Wall clock time and date at job start Wed Apr 1 2020 05:44:05
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 C 1.50695 * 109.47521 * 2 1
4 4 N 1.30015 * 127.33417 * 270.14877 * 3 2 1
5 5 O 1.20662 * 112.30069 * 180.27147 * 4 3 2
6 6 C 1.33495 * 113.15550 * 359.73031 * 5 4 3
7 7 C 1.50696 * 126.82605 * 179.97438 * 6 5 4
8 8 C 1.37360 * 106.34225 * 0.02562 * 6 5 4
9 9 C 1.47401 * 128.56369 * 179.97438 * 8 6 5
10 10 O 1.21607 * 119.99745 * 90.02367 * 9 8 6
11 11 N 1.34778 * 119.99752 * 270.02333 * 9 8 6
12 12 C 1.46928 * 120.55057 * 179.97438 * 11 9 8
13 13 C 1.53342 * 108.68473 * 125.63017 * 12 11 9
14 14 C 1.52110 * 109.44249 * 53.30481 * 13 12 11
15 15 C 1.54385 * 110.50739 * 64.08966 * 14 13 12
16 16 C 1.54457 * 102.87109 * 83.33374 * 15 14 13
17 17 N 1.47083 * 107.29725 * 21.50085 * 16 15 14
18 18 C 1.36935 * 125.62931 * 180.96847 * 17 16 15
19 19 H 1.08003 * 119.99937 * 168.95343 * 18 17 16
20 20 C 1.38811 * 119.99964 * 348.94815 * 18 17 16
21 21 N 1.31619 * 119.99929 * 165.65470 * 20 18 17
22 22 Si 1.86799 * 120.00069 * 345.65523 * 20 18 17
23 23 H 1.48500 * 109.47088 * 185.28736 * 22 20 18
24 24 H 1.48495 * 109.46844 * 305.28614 * 22 20 18
25 25 H 1.48497 * 109.46908 * 65.28631 * 22 20 18
26 26 C 1.47575 * 108.74515 * 1.23423 * 17 16 15
27 27 C 1.52103 * 111.59976 * 300.69054 * 14 13 12
28 28 C 1.46928 * 120.55101 * 359.97438 * 11 9 8
29 29 H 1.09000 * 109.46513 * 60.00112 * 1 2 3
30 30 H 1.09000 * 109.47249 * 179.97438 * 1 2 3
31 31 H 1.08999 * 109.46916 * 300.00369 * 1 2 3
32 32 H 1.08999 * 109.46916 * 239.99630 * 2 1 3
33 33 H 1.09000 * 109.46513 * 119.99888 * 2 1 3
34 34 H 1.09004 * 109.47286 * 270.00055 * 7 6 5
35 35 H 1.09005 * 109.47704 * 30.00372 * 7 6 5
36 36 H 1.09002 * 109.46840 * 150.00183 * 7 6 5
37 37 H 1.08999 * 109.60337 * 5.87416 * 12 11 9
38 38 H 1.09002 * 109.60479 * 245.38772 * 12 11 9
39 39 H 1.08999 * 109.47461 * 293.31423 * 13 12 11
40 40 H 1.09004 * 109.48038 * 173.29557 * 13 12 11
41 41 H 1.08995 * 110.73888 * 324.98680 * 15 14 13
42 42 H 1.09004 * 110.73381 * 201.67143 * 15 14 13
43 43 H 1.09003 * 109.87682 * 262.08138 * 16 15 14
44 44 H 1.09002 * 109.88538 * 140.92812 * 16 15 14
45 45 H 0.97002 * 120.00420 * 354.93210 * 21 20 18
46 46 H 1.09003 * 110.37719 * 95.25320 * 26 17 16
47 47 H 1.08995 * 110.38134 * 217.60924 * 26 17 16
48 48 H 1.08994 * 109.47603 * 179.28981 * 27 14 13
49 49 H 1.09001 * 109.48068 * 299.31611 * 27 14 13
50 50 H 1.08992 * 109.60702 * 354.12479 * 28 11 9
51 51 H 1.08995 * 109.60156 * 114.60997 * 28 11 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0325 1.4207 0.0000
4 7 2.2928 2.1650 -1.0338
5 8 2.6871 3.2616 -0.7208
6 6 2.7520 3.4387 0.6008
7 6 3.2000 4.6822 1.3245
8 6 2.3303 2.2617 1.1696
9 6 2.2109 1.9231 2.5992
10 8 1.1703 2.1388 3.1903
11 7 3.2551 1.3744 3.2513
12 6 3.1496 1.0326 4.6763
13 6 3.5243 -0.4434 4.8566
14 6 4.8841 -0.7012 4.2255
15 6 5.9815 0.0991 4.9596
16 6 6.3204 -0.8066 6.1640
17 7 5.8898 -2.1704 5.8204
18 6 5.9965 -3.2686 6.6313
19 1 5.4943 -4.1871 6.3654
20 6 6.7503 -3.2015 7.7950
21 7 6.6322 -4.1397 8.7106
22 14 7.9322 -1.7798 8.0616
23 1 8.7043 -2.0053 9.3099
24 1 8.8666 -1.6905 6.9110
25 1 7.1652 -0.5134 8.1759
26 6 5.3296 -2.1611 4.4552
27 6 4.8847 -0.3688 2.7413
28 6 4.5178 1.1080 2.5488
29 1 -0.3632 0.5138 -0.8900
30 1 -0.3634 -1.0277 -0.0005
31 1 -0.3633 0.5139 0.8900
32 1 1.8933 -0.5139 -0.8900
33 1 1.8933 -0.5138 0.8900
34 1 4.2751 4.6342 1.4981
35 1 2.9686 5.5585 0.7189
36 1 2.6805 4.7535 2.2801
37 1 2.1267 1.1942 5.0164
38 1 3.8322 1.6563 5.2535
39 1 2.7748 -1.0702 4.3736
40 1 3.5662 -0.6806 5.9197
41 1 5.5970 1.0616 5.2967
42 1 6.8541 0.2334 4.3202
43 1 5.7863 -0.4613 7.0492
44 1 7.3947 -0.7924 6.3478
45 1 5.9666 -4.8377 8.6069
46 1 6.0920 -2.4463 3.7302
47 1 4.4737 -2.8330 4.3915
48 1 5.8761 -0.5536 2.3278
49 1 4.1544 -0.9946 2.2283
50 1 4.3969 1.3194 1.4864
51 1 5.3058 1.7375 2.9619
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001035253717.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:44:05
Heat of formation + Delta-G solvation = 52.339497 kcal
Electronic energy + Delta-G solvation = -32410.775321 eV
Core-core repulsion = 28314.198152 eV
Total energy + Delta-G solvation = -4096.577169 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 0.94 seconds
Orbital eigenvalues (eV)
-45.18087 -40.62023 -38.88618 -36.11664 -35.62678 -34.04838 -33.17858 -31.72774
-31.38619 -31.15634 -29.11058 -28.46970 -27.31515 -25.36335 -24.35367 -23.79820
-23.06099 -22.75211 -20.74776 -20.33929 -19.89827 -18.60234 -18.09393 -17.72468
-17.09917 -16.73492 -16.17471 -15.51253 -15.43901 -15.17370 -14.81973 -14.58532
-14.09672 -13.96222 -13.82110 -13.71931 -13.67164 -13.39498 -13.23893 -13.13283
-12.98806 -12.83028 -12.64651 -12.32532 -11.91684 -11.90094 -11.81948 -11.51353
-11.34304 -11.22886 -11.16442 -11.00100 -10.53939 -10.42986 -10.40083 -10.28426
-10.13898 -9.94760 -9.61962 -9.32942 -8.97110 -8.80068 -8.69640 -7.03358
-6.31561 -3.23012 0.98879 1.61378 2.15316 2.49667 2.88693 3.39509
3.47650 3.69980 3.70835 3.91588 4.27589 4.54299 4.59907 4.62289
4.68132 4.77097 4.83532 4.91393 4.93039 4.94087 4.96570 5.02665
5.08367 5.15859 5.19112 5.23143 5.34752 5.44716 5.47967 5.52732
5.56501 5.57495 5.62243 5.69151 5.71493 5.76537 5.85099 5.89060
5.92159 5.98771 6.16741 6.25940 6.28264 6.37240 6.46300 6.60086
6.72190 6.74667 7.12819 7.66790 7.86402 7.92158 8.32995 9.03737
9.55400 10.22732 11.19147
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.019233 B = 0.002870 C = 0.002736
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1455.477837 B = 9754.138541 C =10232.496807
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.147 4.147
2 C -0.048 4.048
3 C 0.060 3.940
4 N -0.354 5.354
5 O 0.096 5.904
6 C 0.013 3.987
7 C -0.079 4.079
8 C -0.242 4.242
9 C 0.599 3.401
10 O -0.529 6.529
11 N -0.594 5.594
12 C 0.111 3.889
13 C -0.111 4.111
14 C -0.072 4.072
15 C -0.123 4.123
16 C 0.112 3.888
17 N -0.611 5.611
18 C -0.320 4.320
19 H 0.077 0.923
20 C -0.022 4.022
21 N -0.930 5.930
22 Si 1.073 2.927
23 H -0.303 1.303
24 H -0.299 1.299
25 H -0.287 1.287
26 C 0.147 3.853
27 C -0.116 4.116
28 C 0.110 3.890
29 H 0.057 0.943
30 H 0.068 0.932
31 H 0.062 0.938
32 H 0.087 0.913
33 H 0.088 0.912
34 H 0.095 0.905
35 H 0.091 0.909
36 H 0.094 0.906
37 H 0.093 0.907
38 H 0.074 0.926
39 H 0.064 0.936
40 H 0.089 0.911
41 H 0.068 0.932
42 H 0.066 0.934
43 H 0.044 0.956
44 H 0.026 0.974
45 H 0.261 0.739
46 H 0.023 0.977
47 H 0.043 0.957
48 H 0.078 0.922
49 H 0.066 0.934
50 H 0.077 0.923
51 H 0.075 0.925
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.283 16.963 -18.216 25.935
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.205 4.205
2 C -0.086 4.086
3 C -0.103 4.103
4 N -0.059 5.059
5 O 0.034 5.966
6 C -0.050 4.050
7 C -0.136 4.136
8 C -0.249 4.249
9 C 0.385 3.615
10 O -0.406 6.406
11 N -0.327 5.327
12 C -0.010 4.010
13 C -0.149 4.149
14 C -0.073 4.073
15 C -0.160 4.160
16 C -0.013 4.013
17 N -0.339 5.339
18 C -0.447 4.447
19 H 0.095 0.905
20 C -0.222 4.222
21 N -0.572 5.572
22 Si 0.907 3.093
23 H -0.231 1.231
24 H -0.228 1.228
25 H -0.214 1.214
26 C 0.021 3.979
27 C -0.155 4.155
28 C -0.013 4.013
29 H 0.076 0.924
30 H 0.087 0.913
31 H 0.081 0.919
32 H 0.106 0.894
33 H 0.106 0.894
34 H 0.114 0.886
35 H 0.109 0.891
36 H 0.112 0.888
37 H 0.111 0.889
38 H 0.092 0.908
39 H 0.083 0.917
40 H 0.107 0.893
41 H 0.087 0.913
42 H 0.085 0.915
43 H 0.062 0.938
44 H 0.043 0.957
45 H 0.071 0.929
46 H 0.041 0.959
47 H 0.061 0.939
48 H 0.097 0.903
49 H 0.085 0.915
50 H 0.096 0.904
51 H 0.093 0.907
Dipole moment (debyes) X Y Z Total
from point charges -6.753 17.406 -18.100 26.004
hybrid contribution -0.996 -0.834 -0.413 1.363
sum -7.749 16.573 -18.513 26.028
Atomic orbital electron populations
1.21729 0.93391 1.02702 1.02705 1.20018 0.96958 0.87369 1.04243
1.24760 1.00452 0.98678 0.86379 1.73615 1.16455 0.92555 1.23294
1.84539 1.62584 1.26933 1.22533 1.24596 0.98986 0.97672 0.83787
1.20469 1.02862 0.90849 0.99434 1.21868 1.12270 0.95429 0.95364
1.16923 0.83277 0.77415 0.83888 1.90817 1.28254 1.53685 1.67814
1.48076 1.12957 1.60353 1.11303 1.21837 1.03316 0.96549 0.79345
1.21648 0.95890 0.94509 1.02902 1.21112 0.94998 0.97738 0.93440
1.22659 0.97782 0.98045 0.97561 1.21985 0.97099 0.86065 0.96114
1.44852 1.72988 1.03831 1.12215 1.20163 1.30366 0.91016 1.03172
0.90536 1.25847 1.00649 1.03191 0.92474 1.70889 1.36895 1.15622
1.33756 0.83802 0.76365 0.75057 0.74069 1.23148 1.22843 1.21430
1.21532 0.96060 0.92497 0.87769 1.21737 1.02309 0.94886 0.96542
1.21808 0.85251 0.97334 0.96872 0.92395 0.91270 0.91856 0.89423
0.89350 0.88642 0.89056 0.88767 0.88868 0.90790 0.91743 0.89293
0.91305 0.91531 0.93800 0.95661 0.92884 0.95915 0.93895 0.90299
0.91508 0.90425 0.90709
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.32 9.90 37.16 0.37 -0.95 16
2 C -0.05 -0.45 6.54 -27.88 -0.18 -0.63 16
3 C 0.06 0.66 6.80 -79.77 -0.54 0.12 16
4 N -0.35 -4.07 12.01 34.78 0.42 -3.66 16
5 O 0.10 0.98 11.06 18.64 0.21 1.19 16
6 C 0.01 0.12 7.55 -34.63 -0.26 -0.14 16
7 C -0.08 -0.43 10.33 36.00 0.37 -0.06 16
8 C -0.24 -2.67 4.18 -102.89 -0.43 -3.10 16
9 C 0.60 7.50 7.48 -12.53 -0.09 7.41 16
10 O -0.53 -8.38 16.51 5.27 0.09 -8.29 16
11 N -0.59 -6.66 2.96 -173.84 -0.51 -7.17 16
12 C 0.11 1.34 6.12 -3.63 -0.02 1.32 16
13 C -0.11 -1.55 4.87 -27.01 -0.13 -1.68 16
14 C -0.07 -1.02 0.55 -153.98 -0.08 -1.10 16
15 C -0.12 -1.82 4.91 -25.24 -0.12 -1.94 16
16 C 0.11 2.30 4.24 -2.96 -0.01 2.29 16
17 N -0.61 -14.32 3.31 -170.17 -0.56 -14.88 16
18 C -0.32 -9.00 10.56 -15.06 -0.16 -9.16 16
19 H 0.08 2.28 8.06 -52.48 -0.42 1.86 16
20 C -0.02 -0.66 5.50 -17.43 -0.10 -0.75 16
21 N -0.93 -29.15 13.70 55.49 0.76 -28.39 16
22 Si 1.07 26.59 24.53 -169.99 -4.17 22.42 16
23 H -0.30 -7.73 7.11 56.52 0.40 -7.33 16
24 H -0.30 -7.18 6.84 56.52 0.39 -6.80 16
25 H -0.29 -6.44 5.43 56.52 0.31 -6.13 16
26 C 0.15 2.75 6.16 -2.74 -0.02 2.74 16
27 C -0.12 -1.28 4.84 -26.99 -0.13 -1.41 16
28 C 0.11 1.05 6.07 -3.61 -0.02 1.03 16
29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16
30 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16
31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16
32 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16
33 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16
34 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16
35 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16
36 H 0.09 0.57 8.11 -51.93 -0.42 0.15 16
37 H 0.09 1.21 6.99 -51.93 -0.36 0.84 16
38 H 0.07 0.83 6.55 -51.93 -0.34 0.49 16
39 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16
40 H 0.09 1.45 7.82 -51.93 -0.41 1.05 16
41 H 0.07 0.88 6.17 -51.93 -0.32 0.56 16
42 H 0.07 0.90 7.98 -51.93 -0.41 0.49 16
43 H 0.04 0.95 6.79 -51.93 -0.35 0.60 16
44 H 0.03 0.57 3.81 -51.93 -0.20 0.37 16
45 H 0.26 8.10 8.73 -40.82 -0.36 7.74 16
46 H 0.02 0.43 8.00 -51.93 -0.42 0.01 16
47 H 0.04 0.82 8.03 -51.93 -0.42 0.41 16
48 H 0.08 0.82 8.09 -51.93 -0.42 0.40 16
49 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16
50 H 0.08 0.69 6.29 -51.93 -0.33 0.37 16
51 H 0.07 0.64 7.62 -51.93 -0.40 0.24 16
LS Contribution 392.37 15.07 5.91 5.91
Total: -1.00 -34.09 392.37 -7.71 -41.81
By element:
Atomic # 1 Polarization: 5.36 SS G_CDS: -8.28 Total: -2.91 kcal
Atomic # 6 Polarization: -4.47 SS G_CDS: -1.57 Total: -6.04 kcal
Atomic # 7 Polarization: -54.20 SS G_CDS: 0.10 Total: -54.10 kcal
Atomic # 8 Polarization: -7.39 SS G_CDS: 0.29 Total: -7.10 kcal
Atomic # 14 Polarization: 26.59 SS G_CDS: -4.17 Total: 22.42 kcal
Total LS contribution 5.91 Total: 5.91 kcal
Total: -34.09 -7.71 -41.81 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001035253717.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 94.147 kcal
(2) G-P(sol) polarization free energy of solvation -34.095 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.052 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.712 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.807 kcal
(6) G-S(sol) free energy of system = (1) + (5) 52.339 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.95 seconds