Wall clock time and date at job start Wed Apr 1 2020 05:44:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50695 * 109.47521 * 2 1 4 4 N 1.30015 * 127.33417 * 270.14877 * 3 2 1 5 5 O 1.20662 * 112.30069 * 180.27147 * 4 3 2 6 6 C 1.33495 * 113.15550 * 359.73031 * 5 4 3 7 7 C 1.50696 * 126.82605 * 179.97438 * 6 5 4 8 8 C 1.37360 * 106.34225 * 0.02562 * 6 5 4 9 9 C 1.47401 * 128.56369 * 179.97438 * 8 6 5 10 10 O 1.21607 * 119.99745 * 90.02367 * 9 8 6 11 11 N 1.34778 * 119.99752 * 270.02333 * 9 8 6 12 12 C 1.46928 * 120.55057 * 179.97438 * 11 9 8 13 13 C 1.53342 * 108.68473 * 125.63017 * 12 11 9 14 14 C 1.52110 * 109.44249 * 53.30481 * 13 12 11 15 15 C 1.54385 * 110.50739 * 64.08966 * 14 13 12 16 16 C 1.54457 * 102.87109 * 83.33374 * 15 14 13 17 17 N 1.47083 * 107.29725 * 21.50085 * 16 15 14 18 18 C 1.36935 * 125.62931 * 180.96847 * 17 16 15 19 19 H 1.08003 * 119.99937 * 168.95343 * 18 17 16 20 20 C 1.38811 * 119.99964 * 348.94815 * 18 17 16 21 21 N 1.31619 * 119.99929 * 165.65470 * 20 18 17 22 22 Si 1.86799 * 120.00069 * 345.65523 * 20 18 17 23 23 H 1.48500 * 109.47088 * 185.28736 * 22 20 18 24 24 H 1.48495 * 109.46844 * 305.28614 * 22 20 18 25 25 H 1.48497 * 109.46908 * 65.28631 * 22 20 18 26 26 C 1.47575 * 108.74515 * 1.23423 * 17 16 15 27 27 C 1.52103 * 111.59976 * 300.69054 * 14 13 12 28 28 C 1.46928 * 120.55101 * 359.97438 * 11 9 8 29 29 H 1.09000 * 109.46513 * 60.00112 * 1 2 3 30 30 H 1.09000 * 109.47249 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46916 * 300.00369 * 1 2 3 32 32 H 1.08999 * 109.46916 * 239.99630 * 2 1 3 33 33 H 1.09000 * 109.46513 * 119.99888 * 2 1 3 34 34 H 1.09004 * 109.47286 * 270.00055 * 7 6 5 35 35 H 1.09005 * 109.47704 * 30.00372 * 7 6 5 36 36 H 1.09002 * 109.46840 * 150.00183 * 7 6 5 37 37 H 1.08999 * 109.60337 * 5.87416 * 12 11 9 38 38 H 1.09002 * 109.60479 * 245.38772 * 12 11 9 39 39 H 1.08999 * 109.47461 * 293.31423 * 13 12 11 40 40 H 1.09004 * 109.48038 * 173.29557 * 13 12 11 41 41 H 1.08995 * 110.73888 * 324.98680 * 15 14 13 42 42 H 1.09004 * 110.73381 * 201.67143 * 15 14 13 43 43 H 1.09003 * 109.87682 * 262.08138 * 16 15 14 44 44 H 1.09002 * 109.88538 * 140.92812 * 16 15 14 45 45 H 0.97002 * 120.00420 * 354.93210 * 21 20 18 46 46 H 1.09003 * 110.37719 * 95.25320 * 26 17 16 47 47 H 1.08995 * 110.38134 * 217.60924 * 26 17 16 48 48 H 1.08994 * 109.47603 * 179.28981 * 27 14 13 49 49 H 1.09001 * 109.48068 * 299.31611 * 27 14 13 50 50 H 1.08992 * 109.60702 * 354.12479 * 28 11 9 51 51 H 1.08995 * 109.60156 * 114.60997 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0325 1.4207 0.0000 4 7 2.2928 2.1650 -1.0338 5 8 2.6871 3.2616 -0.7208 6 6 2.7520 3.4387 0.6008 7 6 3.2000 4.6822 1.3245 8 6 2.3303 2.2617 1.1696 9 6 2.2109 1.9231 2.5992 10 8 1.1703 2.1388 3.1903 11 7 3.2551 1.3744 3.2513 12 6 3.1496 1.0326 4.6763 13 6 3.5243 -0.4434 4.8566 14 6 4.8841 -0.7012 4.2255 15 6 5.9815 0.0991 4.9596 16 6 6.3204 -0.8066 6.1640 17 7 5.8898 -2.1704 5.8204 18 6 5.9965 -3.2686 6.6313 19 1 5.4943 -4.1871 6.3654 20 6 6.7503 -3.2015 7.7950 21 7 6.6322 -4.1397 8.7106 22 14 7.9322 -1.7798 8.0616 23 1 8.7043 -2.0053 9.3099 24 1 8.8666 -1.6905 6.9110 25 1 7.1652 -0.5134 8.1759 26 6 5.3296 -2.1611 4.4552 27 6 4.8847 -0.3688 2.7413 28 6 4.5178 1.1080 2.5488 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 4.2751 4.6342 1.4981 35 1 2.9686 5.5585 0.7189 36 1 2.6805 4.7535 2.2801 37 1 2.1267 1.1942 5.0164 38 1 3.8322 1.6563 5.2535 39 1 2.7748 -1.0702 4.3736 40 1 3.5662 -0.6806 5.9197 41 1 5.5970 1.0616 5.2967 42 1 6.8541 0.2334 4.3202 43 1 5.7863 -0.4613 7.0492 44 1 7.3947 -0.7924 6.3478 45 1 5.9666 -4.8377 8.6069 46 1 6.0920 -2.4463 3.7302 47 1 4.4737 -2.8330 4.3915 48 1 5.8761 -0.5536 2.3278 49 1 4.1544 -0.9946 2.2283 50 1 4.3969 1.3194 1.4864 51 1 5.3058 1.7375 2.9619 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035253717.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:44:05 Heat of formation + Delta-G solvation = 52.339497 kcal Electronic energy + Delta-G solvation = -32410.775321 eV Core-core repulsion = 28314.198152 eV Total energy + Delta-G solvation = -4096.577169 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -45.18087 -40.62023 -38.88618 -36.11664 -35.62678 -34.04838 -33.17858 -31.72774 -31.38619 -31.15634 -29.11058 -28.46970 -27.31515 -25.36335 -24.35367 -23.79820 -23.06099 -22.75211 -20.74776 -20.33929 -19.89827 -18.60234 -18.09393 -17.72468 -17.09917 -16.73492 -16.17471 -15.51253 -15.43901 -15.17370 -14.81973 -14.58532 -14.09672 -13.96222 -13.82110 -13.71931 -13.67164 -13.39498 -13.23893 -13.13283 -12.98806 -12.83028 -12.64651 -12.32532 -11.91684 -11.90094 -11.81948 -11.51353 -11.34304 -11.22886 -11.16442 -11.00100 -10.53939 -10.42986 -10.40083 -10.28426 -10.13898 -9.94760 -9.61962 -9.32942 -8.97110 -8.80068 -8.69640 -7.03358 -6.31561 -3.23012 0.98879 1.61378 2.15316 2.49667 2.88693 3.39509 3.47650 3.69980 3.70835 3.91588 4.27589 4.54299 4.59907 4.62289 4.68132 4.77097 4.83532 4.91393 4.93039 4.94087 4.96570 5.02665 5.08367 5.15859 5.19112 5.23143 5.34752 5.44716 5.47967 5.52732 5.56501 5.57495 5.62243 5.69151 5.71493 5.76537 5.85099 5.89060 5.92159 5.98771 6.16741 6.25940 6.28264 6.37240 6.46300 6.60086 6.72190 6.74667 7.12819 7.66790 7.86402 7.92158 8.32995 9.03737 9.55400 10.22732 11.19147 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019233 B = 0.002870 C = 0.002736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.477837 B = 9754.138541 C =10232.496807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.048 4.048 3 C 0.060 3.940 4 N -0.354 5.354 5 O 0.096 5.904 6 C 0.013 3.987 7 C -0.079 4.079 8 C -0.242 4.242 9 C 0.599 3.401 10 O -0.529 6.529 11 N -0.594 5.594 12 C 0.111 3.889 13 C -0.111 4.111 14 C -0.072 4.072 15 C -0.123 4.123 16 C 0.112 3.888 17 N -0.611 5.611 18 C -0.320 4.320 19 H 0.077 0.923 20 C -0.022 4.022 21 N -0.930 5.930 22 Si 1.073 2.927 23 H -0.303 1.303 24 H -0.299 1.299 25 H -0.287 1.287 26 C 0.147 3.853 27 C -0.116 4.116 28 C 0.110 3.890 29 H 0.057 0.943 30 H 0.068 0.932 31 H 0.062 0.938 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.095 0.905 35 H 0.091 0.909 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.074 0.926 39 H 0.064 0.936 40 H 0.089 0.911 41 H 0.068 0.932 42 H 0.066 0.934 43 H 0.044 0.956 44 H 0.026 0.974 45 H 0.261 0.739 46 H 0.023 0.977 47 H 0.043 0.957 48 H 0.078 0.922 49 H 0.066 0.934 50 H 0.077 0.923 51 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.283 16.963 -18.216 25.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.086 4.086 3 C -0.103 4.103 4 N -0.059 5.059 5 O 0.034 5.966 6 C -0.050 4.050 7 C -0.136 4.136 8 C -0.249 4.249 9 C 0.385 3.615 10 O -0.406 6.406 11 N -0.327 5.327 12 C -0.010 4.010 13 C -0.149 4.149 14 C -0.073 4.073 15 C -0.160 4.160 16 C -0.013 4.013 17 N -0.339 5.339 18 C -0.447 4.447 19 H 0.095 0.905 20 C -0.222 4.222 21 N -0.572 5.572 22 Si 0.907 3.093 23 H -0.231 1.231 24 H -0.228 1.228 25 H -0.214 1.214 26 C 0.021 3.979 27 C -0.155 4.155 28 C -0.013 4.013 29 H 0.076 0.924 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.106 0.894 33 H 0.106 0.894 34 H 0.114 0.886 35 H 0.109 0.891 36 H 0.112 0.888 37 H 0.111 0.889 38 H 0.092 0.908 39 H 0.083 0.917 40 H 0.107 0.893 41 H 0.087 0.913 42 H 0.085 0.915 43 H 0.062 0.938 44 H 0.043 0.957 45 H 0.071 0.929 46 H 0.041 0.959 47 H 0.061 0.939 48 H 0.097 0.903 49 H 0.085 0.915 50 H 0.096 0.904 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -6.753 17.406 -18.100 26.004 hybrid contribution -0.996 -0.834 -0.413 1.363 sum -7.749 16.573 -18.513 26.028 Atomic orbital electron populations 1.21729 0.93391 1.02702 1.02705 1.20018 0.96958 0.87369 1.04243 1.24760 1.00452 0.98678 0.86379 1.73615 1.16455 0.92555 1.23294 1.84539 1.62584 1.26933 1.22533 1.24596 0.98986 0.97672 0.83787 1.20469 1.02862 0.90849 0.99434 1.21868 1.12270 0.95429 0.95364 1.16923 0.83277 0.77415 0.83888 1.90817 1.28254 1.53685 1.67814 1.48076 1.12957 1.60353 1.11303 1.21837 1.03316 0.96549 0.79345 1.21648 0.95890 0.94509 1.02902 1.21112 0.94998 0.97738 0.93440 1.22659 0.97782 0.98045 0.97561 1.21985 0.97099 0.86065 0.96114 1.44852 1.72988 1.03831 1.12215 1.20163 1.30366 0.91016 1.03172 0.90536 1.25847 1.00649 1.03191 0.92474 1.70889 1.36895 1.15622 1.33756 0.83802 0.76365 0.75057 0.74069 1.23148 1.22843 1.21430 1.21532 0.96060 0.92497 0.87769 1.21737 1.02309 0.94886 0.96542 1.21808 0.85251 0.97334 0.96872 0.92395 0.91270 0.91856 0.89423 0.89350 0.88642 0.89056 0.88767 0.88868 0.90790 0.91743 0.89293 0.91305 0.91531 0.93800 0.95661 0.92884 0.95915 0.93895 0.90299 0.91508 0.90425 0.90709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.90 37.16 0.37 -0.95 16 2 C -0.05 -0.45 6.54 -27.88 -0.18 -0.63 16 3 C 0.06 0.66 6.80 -79.77 -0.54 0.12 16 4 N -0.35 -4.07 12.01 34.78 0.42 -3.66 16 5 O 0.10 0.98 11.06 18.64 0.21 1.19 16 6 C 0.01 0.12 7.55 -34.63 -0.26 -0.14 16 7 C -0.08 -0.43 10.33 36.00 0.37 -0.06 16 8 C -0.24 -2.67 4.18 -102.89 -0.43 -3.10 16 9 C 0.60 7.50 7.48 -12.53 -0.09 7.41 16 10 O -0.53 -8.38 16.51 5.27 0.09 -8.29 16 11 N -0.59 -6.66 2.96 -173.84 -0.51 -7.17 16 12 C 0.11 1.34 6.12 -3.63 -0.02 1.32 16 13 C -0.11 -1.55 4.87 -27.01 -0.13 -1.68 16 14 C -0.07 -1.02 0.55 -153.98 -0.08 -1.10 16 15 C -0.12 -1.82 4.91 -25.24 -0.12 -1.94 16 16 C 0.11 2.30 4.24 -2.96 -0.01 2.29 16 17 N -0.61 -14.32 3.31 -170.17 -0.56 -14.88 16 18 C -0.32 -9.00 10.56 -15.06 -0.16 -9.16 16 19 H 0.08 2.28 8.06 -52.48 -0.42 1.86 16 20 C -0.02 -0.66 5.50 -17.43 -0.10 -0.75 16 21 N -0.93 -29.15 13.70 55.49 0.76 -28.39 16 22 Si 1.07 26.59 24.53 -169.99 -4.17 22.42 16 23 H -0.30 -7.73 7.11 56.52 0.40 -7.33 16 24 H -0.30 -7.18 6.84 56.52 0.39 -6.80 16 25 H -0.29 -6.44 5.43 56.52 0.31 -6.13 16 26 C 0.15 2.75 6.16 -2.74 -0.02 2.74 16 27 C -0.12 -1.28 4.84 -26.99 -0.13 -1.41 16 28 C 0.11 1.05 6.07 -3.61 -0.02 1.03 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 36 H 0.09 0.57 8.11 -51.93 -0.42 0.15 16 37 H 0.09 1.21 6.99 -51.93 -0.36 0.84 16 38 H 0.07 0.83 6.55 -51.93 -0.34 0.49 16 39 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 40 H 0.09 1.45 7.82 -51.93 -0.41 1.05 16 41 H 0.07 0.88 6.17 -51.93 -0.32 0.56 16 42 H 0.07 0.90 7.98 -51.93 -0.41 0.49 16 43 H 0.04 0.95 6.79 -51.93 -0.35 0.60 16 44 H 0.03 0.57 3.81 -51.93 -0.20 0.37 16 45 H 0.26 8.10 8.73 -40.82 -0.36 7.74 16 46 H 0.02 0.43 8.00 -51.93 -0.42 0.01 16 47 H 0.04 0.82 8.03 -51.93 -0.42 0.41 16 48 H 0.08 0.82 8.09 -51.93 -0.42 0.40 16 49 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 50 H 0.08 0.69 6.29 -51.93 -0.33 0.37 16 51 H 0.07 0.64 7.62 -51.93 -0.40 0.24 16 LS Contribution 392.37 15.07 5.91 5.91 Total: -1.00 -34.09 392.37 -7.71 -41.81 By element: Atomic # 1 Polarization: 5.36 SS G_CDS: -8.28 Total: -2.91 kcal Atomic # 6 Polarization: -4.47 SS G_CDS: -1.57 Total: -6.04 kcal Atomic # 7 Polarization: -54.20 SS G_CDS: 0.10 Total: -54.10 kcal Atomic # 8 Polarization: -7.39 SS G_CDS: 0.29 Total: -7.10 kcal Atomic # 14 Polarization: 26.59 SS G_CDS: -4.17 Total: 22.42 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -34.09 -7.71 -41.81 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035253717.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.147 kcal (2) G-P(sol) polarization free energy of solvation -34.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.807 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds