Wall clock time and date at job start Wed Apr 1 2020 04:24:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50696 * 109.46656 * 2 1 4 4 C 1.38023 * 119.51036 * 125.28808 * 3 2 1 5 5 C 1.39931 * 119.13419 * 180.24769 * 4 3 2 6 6 C 1.48158 * 120.89372 * 179.75104 * 5 4 3 7 7 O 1.21509 * 120.00271 * 359.71570 * 6 5 4 8 8 N 1.34776 * 119.99874 * 179.72227 * 6 5 4 9 9 C 1.46501 * 120.00063 * 179.97438 * 8 6 5 10 10 H 1.08999 * 109.47462 * 325.00429 * 9 8 6 11 11 C 1.53004 * 109.46718 * 84.99820 * 9 8 6 12 12 C 1.52999 * 109.47492 * 204.99827 * 9 8 6 13 13 H 1.08999 * 109.49716 * 299.93963 * 12 9 8 14 14 C 1.53042 * 109.52252 * 179.85520 * 12 9 8 15 15 C 1.53040 * 109.53399 * 178.67024 * 14 12 9 16 16 C 1.52757 * 109.38837 * 61.23930 * 15 14 12 17 17 N 1.46933 * 109.00863 * 305.59166 * 16 15 14 18 18 C 1.36935 * 120.62781 * 233.58305 * 17 16 15 19 19 H 1.07995 * 119.99873 * 152.09995 * 18 17 16 20 20 C 1.38811 * 119.99806 * 332.09376 * 18 17 16 21 21 N 1.31615 * 120.00651 * 335.28172 * 20 18 17 22 22 Si 1.86803 * 119.99607 * 155.00135 * 20 18 17 23 23 H 1.48496 * 109.47436 * 60.00138 * 22 20 18 24 24 H 1.48503 * 109.47168 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.47355 * 300.00110 * 22 20 18 26 26 C 1.46923 * 118.73785 * 53.30252 * 17 16 15 27 27 C 1.39611 * 118.21312 * 359.48329 * 5 4 3 28 28 C 1.38850 * 118.94868 * 0.24461 * 27 5 4 29 29 O 1.35688 * 119.61992 * 180.02562 * 28 27 5 30 30 N 1.31879 * 119.51769 * 305.00296 * 3 2 1 31 31 H 1.09002 * 109.47070 * 299.99414 * 1 2 3 32 32 H 1.08995 * 109.47824 * 59.99986 * 1 2 3 33 33 H 1.09008 * 109.46915 * 180.02562 * 1 2 3 34 34 H 1.09005 * 109.46400 * 240.00878 * 2 1 3 35 35 H 1.08992 * 109.47554 * 120.00467 * 2 1 3 36 36 H 1.08000 * 120.43424 * 0.02562 * 4 3 2 37 37 H 0.96998 * 120.00042 * 359.97438 * 8 6 5 38 38 H 1.09007 * 109.47097 * 60.00564 * 11 9 8 39 39 H 1.09001 * 109.46965 * 179.97438 * 11 9 8 40 40 H 1.08994 * 109.47208 * 300.00119 * 11 9 8 41 41 H 1.08990 * 109.46013 * 298.68790 * 14 12 9 42 42 H 1.09000 * 109.45871 * 58.64982 * 14 12 9 43 43 H 1.09003 * 109.50007 * 181.32125 * 15 14 12 44 44 H 1.09008 * 109.49676 * 301.38120 * 15 14 12 45 45 H 1.08994 * 109.51278 * 185.70471 * 16 15 14 46 46 H 1.09000 * 109.43033 * 65.42089 * 16 15 14 47 47 H 0.97009 * 119.99439 * 353.96783 * 21 20 18 48 48 H 1.09006 * 109.58528 * 66.43409 * 26 17 16 49 49 H 1.09002 * 109.58420 * 186.71480 * 26 17 16 50 50 H 1.07998 * 120.52564 * 180.27278 * 27 5 4 51 51 H 0.96703 * 114.00172 * 90.00415 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 6 2.9130 1.8306 0.9805 5 6 3.3703 3.1531 0.9760 6 6 4.3119 3.6359 2.0130 7 8 4.6935 2.8816 2.8858 8 7 4.7451 4.9119 1.9883 9 6 5.6758 5.3895 3.0139 10 1 5.4477 4.9072 3.9645 11 6 7.1090 5.0491 2.6003 12 6 5.5348 6.9055 3.1645 13 1 5.7639 7.3883 2.2144 14 6 6.5040 7.4052 4.2383 15 6 6.3869 8.9258 4.3658 16 6 4.9654 9.2912 4.7892 17 7 4.0149 8.6895 3.8440 18 6 3.0715 9.4597 3.2179 19 1 2.6945 9.1698 2.2483 20 6 2.5997 10.6130 3.8297 21 7 2.6510 10.7314 5.1395 22 14 1.8992 12.0003 2.7933 23 1 0.7331 11.5011 2.0211 24 1 1.4677 13.1110 3.6795 25 1 2.9402 12.4918 1.8553 26 6 4.1000 7.2470 3.5786 27 6 2.9198 4.0038 -0.0351 28 6 2.0380 3.5088 -0.9867 29 8 1.5919 4.3236 -1.9757 30 7 1.6281 2.2528 -0.9400 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3633 -1.0277 0.0005 34 1 1.8932 -0.5137 -0.8901 35 1 1.8934 -0.5139 0.8899 36 1 3.2422 1.1405 1.7433 37 1 4.4407 5.5140 1.2913 38 1 7.3371 5.5315 1.6498 39 1 7.8015 5.4049 3.3632 40 1 7.2094 3.9691 2.4931 41 1 6.2587 6.9408 5.1933 42 1 7.5239 7.1417 3.9579 43 1 7.0941 9.2837 5.1141 44 1 6.6086 9.3896 3.4045 45 1 4.8508 10.3750 4.7826 46 1 4.7759 8.9077 5.7918 47 1 2.9364 9.9806 5.6835 48 1 3.8384 6.6934 4.4805 49 1 3.4127 6.9821 2.7751 50 1 3.2522 5.0305 -0.0768 51 1 2.1448 4.3183 -2.7691 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025484706.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:30 Heat of formation + Delta-G solvation = -37.672518 kcal Electronic energy + Delta-G solvation = -31028.566504 eV Core-core repulsion = 26928.086121 eV Total energy + Delta-G solvation = -4100.480383 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.13729 -39.78092 -38.16237 -37.52507 -35.53353 -34.39017 -33.27286 -32.52977 -30.97847 -30.53904 -29.65424 -28.50948 -25.68654 -25.09765 -24.28558 -23.19086 -22.54267 -22.11126 -20.64181 -20.46930 -19.35966 -18.81815 -17.51565 -17.35988 -17.09668 -16.00237 -15.90342 -15.71543 -15.09514 -14.90708 -14.59955 -14.34838 -14.29060 -14.03722 -13.75692 -13.66179 -13.48136 -13.38506 -12.93529 -12.67702 -12.59202 -12.39235 -12.31452 -12.10551 -11.94345 -11.74825 -11.68113 -11.36639 -11.19528 -10.96366 -10.69819 -10.44224 -10.38311 -10.27088 -10.16891 -10.06380 -9.94567 -9.87192 -9.65978 -9.32355 -9.15442 -9.09174 -8.38870 -6.91065 -6.08692 -3.25837 0.38936 0.63270 2.62050 2.91821 3.18651 3.46640 3.48165 3.50570 3.68929 4.08395 4.29769 4.54620 4.62219 4.63342 4.78493 4.85257 4.92317 4.98741 5.11370 5.14381 5.24546 5.28405 5.38527 5.41031 5.43573 5.45921 5.57913 5.61356 5.66102 5.67720 5.79435 5.86920 5.90799 5.96690 5.98485 6.11431 6.12875 6.15504 6.26823 6.37002 6.45037 6.48586 6.64821 6.67178 6.78081 7.07930 7.14661 7.18702 7.35824 7.55625 7.96152 8.01330 8.55401 9.09265 9.82182 10.26892 11.19480 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010427 B = 0.002904 C = 0.002455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2684.800133 B = 9639.753331 C =11402.016172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.073 4.073 3 C 0.150 3.850 4 C -0.125 4.125 5 C -0.065 4.065 6 C 0.559 3.441 7 O -0.530 6.530 8 N -0.708 5.708 9 C 0.147 3.853 10 H 0.089 0.911 11 C -0.161 4.161 12 C -0.111 4.111 13 H 0.073 0.927 14 C -0.101 4.101 15 C -0.136 4.136 16 C 0.148 3.852 17 N -0.598 5.598 18 C -0.351 4.351 19 H 0.055 0.945 20 C -0.023 4.023 21 N -0.915 5.915 22 Si 1.063 2.937 23 H -0.293 1.293 24 H -0.285 1.285 25 H -0.293 1.293 26 C 0.157 3.843 27 C -0.159 4.159 28 C 0.315 3.685 29 O -0.477 6.477 30 N -0.486 5.486 31 H 0.054 0.946 32 H 0.066 0.934 33 H 0.060 0.940 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.152 0.848 37 H 0.402 0.598 38 H 0.055 0.945 39 H 0.071 0.929 40 H 0.056 0.944 41 H 0.056 0.944 42 H 0.054 0.946 43 H 0.052 0.948 44 H 0.057 0.943 45 H 0.079 0.921 46 H 0.015 0.985 47 H 0.269 0.731 48 H 0.015 0.985 49 H 0.051 0.949 50 H 0.147 0.853 51 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.102 -18.141 -11.533 22.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.111 4.111 3 C 0.013 3.987 4 C -0.146 4.146 5 C -0.076 4.076 6 C 0.345 3.655 7 O -0.407 6.407 8 N -0.359 5.359 9 C 0.043 3.957 10 H 0.107 0.893 11 C -0.220 4.220 12 C -0.132 4.132 13 H 0.091 0.909 14 C -0.139 4.139 15 C -0.175 4.175 16 C 0.022 3.978 17 N -0.321 5.321 18 C -0.480 4.480 19 H 0.073 0.927 20 C -0.225 4.225 21 N -0.555 5.555 22 Si 0.893 3.107 23 H -0.220 1.220 24 H -0.211 1.211 25 H -0.221 1.221 26 C 0.031 3.969 27 C -0.181 4.181 28 C 0.136 3.864 29 O -0.283 6.283 30 N -0.206 5.206 31 H 0.073 0.927 32 H 0.085 0.915 33 H 0.079 0.921 34 H 0.103 0.897 35 H 0.102 0.898 36 H 0.169 0.831 37 H 0.237 0.763 38 H 0.074 0.926 39 H 0.089 0.911 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.073 0.927 43 H 0.071 0.929 44 H 0.076 0.924 45 H 0.097 0.903 46 H 0.033 0.967 47 H 0.080 0.920 48 H 0.033 0.967 49 H 0.070 0.930 50 H 0.164 0.836 51 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges 3.730 -17.175 -11.099 20.786 hybrid contribution 1.309 -0.900 -0.258 1.609 sum 5.039 -18.075 -11.357 21.933 Atomic orbital electron populations 1.21693 0.93801 1.01916 1.02935 1.20540 0.97316 0.89625 1.03571 1.21007 0.92548 0.95817 0.89359 1.22130 0.97362 0.95563 0.99556 1.20328 0.97519 0.94525 0.95200 1.18057 0.80536 0.82464 0.84483 1.90770 1.57875 1.55313 1.36775 1.46032 1.47183 1.11267 1.31430 1.21127 0.88090 0.95182 0.91310 0.89323 1.22206 0.96233 1.01612 1.01921 1.21975 0.99564 0.91597 1.00084 0.90868 1.21441 0.97527 0.96897 0.98049 1.21985 0.99678 0.94852 1.01029 1.20882 0.86339 0.99298 0.91253 1.44087 1.34782 1.01783 1.51466 1.19938 1.19458 1.08406 1.00193 0.92732 1.25833 0.98229 1.01267 0.97211 1.70778 1.45113 1.35557 1.04012 0.83551 0.75890 0.76468 0.74801 1.21965 1.21078 1.22066 1.20850 0.92078 0.86389 0.97628 1.22342 0.98058 1.01578 0.96157 1.18934 0.90663 0.86437 0.90359 1.84847 1.54809 1.61261 1.27424 1.66769 1.24177 1.03696 1.25975 0.92685 0.91498 0.92104 0.89654 0.89755 0.83077 0.76269 0.92553 0.91057 0.92507 0.92510 0.92749 0.92913 0.92407 0.90303 0.96678 0.91993 0.96719 0.93008 0.83563 0.74085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.77 37.16 0.36 -0.77 16 2 C -0.07 -0.55 6.33 -27.89 -0.18 -0.72 16 3 C 0.15 1.57 6.17 -82.65 -0.51 1.06 16 4 C -0.13 -1.38 9.27 -39.03 -0.36 -1.74 16 5 C -0.06 -0.78 5.91 -104.68 -0.62 -1.39 16 6 C 0.56 7.69 7.76 -12.19 -0.09 7.59 16 7 O -0.53 -8.74 16.11 5.36 0.09 -8.65 16 8 N -0.71 -9.05 4.43 -54.65 -0.24 -9.29 16 9 C 0.15 2.01 2.16 -67.93 -0.15 1.86 16 10 H 0.09 1.37 7.58 -51.93 -0.39 0.98 16 11 C -0.16 -1.89 9.14 37.16 0.34 -1.55 16 12 C -0.11 -1.75 1.97 -90.50 -0.18 -1.93 16 13 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 14 C -0.10 -1.57 4.86 -26.69 -0.13 -1.70 16 15 C -0.14 -2.45 6.06 -26.84 -0.16 -2.62 16 16 C 0.15 3.39 4.66 -3.93 -0.02 3.37 16 17 N -0.60 -14.56 2.86 -172.58 -0.49 -15.05 16 18 C -0.35 -9.60 9.49 -15.06 -0.14 -9.74 16 19 H 0.05 1.49 7.94 -52.49 -0.42 1.07 16 20 C -0.02 -0.65 4.69 -17.43 -0.08 -0.73 16 21 N -0.91 -27.26 12.40 55.49 0.69 -26.57 16 22 Si 1.06 24.99 29.99 -169.99 -5.10 19.90 16 23 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 24 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 25 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 26 C 0.16 3.17 5.56 -3.71 -0.02 3.15 16 27 C -0.16 -1.74 9.55 -38.84 -0.37 -2.11 16 28 C 0.32 3.57 7.74 -17.17 -0.13 3.44 16 29 O -0.48 -4.76 13.56 -18.77 -0.25 -5.02 16 30 N -0.49 -5.71 9.87 -9.60 -0.09 -5.80 16 31 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.60 7.94 -51.93 -0.41 0.19 16 33 H 0.06 0.36 8.14 -51.92 -0.42 -0.06 16 34 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.08 0.50 7.86 -51.93 -0.41 0.09 16 36 H 0.15 1.53 7.62 -52.49 -0.40 1.13 16 37 H 0.40 4.55 6.56 -40.82 -0.27 4.29 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.07 0.78 6.41 -51.93 -0.33 0.45 16 40 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 42 H 0.05 0.71 6.37 -51.93 -0.33 0.38 16 43 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.06 1.07 8.14 -51.92 -0.42 0.64 16 45 H 0.08 2.04 6.30 -51.93 -0.33 1.71 16 46 H 0.02 0.36 7.87 -51.93 -0.41 -0.05 16 47 H 0.27 8.10 6.71 -40.82 -0.27 7.83 16 48 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 49 H 0.05 1.04 7.44 -51.93 -0.39 0.65 16 50 H 0.15 1.36 6.53 -52.49 -0.34 1.02 16 51 H 0.40 1.85 9.06 45.56 0.41 2.27 16 LS Contribution 405.23 15.07 6.11 6.11 Total: -1.00 -33.96 405.23 -9.06 -43.01 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: -7.31 Total: 5.88 kcal Atomic # 6 Polarization: -2.08 SS G_CDS: -2.44 Total: -4.52 kcal Atomic # 7 Polarization: -56.57 SS G_CDS: -0.14 Total: -56.71 kcal Atomic # 8 Polarization: -13.50 SS G_CDS: -0.17 Total: -13.66 kcal Atomic # 14 Polarization: 24.99 SS G_CDS: -5.10 Total: 19.90 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -33.96 -9.06 -43.01 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025484706.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.341 kcal (2) G-P(sol) polarization free energy of solvation -33.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds