Wall clock time and date at job start Wed Apr 1 2020 05:00:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.50697 * 109.47706 * 2 1 4 4 C 1.38355 * 120.26788 * 90.00188 * 3 2 1 5 5 N 1.31885 * 121.18468 * 180.02562 * 4 3 2 6 6 C 1.32234 * 121.79879 * 359.97438 * 5 4 3 7 7 O 1.35437 * 119.79691 * 180.02562 * 6 5 4 8 8 C 1.40272 * 120.40527 * 0.02562 * 6 5 4 9 9 C 1.47527 * 120.60239 * 179.97438 * 8 6 5 10 10 O 1.21589 * 119.99619 * 0.02562 * 9 8 6 11 11 N 1.34775 * 120.00190 * 180.02562 * 9 8 6 12 12 C 1.46496 * 120.00059 * 180.02562 * 11 9 8 13 13 H 1.09010 * 109.46946 * 34.99826 * 12 11 9 14 14 C 1.53000 * 109.47184 * 275.00262 * 12 11 9 15 15 C 1.52999 * 109.47356 * 154.99687 * 12 11 9 16 16 H 1.08999 * 109.49716 * 304.93757 * 15 12 11 17 17 C 1.53042 * 109.52252 * 184.85314 * 15 12 11 18 18 C 1.53040 * 109.53399 * 178.67024 * 17 15 12 19 19 C 1.52757 * 109.38837 * 61.23930 * 18 17 15 20 20 N 1.46933 * 109.00863 * 305.59166 * 19 18 17 21 21 C 1.36935 * 120.62781 * 233.58305 * 20 19 18 22 22 H 1.07995 * 119.99873 * 152.09995 * 21 20 19 23 23 C 1.38811 * 119.99806 * 332.09376 * 21 20 19 24 24 N 1.31615 * 120.00651 * 335.28172 * 23 21 20 25 25 Si 1.86803 * 119.99607 * 155.00135 * 23 21 20 26 26 H 1.48496 * 109.47436 * 60.00138 * 25 23 21 27 27 H 1.48503 * 109.47168 * 180.02562 * 25 23 21 28 28 H 1.48498 * 109.47355 * 300.00110 * 25 23 21 29 29 C 1.46923 * 118.73785 * 53.30252 * 20 19 18 30 30 C 1.38337 * 120.27342 * 270.26947 * 3 2 1 31 31 H 1.09003 * 109.47803 * 59.99159 * 1 2 3 32 32 H 1.09001 * 109.47538 * 179.97438 * 1 2 3 33 33 H 1.09008 * 109.47069 * 299.99781 * 1 2 3 34 34 H 1.09008 * 109.47069 * 240.00219 * 2 1 3 35 35 H 1.08996 * 109.47423 * 120.00943 * 2 1 3 36 36 H 1.08002 * 119.41119 * 359.97438 * 4 3 2 37 37 H 0.96702 * 113.99442 * 269.98031 * 7 6 5 38 38 H 0.96998 * 119.99618 * 359.97438 * 11 9 8 39 39 H 1.09002 * 109.46490 * 299.99753 * 14 12 11 40 40 H 1.08994 * 109.47486 * 59.99591 * 14 12 11 41 41 H 1.09003 * 109.47352 * 179.97438 * 14 12 11 42 42 H 1.08990 * 109.46013 * 298.68790 * 17 15 12 43 43 H 1.09000 * 109.45871 * 58.64982 * 17 15 12 44 44 H 1.09003 * 109.50007 * 181.32125 * 18 17 15 45 45 H 1.09008 * 109.49676 * 301.38120 * 18 17 15 46 46 H 1.08994 * 109.51278 * 185.70471 * 19 18 17 47 47 H 1.09000 * 109.43033 * 65.42089 * 19 18 17 48 48 H 0.97009 * 119.99439 * 353.96783 * 24 23 21 49 49 H 1.09006 * 109.58528 * 66.43409 * 29 20 19 50 50 H 1.09001 * 109.58720 * 186.85700 * 29 20 19 51 51 H 1.07997 * 120.82695 * 359.97438 * 30 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.2649 2.0782 1.1949 5 7 2.7041 3.3216 1.2160 6 6 2.9424 3.9954 0.1035 7 8 3.3934 5.2706 0.1724 8 6 2.7309 3.3975 -1.1477 9 6 2.9947 4.1454 -2.3917 10 8 3.3997 5.2906 -2.3382 11 7 2.7868 3.5593 -3.5874 12 6 3.0493 4.3018 -4.8226 13 1 3.9072 4.9583 -4.6766 14 6 1.8216 5.1399 -5.1846 15 6 3.3473 3.3178 -5.9557 16 1 4.1667 2.6618 -5.6617 17 6 3.7399 4.0925 -7.2158 18 6 4.0701 3.1077 -8.3398 19 6 2.8355 2.2651 -8.6548 20 7 2.3600 1.6316 -7.4173 21 6 2.1693 0.2770 -7.3557 22 1 2.2653 -0.2395 -6.4122 23 6 1.8525 -0.4323 -8.5062 24 7 1.2686 0.1778 -9.5157 25 14 2.2622 -2.2510 -8.6246 26 1 1.5595 -2.9881 -7.5439 27 1 1.8251 -2.7719 -9.9448 28 1 3.7281 -2.4387 -8.4796 29 6 2.0990 2.4783 -6.2453 30 6 2.2596 2.0801 -1.1947 31 1 -0.3635 0.5140 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3634 0.5138 0.8901 34 1 1.8932 -0.5138 -0.8901 35 1 1.8933 -0.5139 0.8898 36 1 2.0828 1.5643 2.1272 37 1 2.6914 5.9354 0.1922 38 1 2.4640 2.6456 -3.6300 39 1 0.9638 4.4833 -5.3307 40 1 1.6093 5.8409 -4.3775 41 1 2.0170 5.6927 -6.1035 42 1 2.9109 4.7297 -7.5233 43 1 4.6134 4.7095 -7.0053 44 1 4.3723 3.6595 -9.2299 45 1 4.8832 2.4540 -8.0236 46 1 3.0954 1.4964 -9.3824 47 1 2.0531 2.9061 -9.0610 48 1 0.9804 1.0996 -9.4242 49 1 1.2553 3.1371 -6.4511 50 1 1.8731 1.8502 -5.3836 51 1 2.0818 1.5894 -2.1402 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025581149.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:00:04 Heat of formation + Delta-G solvation = -58.694329 kcal Electronic energy + Delta-G solvation = -31457.395564 eV Core-core repulsion = 27356.003607 eV Total energy + Delta-G solvation = -4101.391957 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.05699 -40.74159 -39.50365 -38.40360 -36.84262 -35.24574 -34.92342 -33.77475 -32.23696 -32.01634 -30.10409 -29.50092 -27.05654 -26.25443 -25.16743 -24.98142 -24.01637 -23.13538 -21.95834 -21.34986 -20.30643 -19.87066 -19.35939 -18.48743 -18.26573 -17.17015 -16.82767 -16.35922 -16.28352 -15.95642 -15.74881 -15.47223 -15.43359 -15.30017 -15.00899 -14.91590 -14.66721 -14.40570 -14.23294 -13.85520 -13.76295 -13.70294 -13.58451 -13.14037 -12.94148 -12.83337 -12.74697 -12.61202 -12.36729 -12.12106 -11.91509 -11.87575 -11.85363 -11.72903 -11.63139 -11.42930 -11.20496 -11.07177 -11.04003 -10.49017 -10.42241 -10.19603 -9.82638 -8.88601 -8.20687 -5.36485 -0.53902 -0.02926 1.59727 1.67058 1.73177 1.85193 1.97868 2.44422 2.67157 2.70462 3.23849 3.38844 3.46535 3.60271 3.65362 3.78061 3.83606 3.87917 3.95133 4.09235 4.23308 4.24468 4.32557 4.35768 4.47734 4.50147 4.54147 4.56633 4.65052 4.73320 4.75719 4.79809 4.87629 4.90009 4.93188 5.03336 5.09624 5.15558 5.15602 5.22735 5.29847 5.30950 5.33572 5.35761 5.43733 5.46883 5.56767 5.86254 6.36833 6.42645 6.50340 6.75420 7.07365 7.09186 7.80779 8.26589 9.04162 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010097 B = 0.003251 C = 0.002570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2772.427042 B = 8609.426131 C =10892.646271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.078 4.078 3 C -0.141 4.141 4 C 0.152 3.848 5 N -0.524 5.524 6 C 0.347 3.653 7 O -0.478 6.478 8 C -0.214 4.214 9 C 0.563 3.437 10 O -0.555 6.555 11 N -0.711 5.711 12 C 0.160 3.840 13 H 0.081 0.919 14 C -0.158 4.158 15 C -0.098 4.098 16 H 0.063 0.937 17 C -0.098 4.098 18 C -0.127 4.127 19 C 0.153 3.847 20 N -0.616 5.616 21 C -0.353 4.353 22 H 0.055 0.945 23 C -0.074 4.074 24 N -0.944 5.944 25 Si 1.110 2.890 26 H -0.272 1.272 27 H -0.296 1.296 28 H -0.283 1.283 29 C 0.154 3.846 30 C -0.028 4.028 31 H 0.045 0.955 32 H 0.071 0.929 33 H 0.062 0.938 34 H 0.080 0.920 35 H 0.101 0.899 36 H 0.198 0.802 37 H 0.416 0.584 38 H 0.405 0.595 39 H 0.059 0.941 40 H 0.053 0.947 41 H 0.077 0.923 42 H 0.067 0.933 43 H 0.076 0.924 44 H 0.073 0.927 45 H 0.048 0.952 46 H 0.041 0.959 47 H 0.004 0.996 48 H 0.255 0.745 49 H 0.026 0.974 50 H 0.051 0.949 51 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.029 3.741 19.392 19.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.116 4.116 3 C -0.143 4.143 4 C -0.005 4.005 5 N -0.243 5.243 6 C 0.167 3.833 7 O -0.287 6.287 8 C -0.221 4.221 9 C 0.350 3.650 10 O -0.434 6.434 11 N -0.363 5.363 12 C 0.055 3.945 13 H 0.099 0.901 14 C -0.216 4.216 15 C -0.119 4.119 16 H 0.081 0.919 17 C -0.136 4.136 18 C -0.166 4.166 19 C 0.028 3.972 20 N -0.340 5.340 21 C -0.483 4.483 22 H 0.072 0.928 23 C -0.271 4.271 24 N -0.586 5.586 25 Si 0.935 3.065 26 H -0.198 1.198 27 H -0.222 1.222 28 H -0.209 1.209 29 C 0.029 3.971 30 C -0.054 4.054 31 H 0.064 0.936 32 H 0.090 0.910 33 H 0.081 0.919 34 H 0.099 0.901 35 H 0.119 0.881 36 H 0.215 0.785 37 H 0.277 0.723 38 H 0.242 0.758 39 H 0.078 0.922 40 H 0.072 0.928 41 H 0.095 0.905 42 H 0.086 0.914 43 H 0.094 0.906 44 H 0.092 0.908 45 H 0.067 0.933 46 H 0.059 0.941 47 H 0.022 0.978 48 H 0.065 0.935 49 H 0.043 0.957 50 H 0.069 0.931 51 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 0.937 3.469 19.174 19.508 hybrid contribution -0.774 0.935 -0.174 1.226 sum 0.163 4.404 19.000 19.504 Atomic orbital electron populations 1.21786 0.94041 1.02826 1.02046 1.20568 0.96493 0.89479 1.05020 1.21143 1.00994 0.99404 0.92804 1.23275 0.89898 0.87879 0.99477 1.67388 1.14712 1.11119 1.31075 1.19307 0.89948 0.87203 0.86817 1.84671 1.36304 1.12350 1.95418 1.21052 1.09471 0.97671 0.93882 1.18057 0.77342 0.86050 0.83547 1.90773 1.46609 1.18508 1.87521 1.46030 1.67261 1.17912 1.05069 1.20880 0.98670 0.92804 0.82106 0.90071 1.22198 0.97704 0.99738 1.01983 1.21735 0.99091 0.96516 0.94518 0.91868 1.21416 1.01635 0.96981 0.93528 1.21858 0.97893 0.97860 0.99004 1.20743 0.93257 0.94340 0.88900 1.44312 1.76549 1.03541 1.09641 1.20215 1.46217 0.84226 0.97597 0.92756 1.27062 0.96662 1.08899 0.94447 1.70895 1.37841 1.14160 1.35750 0.82922 0.76522 0.71297 0.75790 1.19793 1.22199 1.20943 1.21100 0.94319 0.92197 0.89518 1.21902 0.91685 0.91361 1.00440 0.93560 0.91002 0.91913 0.90128 0.88084 0.78517 0.72277 0.75772 0.92165 0.92829 0.90464 0.91432 0.90550 0.90813 0.93269 0.94082 0.97780 0.93549 0.95671 0.93064 0.82820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 9.89 71.98 0.71 -0.81 16 2 C -0.08 -0.78 6.08 29.84 0.18 -0.59 16 3 C -0.14 -2.09 5.14 -19.81 -0.10 -2.19 16 4 C 0.15 2.37 10.84 84.71 0.92 3.28 16 5 N -0.52 -11.77 10.37 -307.99 -3.19 -14.96 16 6 C 0.35 8.72 7.77 85.13 0.66 9.38 16 7 O -0.48 -12.42 11.66 -66.51 -0.78 -13.20 16 8 C -0.21 -5.14 5.90 -19.91 -0.12 -5.25 16 9 C 0.56 15.65 7.74 86.69 0.67 16.32 16 10 O -0.55 -18.57 14.85 16.82 0.25 -18.33 16 11 N -0.71 -18.04 4.97 -445.71 -2.21 -20.26 16 12 C 0.16 4.29 2.35 44.99 0.11 4.40 16 13 H 0.08 2.31 7.58 -2.38 -0.02 2.30 16 14 C -0.16 -4.01 8.76 71.98 0.63 -3.38 16 15 C -0.10 -2.99 2.27 -10.72 -0.02 -3.02 16 16 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 17 C -0.10 -2.88 4.89 30.62 0.15 -2.73 16 18 C -0.13 -4.48 6.06 30.53 0.19 -4.29 16 19 C 0.15 6.98 4.66 86.22 0.40 7.38 16 20 N -0.62 -29.10 2.86 -699.93 -2.00 -31.10 16 21 C -0.35 -18.72 9.49 84.03 0.80 -17.92 16 22 H 0.05 2.82 7.94 -2.91 -0.02 2.80 16 23 C -0.07 -4.08 4.69 84.86 0.40 -3.68 16 24 N -0.94 -56.21 12.40 21.65 0.27 -55.94 16 25 Si 1.11 49.14 29.99 68.60 2.06 51.19 16 26 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 27 H -0.30 -13.53 7.11 99.48 0.71 -12.82 16 28 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 29 C 0.15 5.71 5.26 86.36 0.45 6.16 16 30 C -0.03 -0.52 9.31 22.72 0.21 -0.31 16 31 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.06 0.56 8.14 -2.38 -0.02 0.54 16 34 H 0.08 0.85 8.09 -2.38 -0.02 0.83 16 35 H 0.10 0.61 8.09 -2.39 -0.02 0.59 16 36 H 0.20 1.58 8.06 -2.91 -0.02 1.55 16 37 H 0.42 7.44 9.06 -74.06 -0.67 6.77 16 38 H 0.41 9.29 5.37 -92.71 -0.50 8.79 16 39 H 0.06 1.58 6.23 -2.39 -0.01 1.57 16 40 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 41 H 0.08 1.82 6.60 -2.39 -0.02 1.81 16 42 H 0.07 1.92 6.63 -2.39 -0.02 1.91 16 43 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 44 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 45 H 0.05 1.81 8.14 -2.38 -0.02 1.79 16 46 H 0.04 2.16 6.30 -2.39 -0.02 2.14 16 47 H 0.00 0.20 7.87 -2.39 -0.02 0.18 16 48 H 0.25 15.43 6.71 -92.70 -0.62 14.81 16 49 H 0.03 0.95 6.07 -2.38 -0.01 0.94 16 50 H 0.05 1.82 6.74 -2.39 -0.02 1.81 16 51 H 0.15 2.43 6.51 -2.91 -0.02 2.41 16 Total: -1.00 -72.49 398.53 0.57 -71.92 By element: Atomic # 1 Polarization: 27.98 SS G_CDS: -0.06 Total: 27.92 kcal Atomic # 6 Polarization: -3.49 SS G_CDS: 6.23 Total: 2.75 kcal Atomic # 7 Polarization: -115.12 SS G_CDS: -7.14 Total: -122.26 kcal Atomic # 8 Polarization: -31.00 SS G_CDS: -0.53 Total: -31.52 kcal Atomic # 14 Polarization: 49.14 SS G_CDS: 2.06 Total: 51.19 kcal Total: -72.49 0.57 -71.92 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025581149.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.227 kcal (2) G-P(sol) polarization free energy of solvation -72.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds