Wall clock time and date at job start Wed Apr 1 2020 04:24:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50696 * 109.46656 * 2 1 4 4 C 1.38023 * 119.51036 * 125.28808 * 3 2 1 5 5 C 1.39931 * 119.13419 * 180.24769 * 4 3 2 6 6 C 1.48158 * 120.89372 * 179.75104 * 5 4 3 7 7 O 1.21509 * 120.00271 * 359.71570 * 6 5 4 8 8 N 1.34776 * 119.99874 * 179.72227 * 6 5 4 9 9 C 1.46501 * 120.00063 * 179.97438 * 8 6 5 10 10 H 1.08999 * 109.47462 * 325.00429 * 9 8 6 11 11 C 1.53004 * 109.46718 * 84.99820 * 9 8 6 12 12 C 1.52999 * 109.47492 * 204.99827 * 9 8 6 13 13 H 1.08999 * 109.49716 * 299.93963 * 12 9 8 14 14 C 1.53042 * 109.52252 * 179.85520 * 12 9 8 15 15 C 1.53040 * 109.53399 * 178.67024 * 14 12 9 16 16 C 1.52757 * 109.38837 * 61.23930 * 15 14 12 17 17 N 1.46933 * 109.00863 * 305.59166 * 16 15 14 18 18 C 1.36935 * 120.62781 * 233.58305 * 17 16 15 19 19 H 1.07995 * 119.99873 * 152.09995 * 18 17 16 20 20 C 1.38811 * 119.99806 * 332.09376 * 18 17 16 21 21 N 1.31615 * 120.00651 * 335.28172 * 20 18 17 22 22 Si 1.86803 * 119.99607 * 155.00135 * 20 18 17 23 23 H 1.48496 * 109.47436 * 60.00138 * 22 20 18 24 24 H 1.48503 * 109.47168 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.47355 * 300.00110 * 22 20 18 26 26 C 1.46923 * 118.73785 * 53.30252 * 17 16 15 27 27 C 1.39611 * 118.21312 * 359.48329 * 5 4 3 28 28 C 1.38850 * 118.94868 * 0.24461 * 27 5 4 29 29 O 1.35688 * 119.61992 * 180.02562 * 28 27 5 30 30 N 1.31879 * 119.51769 * 305.00296 * 3 2 1 31 31 H 1.09002 * 109.47070 * 299.99414 * 1 2 3 32 32 H 1.08995 * 109.47824 * 59.99986 * 1 2 3 33 33 H 1.09008 * 109.46915 * 180.02562 * 1 2 3 34 34 H 1.09005 * 109.46400 * 240.00878 * 2 1 3 35 35 H 1.08992 * 109.47554 * 120.00467 * 2 1 3 36 36 H 1.08000 * 120.43424 * 0.02562 * 4 3 2 37 37 H 0.96998 * 120.00042 * 359.97438 * 8 6 5 38 38 H 1.09007 * 109.47097 * 60.00564 * 11 9 8 39 39 H 1.09001 * 109.46965 * 179.97438 * 11 9 8 40 40 H 1.08994 * 109.47208 * 300.00119 * 11 9 8 41 41 H 1.08990 * 109.46013 * 298.68790 * 14 12 9 42 42 H 1.09000 * 109.45871 * 58.64982 * 14 12 9 43 43 H 1.09003 * 109.50007 * 181.32125 * 15 14 12 44 44 H 1.09008 * 109.49676 * 301.38120 * 15 14 12 45 45 H 1.08994 * 109.51278 * 185.70471 * 16 15 14 46 46 H 1.09000 * 109.43033 * 65.42089 * 16 15 14 47 47 H 0.97009 * 119.99439 * 353.96783 * 21 20 18 48 48 H 1.09006 * 109.58528 * 66.43409 * 26 17 16 49 49 H 1.09002 * 109.58420 * 186.71480 * 26 17 16 50 50 H 1.07998 * 120.52564 * 180.27278 * 27 5 4 51 51 H 0.96703 * 114.00172 * 90.00415 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 6 2.9130 1.8306 0.9805 5 6 3.3703 3.1531 0.9760 6 6 4.3119 3.6359 2.0130 7 8 4.6935 2.8816 2.8858 8 7 4.7451 4.9119 1.9883 9 6 5.6758 5.3895 3.0139 10 1 5.4477 4.9072 3.9645 11 6 7.1090 5.0491 2.6003 12 6 5.5348 6.9055 3.1645 13 1 5.7639 7.3883 2.2144 14 6 6.5040 7.4052 4.2383 15 6 6.3869 8.9258 4.3658 16 6 4.9654 9.2912 4.7892 17 7 4.0149 8.6895 3.8440 18 6 3.0715 9.4597 3.2179 19 1 2.6945 9.1698 2.2483 20 6 2.5997 10.6130 3.8297 21 7 2.6510 10.7314 5.1395 22 14 1.8992 12.0003 2.7933 23 1 0.7331 11.5011 2.0211 24 1 1.4677 13.1110 3.6795 25 1 2.9402 12.4918 1.8553 26 6 4.1000 7.2470 3.5786 27 6 2.9198 4.0038 -0.0351 28 6 2.0380 3.5088 -0.9867 29 8 1.5919 4.3236 -1.9757 30 7 1.6281 2.2528 -0.9400 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3633 -1.0277 0.0005 34 1 1.8932 -0.5137 -0.8901 35 1 1.8934 -0.5139 0.8899 36 1 3.2422 1.1405 1.7433 37 1 4.4407 5.5140 1.2913 38 1 7.3371 5.5315 1.6498 39 1 7.8015 5.4049 3.3632 40 1 7.2094 3.9691 2.4931 41 1 6.2587 6.9408 5.1933 42 1 7.5239 7.1417 3.9579 43 1 7.0941 9.2837 5.1141 44 1 6.6086 9.3896 3.4045 45 1 4.8508 10.3750 4.7826 46 1 4.7759 8.9077 5.7918 47 1 2.9364 9.9806 5.6835 48 1 3.8384 6.6934 4.4805 49 1 3.4127 6.9821 2.7751 50 1 3.2522 5.0305 -0.0768 51 1 2.1448 4.3183 -2.7691 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025484706.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:29 Heat of formation + Delta-G solvation = -62.115638 kcal Electronic energy + Delta-G solvation = -31029.626437 eV Core-core repulsion = 26928.086121 eV Total energy + Delta-G solvation = -4101.540316 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.03687 -40.86605 -39.58708 -38.32943 -36.97872 -35.28659 -34.73957 -33.45099 -32.41754 -32.16625 -30.47207 -29.86129 -27.14196 -26.41027 -25.25639 -24.36698 -23.81578 -23.38395 -21.95436 -21.53924 -20.71830 -19.80374 -19.38327 -18.33143 -18.08389 -16.95406 -16.84705 -16.70470 -16.23657 -16.16817 -15.97890 -15.66915 -15.45500 -15.36314 -15.05846 -14.98531 -14.92234 -14.28042 -14.26025 -14.01320 -13.80707 -13.50818 -13.38479 -13.02163 -12.94423 -12.83563 -12.67967 -12.61557 -12.39088 -12.35333 -11.97692 -11.94886 -11.90605 -11.75173 -11.65691 -11.53619 -11.29843 -11.10041 -11.07257 -10.57205 -10.48533 -10.21022 -9.95503 -8.94628 -8.25137 -5.41486 -0.51562 -0.17888 1.57671 1.63856 1.64799 1.83331 1.89215 2.41057 2.59940 2.64578 3.19374 3.28840 3.38573 3.45848 3.77278 3.79874 3.82970 3.90346 3.94324 4.10817 4.20352 4.22546 4.33244 4.36481 4.37800 4.43329 4.50362 4.61583 4.64442 4.72717 4.74573 4.77379 4.83193 4.86133 4.94220 5.00319 5.03988 5.09524 5.16390 5.16659 5.19352 5.25311 5.28419 5.37843 5.41325 5.44150 5.54862 5.81798 6.31209 6.37569 6.52137 6.77822 6.95893 7.04536 7.76835 8.21545 8.98941 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010427 B = 0.002904 C = 0.002455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2684.800133 B = 9639.753331 C =11402.016172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.072 4.072 3 C 0.149 3.851 4 C -0.130 4.130 5 C -0.076 4.076 6 C 0.560 3.440 7 O -0.561 6.561 8 N -0.704 5.704 9 C 0.154 3.846 10 H 0.070 0.930 11 C -0.153 4.153 12 C -0.094 4.094 13 H 0.080 0.920 14 C -0.098 4.098 15 C -0.125 4.125 16 C 0.151 3.849 17 N -0.616 5.616 18 C -0.353 4.353 19 H 0.053 0.947 20 C -0.077 4.077 21 N -0.944 5.944 22 Si 1.113 2.887 23 H -0.277 1.277 24 H -0.294 1.294 25 H -0.276 1.276 26 C 0.156 3.844 27 C -0.159 4.159 28 C 0.310 3.690 29 O -0.487 6.487 30 N -0.501 5.501 31 H 0.042 0.958 32 H 0.051 0.949 33 H 0.081 0.919 34 H 0.099 0.901 35 H 0.103 0.897 36 H 0.158 0.842 37 H 0.409 0.591 38 H 0.070 0.930 39 H 0.084 0.916 40 H 0.052 0.948 41 H 0.052 0.948 42 H 0.093 0.907 43 H 0.075 0.925 44 H 0.057 0.943 45 H 0.042 0.958 46 H -0.003 1.003 47 H 0.252 0.748 48 H -0.003 1.003 49 H 0.048 0.952 50 H 0.160 0.840 51 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.443 -19.129 -13.457 24.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.110 4.110 3 C 0.012 3.988 4 C -0.151 4.151 5 C -0.087 4.087 6 C 0.347 3.653 7 O -0.441 6.441 8 N -0.355 5.355 9 C 0.050 3.950 10 H 0.088 0.912 11 C -0.211 4.211 12 C -0.114 4.114 13 H 0.098 0.902 14 C -0.135 4.135 15 C -0.164 4.164 16 C 0.026 3.974 17 N -0.340 5.340 18 C -0.483 4.483 19 H 0.071 0.929 20 C -0.273 4.273 21 N -0.586 5.586 22 Si 0.938 3.062 23 H -0.203 1.203 24 H -0.221 1.221 25 H -0.202 1.202 26 C 0.031 3.969 27 C -0.181 4.181 28 C 0.131 3.869 29 O -0.297 6.297 30 N -0.222 5.222 31 H 0.062 0.938 32 H 0.070 0.930 33 H 0.100 0.900 34 H 0.118 0.882 35 H 0.121 0.879 36 H 0.175 0.825 37 H 0.247 0.753 38 H 0.089 0.911 39 H 0.103 0.897 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.112 0.888 43 H 0.093 0.907 44 H 0.076 0.924 45 H 0.061 0.939 46 H 0.015 0.985 47 H 0.062 0.938 48 H 0.015 0.985 49 H 0.067 0.933 50 H 0.177 0.823 51 H 0.284 0.716 Dipole moment (debyes) X Y Z Total from point charges 5.099 -18.180 -13.071 22.965 hybrid contribution 0.830 -0.649 0.333 1.105 sum 5.929 -18.830 -12.739 23.494 Atomic orbital electron populations 1.21669 0.93983 1.02859 1.01582 1.20672 0.97030 0.88098 1.05177 1.21449 0.91918 0.96876 0.88594 1.22281 0.97494 0.95403 0.99916 1.20257 0.97884 0.95265 0.95297 1.18280 0.80336 0.82321 0.84357 1.90749 1.59119 1.56117 1.38108 1.45991 1.46931 1.11237 1.31299 1.20983 0.89830 0.93203 0.91014 0.91196 1.22137 0.94394 1.01541 1.03038 1.21746 0.96226 0.93155 1.00319 0.90206 1.21454 0.99526 0.94736 0.97834 1.21846 0.96269 0.96867 1.01444 1.20781 0.89319 0.96948 0.90394 1.44341 1.34799 1.03383 1.51481 1.20225 1.19385 1.08679 1.00023 0.92883 1.27189 0.98824 1.03915 0.97418 1.70904 1.47736 1.34974 1.04983 0.82878 0.76174 0.73548 0.73607 1.20292 1.22051 1.20224 1.20958 0.95321 0.83953 0.96696 1.22418 0.97972 1.02020 0.95693 1.19074 0.90530 0.86525 0.90761 1.84794 1.55645 1.60991 1.28285 1.66851 1.24620 1.04104 1.26600 0.93832 0.92993 0.90037 0.88248 0.87897 0.82462 0.75350 0.91082 0.89733 0.92928 0.92881 0.88830 0.90665 0.92421 0.93903 0.98535 0.93786 0.98542 0.93347 0.82285 0.71560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 9.77 71.98 0.70 -1.34 16 2 C -0.07 -0.96 6.33 29.85 0.19 -0.78 16 3 C 0.15 2.95 6.17 42.50 0.26 3.22 16 4 C -0.13 -2.77 9.27 22.63 0.21 -2.56 16 5 C -0.08 -1.77 5.91 -19.90 -0.12 -1.89 16 6 C 0.56 15.06 7.76 86.88 0.67 15.73 16 7 O -0.56 -18.34 16.11 -3.74 -0.06 -18.40 16 8 N -0.70 -17.14 4.43 -445.11 -1.97 -19.12 16 9 C 0.15 3.96 2.16 44.99 0.10 4.05 16 10 H 0.07 2.11 7.58 -2.39 -0.02 2.09 16 11 C -0.15 -3.10 9.14 71.98 0.66 -2.44 16 12 C -0.09 -2.80 1.97 -10.72 -0.02 -2.82 16 13 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 14 C -0.10 -2.78 4.86 30.62 0.15 -2.63 16 15 C -0.13 -4.32 6.06 30.53 0.19 -4.13 16 16 C 0.15 7.08 4.66 86.22 0.40 7.48 16 17 N -0.62 -30.45 2.86 -699.93 -2.00 -32.45 16 18 C -0.35 -19.57 9.49 84.03 0.80 -18.77 16 19 H 0.05 2.90 7.94 -2.91 -0.02 2.88 16 20 C -0.08 -4.40 4.69 84.86 0.40 -4.00 16 21 N -0.94 -58.12 12.40 21.65 0.27 -57.85 16 22 Si 1.11 50.74 29.99 68.60 2.06 52.79 16 23 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 24 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 25 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 26 C 0.16 6.33 5.56 86.36 0.48 6.81 16 27 C -0.16 -3.31 9.55 22.75 0.22 -3.10 16 28 C 0.31 6.72 7.74 84.78 0.66 7.38 16 29 O -0.49 -9.10 13.56 -90.07 -1.22 -10.32 16 30 N -0.50 -11.30 9.87 -297.16 -2.93 -14.24 16 31 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.05 0.89 7.94 -2.39 -0.02 0.87 16 33 H 0.08 0.81 8.14 -2.38 -0.02 0.79 16 34 H 0.10 1.08 8.14 -2.38 -0.02 1.06 16 35 H 0.10 1.00 7.86 -2.39 -0.02 0.98 16 36 H 0.16 3.07 7.62 -2.91 -0.02 3.04 16 37 H 0.41 8.68 6.56 -92.71 -0.61 8.07 16 38 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 39 H 0.08 1.50 6.41 -2.39 -0.02 1.49 16 40 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 42 H 0.09 2.03 6.37 -2.39 -0.02 2.01 16 43 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 44 H 0.06 2.00 8.14 -2.38 -0.02 1.98 16 45 H 0.04 2.29 6.30 -2.39 -0.02 2.28 16 46 H 0.00 -0.16 7.87 -2.39 -0.02 -0.18 16 47 H 0.25 15.93 6.71 -92.70 -0.62 15.31 16 48 H 0.00 -0.15 8.14 -2.38 -0.02 -0.17 16 49 H 0.05 1.95 7.44 -2.39 -0.02 1.93 16 50 H 0.16 2.75 6.53 -2.91 -0.02 2.73 16 51 H 0.42 3.24 9.06 -74.06 -0.67 2.57 16 Total: -1.00 -75.55 405.23 -0.10 -75.65 By element: Atomic # 1 Polarization: 23.91 SS G_CDS: -0.18 Total: 23.74 kcal Atomic # 6 Polarization: -5.74 SS G_CDS: 5.94 Total: 0.20 kcal Atomic # 7 Polarization: -117.02 SS G_CDS: -6.64 Total: -123.66 kcal Atomic # 8 Polarization: -27.44 SS G_CDS: -1.28 Total: -28.72 kcal Atomic # 14 Polarization: 50.74 SS G_CDS: 2.06 Total: 52.79 kcal Total: -75.55 -0.10 -75.65 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025484706.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.533 kcal (2) G-P(sol) polarization free energy of solvation -75.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds