223 7.6826 3.4818 21 6 4.2721 8.8646 3.7167 22 1 3.5950 9.2648 2.9768 23 6 4.4835 9.5483 4.9062 24 7 4.0294 10.7754 5.0494 25 14 5.4121 8.7269 6.3035 26 1 6.8693 8.9540 6.1302 27 1 4.9713 9.3055 7.5982 28 1 5.1337 7.2683 6.2927 29 7 2.6824 3.2795 -0.7657 30 8 2.2985 2.1755 -1.0750 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8899 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5139 0.8899 36 1 2.2074 1.9137 2.1271 37 1 2.8691 4.9116 -1.2101 38 1 2.3980 6.6153 -0.9900 39 1 4.2633 6.5044 -2.5780 40 1 5.2249 5.5436 -1.4280 41 1 4.2166 8.3848 -0.9484 42 1 5.8834 7.9442 -1.3898 43 1 6.0504 6.5613 0.6736 44 1 5.6904 8.2629 1.0534 45 1 4.9919 4.4420 2.9249 46 1 6.0149 5.4383 1.8411 47 1 5.9085 5.4537 4.9117 48 1 7.3535 5.4413 3.8456 49 1 6.5042 7.7900 4.8840 50 1 7.0168 7.7239 3.1709 51 1 4.1774 11.2534 5.8805 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025288276.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:38:39 Heat of formation + Delta-G solvation = 76.733211 kcal Electronic energy + Delta-G solvation = -32927.572141 eV Core-core repulsion = 28832.052762 eV Total energy + Delta-G solvation = -4095.519378 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -46.13966 -42.04023 -39.16716 -38.32370 -35.81933 -35.26117 -34.56084 -33.76030 -32.68811 -31.81734 -31.08801 -29.10061 -26.92993 -26.24112 -25.23451 -25.03732 -24.08028 -23.29320 -22.63905 -21.57399 -21.23841 -19.65509 -18.97171 -18.82096 -18.47485 -17.97647 -17.46947 -16.92112 -16.52065 -16.23003 -15.69755 -15.45505 -15.40784 -15.26562 -15.11751 -14.86178 -14.70050 -14.53989 -14.27680 -14.20146 -14.06284 -13.46762 -13.43711 -13.18978 -13.08778 -12.92414 -12.77658 -12.62741 -12.44250 -12.37494 -11.95555 -11.88287 -11.84775 -11.79164 -11.61841 -11.55769 -11.30952 -11.16829 -11.14233 -10.73729 -10.45909 -10.41570 -9.57088 -8.76227 -8.20305 -5.61399 0.03190 0.68816 1.23883 1.35151 1.47649 1.65352 2.02684 2.04086 2.38167 2.80165 3.07963 3.29314 3.46200 3.73120 3.79267 3.86292 3.93463 3.99003 4.00811 4.05344 4.12795 4.18811 4.21693 4.31990 4.37398 4.38728 4.47615 4.56310 4.60437 4.71498 4.76237 4.78938 4.86082 4.93825 4.97020 5.00532 5.01940 5.07867 5.09474 5.13023 5.17155 5.18746 5.22160 5.31464 5.42562 5.42809 5.49121 5.69761 5.84771 6.13199 6.28540 6.77812 6.92843 7.11940 7.52395 8.19360 8.99825 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014912 B = 0.003433 C = 0.003079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1877.180825 B = 8153.078319 C = 9090.386099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.040 4.040 3 C -0.007 4.007 4 C -0.197 4.197 5 C -0.033 4.033 6 C 0.575 3.425 7 O -0.527 6.527 8 N -0.587 5.587 9 C 0.074 3.926 10 C -0.117 4.117 11 C -0.118 4.118 12 C -0.113 4.113 13 C 0.147 3.853 14 H 0.041 0.959 15 C 0.159 3.841 16 H 0.051 0.949 17 C -0.114 4.114 18 C -0.128 4.128 19 C 0.108 3.892 20 N -0.618 5.618 21 C -0.227 4.227 22 H 0.048 0.952 23 C -0.030 4.030 24 N -0.960 5.960 25 Si 0.964 3.036 26 H -0.273 1.273 27 H -0.312 1.312 28 H -0.268 1.268 29 N -0.340 5.340 30 O 0.118 5.882 31 H 0.089 0.911 32 H 0.051 0.949 33 H 0.055 0.945 34 H 0.112 0.888 35 H 0.118 0.882 36 H 0.187 0.813 37 H 0.132 0.868 38 H 0.064 0.936 39 H 0.100 0.900 40 H 0.065 0.935 41 H 0.054 0.946 42 H 0.080 0.920 43 H 0.071 0.929 44 H 0.057 0.943 45 H 0.091 0.909 46 H 0.073 0.927 47 H 0.054 0.946 48 H 0.098 0.902 49 H 0.023 0.977 50 H 0.038 0.962 51 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.866 -25.303 -16.615 30.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.078 4.078 3 C -0.070 4.070 4 C -0.220 4.220 5 C -0.190 4.190 6 C 0.362 3.638 7 O -0.404 6.404 8 N -0.320 5.320 9 C -0.048 4.048 10 C -0.155 4.155 11 C -0.155 4.155 12 C -0.151 4.151 13 C 0.042 3.958 14 H 0.059 0.941 15 C 0.054 3.946 16 H 0.069 0.931 17 C -0.151 4.151 18 C -0.166 4.166 19 C -0.016 4.016 20 N -0.344 5.344 21 C -0.356 4.356 22 H 0.065 0.935 23 C -0.225 4.225 24 N -0.605 5.605 25 Si 0.796 3.204 26 H -0.200 1.200 27 H -0.241 1.241 28 H -0.193 1.193 29 N -0.044 5.044 30 O 0.046 5.954 31 H 0.108 0.892 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.130 0.870 35 H 0.136 0.864 36 H 0.204 0.796 37 H 0.148 0.852 38 H 0.082 0.918 39 H 0.118 0.882 40 H 0.084 0.916 41 H 0.073 0.927 42 H 0.099 0.901 43 H 0.090 0.910 44 H 0.075 0.925 45 H 0.109 0.891 46 H 0.091 0.909 47 H 0.073 0.927 48 H 0.117 0.883 49 H 0.040 0.960 50 H 0.056 0.944 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.589 -24.252 -16.861 29.580 hybrid contribution 0.010 0.740 1.872 2.013 sum -1.579 -23.512 -14.989 27.929 Atomic orbital electron populations 1.21825 0.93028 1.03909 1.02268 1.20428 0.96772 0.83615 1.06970 1.25115 0.99897 0.97980 0.84024 1.22613 1.05592 0.91130 1.02624 1.23497 1.07060 0.97888 0.90584 1.17403 0.78315 0.81783 0.86266 1.90781 1.52272 1.83501 1.13828 1.48072 1.61008 1.12323 1.10600 1.22709 0.98532 1.05434 0.78132 1.21793 0.96341 0.97055 1.00306 1.21552 1.01738 0.97895 0.94346 1.21793 0.96196 1.01272 0.95875 1.21615 0.94669 0.86178 0.93304 0.94056 1.21624 0.96972 0.86058 0.89994 0.93122 1.22990 0.95456 0.98883 0.97786 1.22761 1.00872 0.94301 0.98635 1.22084 0.87410 0.95284 0.96823 1.44897 1.10455 1.12773 1.66321 1.18395 1.22402 0.95880 0.98913 0.93483 1.26006 1.00368 0.96770 0.99377 1.69884 1.51426 1.11914 1.27325 0.85575 0.77893 0.78880 0.78095 1.20030 1.24085 1.19335 1.73790 1.15936 0.99721 1.14942 1.84750 1.59415 1.16926 1.34263 0.89181 0.92947 0.92549 0.86992 0.86382 0.79596 0.85168 0.91784 0.88193 0.91581 0.92700 0.90120 0.91045 0.92467 0.89141 0.90894 0.92699 0.88337 0.95953 0.94389 0.92843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 9.89 71.98 0.71 -0.19 16 2 C -0.04 -0.23 6.50 29.85 0.19 -0.03 16 3 C -0.01 -0.10 6.73 25.01 0.17 0.07 16 4 C -0.20 -4.00 10.93 22.60 0.25 -3.75 16 5 C -0.03 -0.88 6.93 42.96 0.30 -0.58 16 6 C 0.58 19.31 6.85 86.93 0.60 19.91 16 7 O -0.53 -20.70 10.28 -3.70 -0.04 -20.74 16 8 N -0.59 -19.35 2.94 -797.87 -2.34 -21.69 16 9 C 0.07 1.92 6.33 86.37 0.55 2.47 16 10 C -0.12 -2.58 6.08 30.67 0.19 -2.40 16 11 C -0.12 -3.12 5.88 30.62 0.18 -2.94 16 12 C -0.11 -3.87 4.96 30.67 0.15 -3.72 16 13 C 0.15 5.77 2.66 44.97 0.12 5.89 16 14 H 0.04 1.90 7.58 -2.39 -0.02 1.88 16 15 C 0.16 7.09 2.30 45.34 0.10 7.19 16 16 H 0.05 2.63 5.88 -6.95 -0.04 2.59 16 17 C -0.11 -4.23 4.89 31.78 0.16 -4.07 16 18 C -0.13 -4.76 7.08 31.99 0.23 -4.54 16 19 C 0.11 4.88 6.13 86.86 0.53 5.41 16 20 N -0.62 -31.58 2.18 -668.26 -1.46 -33.04 16 21 C -0.23 -13.68 10.20 84.04 0.86 -12.83 16 22 H 0.05 3.11 7.60 -2.91 -0.02 3.09 16 23 C -0.03 -1.86 5.49 84.86 0.47 -1.40 16 24 N -0.96 -62.85 13.97 21.65 0.30 -62.55 16 25 Si 0.96 50.71 24.66 68.60 1.69 52.40 16 26 H -0.27 -13.54 6.73 99.48 0.67 -12.87 16 27 H -0.31 -16.43 7.11 99.48 0.71 -15.72 16 28 H -0.27 -13.83 6.98 99.48 0.69 -13.14 16 29 N -0.34 -7.87 8.57 -49.52 -0.42 -8.29 16 30 O 0.12 2.16 11.18 71.89 0.80 2.96 16 31 H 0.09 0.21 8.14 -2.39 -0.02 0.19 16 32 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 33 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 34 H 0.11 0.24 8.14 -2.39 -0.02 0.22 16 35 H 0.12 0.32 8.14 -2.39 -0.02 0.30 16 36 H 0.19 3.40 8.06 -2.91 -0.02 3.38 16 37 H 0.13 3.17 3.82 -38.08 -0.15 3.02 16 38 H 0.06 1.66 8.14 -2.38 -0.02 1.64 16 39 H 0.10 1.67 8.14 -2.39 -0.02 1.66 16 40 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 41 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 42 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 43 H 0.07 2.30 5.73 -2.38 -0.01 2.29 16 44 H 0.06 2.30 7.85 -2.39 -0.02 2.28 16 45 H 0.09 3.38 5.59 -4.00 -0.02 3.36 16 46 H 0.07 2.47 5.47 -2.39 -0.01 2.45 16 47 H 0.05 2.16 8.14 -2.38 -0.02 2.14 16 48 H 0.10 2.92 8.14 -2.39 -0.02 2.90 16 49 H 0.02 1.10 2.57 -2.39 -0.01 1.09 16 50 H 0.04 1.64 8.14 -2.38 -0.02 1.62 16 51 H 0.26 16.32 8.31 -92.71 -0.77 15.55 16 Total: -1.00 -75.98 378.74 5.00 -70.98 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: 0.72 Total: 15.47 kcal Atomic # 6 Polarization: -1.25 SS G_CDS: 5.74 Total: 4.49 kcal Atomic # 7 Polarization: -121.65 SS G_CDS: -3.92 Total: -125.57 kcal Atomic # 8 Polarization: -18.54 SS G_CDS: 0.77 Total: -17.78 kcal Atomic # 14 Polarization: 50.71 SS G_CDS: 1.69 Total: 52.40 kcal Total: -75.98 5.00 -70.98 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025288276.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.714 kcal (2) G-P(sol) polarization free energy of solvation -75.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.981 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds