Wall clock time and date at job start Wed Apr 1 2020 05:44:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50695 * 109.47521 * 2 1 4 4 N 1.30015 * 127.33417 * 270.14877 * 3 2 1 5 5 O 1.20662 * 112.30069 * 180.27147 * 4 3 2 6 6 C 1.33495 * 113.15550 * 359.73031 * 5 4 3 7 7 C 1.50696 * 126.82605 * 179.97438 * 6 5 4 8 8 C 1.37360 * 106.34225 * 0.02562 * 6 5 4 9 9 C 1.47401 * 128.56369 * 179.97438 * 8 6 5 10 10 O 1.21607 * 119.99745 * 90.02367 * 9 8 6 11 11 N 1.34778 * 119.99752 * 270.02333 * 9 8 6 12 12 C 1.46928 * 120.55057 * 179.97438 * 11 9 8 13 13 C 1.53342 * 108.68473 * 125.63017 * 12 11 9 14 14 C 1.52110 * 109.44249 * 53.30481 * 13 12 11 15 15 C 1.54385 * 110.50739 * 64.08966 * 14 13 12 16 16 C 1.54457 * 102.87109 * 83.33374 * 15 14 13 17 17 N 1.47083 * 107.29725 * 21.50085 * 16 15 14 18 18 C 1.36935 * 125.62931 * 180.96847 * 17 16 15 19 19 H 1.08003 * 119.99937 * 168.95343 * 18 17 16 20 20 C 1.38811 * 119.99964 * 348.94815 * 18 17 16 21 21 N 1.31619 * 119.99929 * 165.65470 * 20 18 17 22 22 Si 1.86799 * 120.00069 * 345.65523 * 20 18 17 23 23 H 1.48500 * 109.47088 * 185.28736 * 22 20 18 24 24 H 1.48495 * 109.46844 * 305.28614 * 22 20 18 25 25 H 1.48497 * 109.46908 * 65.28631 * 22 20 18 26 26 C 1.47575 * 108.74515 * 1.23423 * 17 16 15 27 27 C 1.52103 * 111.59976 * 300.69054 * 14 13 12 28 28 C 1.46928 * 120.55101 * 359.97438 * 11 9 8 29 29 H 1.09000 * 109.46513 * 60.00112 * 1 2 3 30 30 H 1.09000 * 109.47249 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46916 * 300.00369 * 1 2 3 32 32 H 1.08999 * 109.46916 * 239.99630 * 2 1 3 33 33 H 1.09000 * 109.46513 * 119.99888 * 2 1 3 34 34 H 1.09004 * 109.47286 * 270.00055 * 7 6 5 35 35 H 1.09005 * 109.47704 * 30.00372 * 7 6 5 36 36 H 1.09002 * 109.46840 * 150.00183 * 7 6 5 37 37 H 1.08999 * 109.60337 * 5.87416 * 12 11 9 38 38 H 1.09002 * 109.60479 * 245.38772 * 12 11 9 39 39 H 1.08999 * 109.47461 * 293.31423 * 13 12 11 40 40 H 1.09004 * 109.48038 * 173.29557 * 13 12 11 41 41 H 1.08995 * 110.73888 * 324.98680 * 15 14 13 42 42 H 1.09004 * 110.73381 * 201.67143 * 15 14 13 43 43 H 1.09003 * 109.87682 * 262.08138 * 16 15 14 44 44 H 1.09002 * 109.88538 * 140.92812 * 16 15 14 45 45 H 0.97002 * 120.00420 * 354.93210 * 21 20 18 46 46 H 1.09003 * 110.37719 * 95.25320 * 26 17 16 47 47 H 1.08995 * 110.38134 * 217.60924 * 26 17 16 48 48 H 1.08994 * 109.47603 * 179.28981 * 27 14 13 49 49 H 1.09001 * 109.48068 * 299.31611 * 27 14 13 50 50 H 1.08992 * 109.60702 * 354.12479 * 28 11 9 51 51 H 1.08995 * 109.60156 * 114.60997 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0325 1.4207 0.0000 4 7 2.2928 2.1650 -1.0338 5 8 2.6871 3.2616 -0.7208 6 6 2.7520 3.4387 0.6008 7 6 3.2000 4.6822 1.3245 8 6 2.3303 2.2617 1.1696 9 6 2.2109 1.9231 2.5992 10 8 1.1703 2.1388 3.1903 11 7 3.2551 1.3744 3.2513 12 6 3.1496 1.0326 4.6763 13 6 3.5243 -0.4434 4.8566 14 6 4.8841 -0.7012 4.2255 15 6 5.9815 0.0991 4.9596 16 6 6.3204 -0.8066 6.1640 17 7 5.8898 -2.1704 5.8204 18 6 5.9965 -3.2686 6.6313 19 1 5.4943 -4.1871 6.3654 20 6 6.7503 -3.2015 7.7950 21 7 6.6322 -4.1397 8.7106 22 14 7.9322 -1.7798 8.0616 23 1 8.7043 -2.0053 9.3099 24 1 8.8666 -1.6905 6.9110 25 1 7.1652 -0.5134 8.1759 26 6 5.3296 -2.1611 4.4552 27 6 4.8847 -0.3688 2.7413 28 6 4.5178 1.1080 2.5488 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 4.2751 4.6342 1.4981 35 1 2.9686 5.5585 0.7189 36 1 2.6805 4.7535 2.2801 37 1 2.1267 1.1942 5.0164 38 1 3.8322 1.6563 5.2535 39 1 2.7748 -1.0702 4.3736 40 1 3.5662 -0.6806 5.9197 41 1 5.5970 1.0616 5.2967 42 1 6.8541 0.2334 4.3202 43 1 5.7863 -0.4613 7.0492 44 1 7.3947 -0.7924 6.3478 45 1 5.9666 -4.8377 8.6069 46 1 6.0920 -2.4463 3.7302 47 1 4.4737 -2.8330 4.3915 48 1 5.8761 -0.5536 2.3278 49 1 4.1544 -0.9946 2.2283 50 1 4.3969 1.3194 1.4864 51 1 5.3058 1.7375 2.9619 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035253717.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:44:04 Heat of formation + Delta-G solvation = 30.560913 kcal Electronic energy + Delta-G solvation = -32411.719712 eV Core-core repulsion = 28314.198152 eV Total energy + Delta-G solvation = -4097.521559 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -45.95486 -41.67433 -40.08628 -37.41585 -36.39107 -35.03781 -34.59421 -33.03968 -32.49225 -32.13887 -30.63738 -29.20592 -28.53355 -26.32031 -25.42094 -25.07465 -24.20347 -23.79641 -22.30467 -21.38025 -20.74144 -19.91864 -19.25017 -18.81873 -18.33250 -17.66574 -17.05098 -17.00239 -16.77712 -16.23495 -15.66783 -15.52650 -15.32654 -15.09395 -15.06110 -14.92026 -14.59947 -14.48389 -14.14929 -14.04644 -14.00324 -13.74280 -13.58196 -13.49934 -13.22022 -13.03161 -12.89583 -12.63632 -12.59430 -12.53011 -12.23613 -11.91930 -11.89560 -11.72756 -11.60248 -11.44124 -11.36700 -11.25907 -10.96662 -10.93054 -10.60583 -10.35966 -9.74587 -9.04514 -8.64104 -5.45464 0.28411 0.81805 1.23281 1.40940 1.51294 1.71906 1.73766 2.10662 2.57077 2.95623 3.13818 3.21869 3.33260 3.47850 3.52477 3.70031 3.81144 3.89787 4.03209 4.06665 4.10159 4.19896 4.22574 4.27919 4.30848 4.36594 4.43171 4.55123 4.60753 4.63188 4.67428 4.68681 4.74457 4.75676 4.79859 4.86054 4.86813 4.89816 4.97178 5.02697 5.06422 5.08555 5.10213 5.16962 5.25322 5.34487 5.40333 5.51128 5.58816 6.12010 6.22988 6.84941 6.94010 7.18184 7.47679 8.12494 8.88903 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019233 B = 0.002870 C = 0.002736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.477837 B = 9754.138541 C =10232.496807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.049 4.049 3 C 0.055 3.945 4 N -0.372 5.372 5 O 0.095 5.905 6 C 0.033 3.967 7 C -0.080 4.080 8 C -0.268 4.268 9 C 0.605 3.395 10 O -0.570 6.570 11 N -0.589 5.589 12 C 0.120 3.880 13 C -0.106 4.106 14 C -0.057 4.057 15 C -0.110 4.110 16 C 0.100 3.900 17 N -0.632 5.632 18 C -0.307 4.307 19 H 0.040 0.960 20 C -0.084 4.084 21 N -0.969 5.969 22 Si 1.113 2.887 23 H -0.317 1.317 24 H -0.283 1.283 25 H -0.248 1.248 26 C 0.141 3.859 27 C -0.110 4.110 28 C 0.113 3.887 29 H 0.057 0.943 30 H 0.083 0.917 31 H 0.042 0.958 32 H 0.100 0.900 33 H 0.086 0.914 34 H 0.121 0.879 35 H 0.112 0.888 36 H 0.089 0.911 37 H 0.081 0.919 38 H 0.093 0.907 39 H 0.055 0.945 40 H 0.060 0.940 41 H 0.099 0.901 42 H 0.093 0.907 43 H 0.031 0.969 44 H 0.021 0.979 45 H 0.245 0.755 46 H 0.031 0.969 47 H 0.025 0.975 48 H 0.096 0.904 49 H 0.065 0.935 50 H 0.090 0.910 51 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.986 20.662 -20.543 29.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.087 4.087 3 C -0.108 4.108 4 N -0.079 5.079 5 O 0.034 5.966 6 C -0.030 4.030 7 C -0.137 4.137 8 C -0.275 4.275 9 C 0.392 3.608 10 O -0.449 6.449 11 N -0.320 5.320 12 C -0.002 4.002 13 C -0.145 4.145 14 C -0.058 4.058 15 C -0.147 4.147 16 C -0.024 4.024 17 N -0.359 5.359 18 C -0.436 4.436 19 H 0.058 0.942 20 C -0.275 4.275 21 N -0.614 5.614 22 Si 0.941 3.059 23 H -0.247 1.247 24 H -0.211 1.211 25 H -0.173 1.173 26 C 0.016 3.984 27 C -0.149 4.149 28 C -0.008 4.008 29 H 0.076 0.924 30 H 0.102 0.898 31 H 0.062 0.938 32 H 0.118 0.882 33 H 0.105 0.895 34 H 0.139 0.861 35 H 0.130 0.870 36 H 0.108 0.892 37 H 0.099 0.901 38 H 0.111 0.889 39 H 0.074 0.926 40 H 0.079 0.921 41 H 0.118 0.882 42 H 0.111 0.889 43 H 0.049 0.951 44 H 0.039 0.961 45 H 0.054 0.946 46 H 0.049 0.951 47 H 0.044 0.956 48 H 0.115 0.885 49 H 0.084 0.916 50 H 0.108 0.892 51 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -5.462 21.133 -20.496 29.942 hybrid contribution -1.497 -2.080 0.242 2.574 sum -6.960 19.053 -20.254 28.665 Atomic orbital electron populations 1.21687 0.93390 1.03363 1.01648 1.20082 0.96928 0.86953 1.04745 1.24989 1.00192 0.99188 0.86386 1.73611 1.17434 0.93087 1.23729 1.84525 1.62437 1.26510 1.23111 1.25208 0.96676 0.97961 0.83189 1.20715 1.04216 0.89819 0.98979 1.21746 1.14694 0.96599 0.94483 1.17046 0.82696 0.76751 0.84263 1.90800 1.29819 1.55479 1.68810 1.48088 1.13425 1.59595 1.10870 1.21685 1.03143 0.95087 0.80278 1.21539 0.95919 0.96027 1.00970 1.20991 0.94627 0.94218 0.95950 1.22692 0.98809 0.97857 0.95346 1.22161 0.96374 0.85325 0.98565 1.44926 1.73329 1.03958 1.13704 1.20044 1.28445 0.91515 1.03594 0.94205 1.27191 1.02566 1.05221 0.92571 1.70999 1.37944 1.16878 1.35532 0.83348 0.74772 0.73978 0.73763 1.24717 1.21097 1.17304 1.21745 0.95368 0.95718 0.85574 1.21705 1.03506 0.96115 0.93554 1.21953 0.84774 0.96373 0.97741 0.92408 0.89798 0.93830 0.88169 0.89511 0.86075 0.86983 0.89223 0.90074 0.88854 0.92645 0.92138 0.88241 0.88876 0.95084 0.96126 0.94576 0.95134 0.95610 0.88525 0.91601 0.89173 0.88130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 9.90 71.98 0.71 -1.76 16 2 C -0.05 -0.85 6.54 29.85 0.20 -0.66 16 3 C 0.05 1.11 6.80 45.15 0.31 1.42 16 4 N -0.37 -7.84 12.01 -44.78 -0.54 -8.37 16 5 O 0.09 1.70 11.06 76.96 0.85 2.55 16 6 C 0.03 0.50 7.55 25.48 0.19 0.70 16 7 C -0.08 -0.56 10.33 71.23 0.74 0.18 16 8 C -0.27 -5.29 4.18 -18.74 -0.08 -5.37 16 9 C 0.61 13.95 7.48 86.66 0.65 14.60 16 10 O -0.57 -17.61 16.51 -4.05 -0.07 -17.67 16 11 N -0.59 -11.35 2.96 -822.15 -2.43 -13.78 16 12 C 0.12 2.60 6.12 86.41 0.53 3.13 16 13 C -0.11 -2.83 4.87 30.42 0.15 -2.68 16 14 C -0.06 -1.45 0.55 -51.84 -0.03 -1.48 16 15 C -0.11 -2.75 4.91 31.56 0.16 -2.59 16 16 C 0.10 3.85 4.24 86.76 0.37 4.21 16 17 N -0.63 -29.42 3.31 -692.29 -2.29 -31.71 16 18 C -0.31 -17.85 10.56 84.03 0.89 -16.97 16 19 H 0.04 2.54 8.06 -2.91 -0.02 2.51 16 20 C -0.08 -5.01 5.50 84.86 0.47 -4.55 16 21 N -0.97 -63.29 13.70 21.65 0.30 -63.00 16 22 Si 1.11 53.43 24.53 68.60 1.68 55.12 16 23 H -0.32 -15.89 7.11 99.48 0.71 -15.18 16 24 H -0.28 -12.71 6.84 99.48 0.68 -12.03 16 25 H -0.25 -10.29 5.43 99.48 0.54 -9.75 16 26 C 0.14 5.14 6.16 86.63 0.53 5.67 16 27 C -0.11 -1.98 4.84 30.43 0.15 -1.83 16 28 C 0.11 1.62 6.07 86.43 0.52 2.14 16 29 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.12 0.29 8.14 -2.38 -0.02 0.28 16 35 H 0.11 0.35 8.14 -2.38 -0.02 0.33 16 36 H 0.09 0.78 8.11 -2.39 -0.02 0.76 16 37 H 0.08 2.02 6.99 -2.39 -0.02 2.00 16 38 H 0.09 1.71 6.55 -2.39 -0.02 1.69 16 39 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.06 1.97 7.82 -2.38 -0.02 1.95 16 41 H 0.10 1.95 6.17 -2.39 -0.01 1.94 16 42 H 0.09 1.93 7.98 -2.38 -0.02 1.92 16 43 H 0.03 1.28 6.79 -2.39 -0.02 1.26 16 44 H 0.02 0.86 3.81 -2.39 -0.01 0.85 16 45 H 0.25 16.16 8.73 -92.71 -0.81 15.35 16 46 H 0.03 1.09 8.00 -2.39 -0.02 1.07 16 47 H 0.03 1.01 8.03 -2.39 -0.02 0.99 16 48 H 0.10 1.49 8.09 -2.39 -0.02 1.47 16 49 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 50 H 0.09 1.18 6.29 -2.39 -0.02 1.16 16 51 H 0.10 1.03 7.62 -2.39 -0.02 1.01 16 Total: -1.00 -79.08 392.37 4.64 -74.44 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: 0.70 Total: 8.26 kcal Atomic # 6 Polarization: -12.27 SS G_CDS: 6.44 Total: -5.83 kcal Atomic # 7 Polarization: -111.89 SS G_CDS: -4.97 Total: -116.86 kcal Atomic # 8 Polarization: -15.91 SS G_CDS: 0.78 Total: -15.12 kcal Atomic # 14 Polarization: 53.43 SS G_CDS: 1.68 Total: 55.12 kcal Total: -79.08 4.64 -74.44 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035253717.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.999 kcal (2) G-P(sol) polarization free energy of solvation -79.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.438 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds