Wall clock time and date at job start Wed Apr 1 2020 05:36:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50696 * 109.47410 * 2 1 4 4 O 1.33503 * 126.82910 * 270.17139 * 3 2 1 5 5 N 1.20656 * 113.15531 * 180.30406 * 4 3 2 6 6 C 1.30012 * 112.30178 * 359.71837 * 5 4 3 7 7 C 1.50697 * 127.33286 * 179.97438 * 6 5 4 8 8 C 1.37359 * 126.83064 * 89.99526 * 3 2 1 9 9 C 1.47401 * 128.56491 * 0.02562 * 8 3 2 10 10 O 1.21607 * 119.99745 * 269.69984 * 9 8 3 11 11 N 1.34778 * 119.99752 * 89.69950 * 9 8 3 12 12 C 1.46928 * 120.55057 * 179.97438 * 11 9 8 13 13 C 1.53342 * 108.68473 * 125.63017 * 12 11 9 14 14 C 1.52110 * 109.44249 * 53.30481 * 13 12 11 15 15 C 1.54385 * 110.50739 * 64.08966 * 14 13 12 16 16 C 1.54457 * 102.87109 * 83.33374 * 15 14 13 17 17 N 1.47083 * 107.29725 * 21.50085 * 16 15 14 18 18 C 1.36935 * 125.62931 * 180.96847 * 17 16 15 19 19 H 1.08003 * 119.99937 * 168.95343 * 18 17 16 20 20 C 1.38811 * 119.99964 * 348.94815 * 18 17 16 21 21 N 1.31619 * 119.99929 * 165.65470 * 20 18 17 22 22 Si 1.86799 * 120.00069 * 345.65523 * 20 18 17 23 23 H 1.48500 * 109.47088 * 185.28736 * 22 20 18 24 24 H 1.48495 * 109.46844 * 305.28614 * 22 20 18 25 25 H 1.48497 * 109.46908 * 65.28631 * 22 20 18 26 26 C 1.47575 * 108.74515 * 1.23423 * 17 16 15 27 27 C 1.52103 * 111.59976 * 300.69054 * 14 13 12 28 28 C 1.46928 * 120.55101 * 359.97438 * 11 9 8 29 29 H 1.08996 * 109.47383 * 60.00327 * 1 2 3 30 30 H 1.09003 * 109.47339 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47339 * 300.00039 * 1 2 3 32 32 H 1.09003 * 109.47339 * 239.99960 * 2 1 3 33 33 H 1.09005 * 109.47261 * 119.99892 * 2 1 3 34 34 H 1.09001 * 109.47100 * 270.04187 * 7 6 5 35 35 H 1.09001 * 109.47498 * 30.04219 * 7 6 5 36 36 H 1.09002 * 109.47101 * 150.04358 * 7 6 5 37 37 H 1.08999 * 109.60337 * 5.87416 * 12 11 9 38 38 H 1.09002 * 109.60479 * 245.38772 * 12 11 9 39 39 H 1.08999 * 109.47461 * 293.31423 * 13 12 11 40 40 H 1.09004 * 109.48038 * 173.29557 * 13 12 11 41 41 H 1.08995 * 110.73888 * 324.98680 * 15 14 13 42 42 H 1.09004 * 110.73381 * 201.67143 * 15 14 13 43 43 H 1.09003 * 109.87682 * 262.08138 * 16 15 14 44 44 H 1.09002 * 109.88538 * 140.92812 * 16 15 14 45 45 H 0.97002 * 120.00420 * 354.93210 * 21 20 18 46 46 H 1.09003 * 110.37719 * 95.25320 * 26 17 16 47 47 H 1.08995 * 110.38134 * 217.60924 * 26 17 16 48 48 H 1.08994 * 109.47603 * 179.28981 * 27 14 13 49 49 H 1.09001 * 109.48068 * 299.31611 * 27 14 13 50 50 H 1.08992 * 109.60702 * 354.12479 * 28 11 9 51 51 H 1.08995 * 109.60156 * 114.60997 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 2.2961 2.1763 -1.0686 5 7 2.6933 3.2793 -0.7834 6 6 2.7610 3.4623 0.5020 7 6 3.2098 4.7055 1.2258 8 6 2.3067 2.1971 1.0994 9 6 2.1832 1.8465 2.5258 10 8 1.1410 2.0577 3.1158 11 7 3.2253 1.2920 3.1761 12 6 3.1157 0.9383 4.5980 13 6 3.4895 -0.5392 4.7669 14 6 4.8509 -0.7923 4.1375 15 6 5.9466 0.0014 4.8812 16 6 6.2818 -0.9145 6.0789 17 7 5.8516 -2.2752 5.7228 18 6 5.9557 -3.3802 6.5248 19 1 5.4539 -4.2962 6.2498 20 6 6.7062 -3.3232 7.6911 21 7 6.5853 -4.2690 8.5984 22 14 7.8879 -1.9042 7.9729 23 1 8.6564 -2.1405 9.2214 24 1 8.8255 -1.8056 6.8256 25 1 7.1211 -0.6385 8.0957 26 6 5.2952 -2.2542 4.3561 27 6 4.8557 -0.4475 2.6561 28 6 4.4899 1.0310 2.4750 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 4.2851 4.6574 1.3982 35 1 2.9779 5.5820 0.6207 36 1 2.6913 4.7765 2.1819 37 1 2.0920 1.0975 4.9366 38 1 3.7970 1.5569 5.1823 39 1 2.7410 -1.1617 4.2766 40 1 3.5283 -0.7854 5.8281 41 1 5.5615 0.9612 5.2254 42 1 6.8210 0.1407 4.2455 43 1 5.7453 -0.5764 6.9656 44 1 7.3556 -0.9023 6.2659 45 1 5.9197 -4.9658 8.4870 46 1 6.0595 -2.5336 3.6309 47 1 4.4393 -2.9252 4.2844 48 1 5.8482 -0.6292 2.2439 49 1 4.1266 -1.0687 2.1359 50 1 4.3721 1.2513 1.4141 51 1 5.2770 1.6568 2.8955 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035253954.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:36:19 Heat of formation + Delta-G solvation = 31.102578 kcal Electronic energy + Delta-G solvation = -32432.475755 eV Core-core repulsion = 28334.977684 eV Total energy + Delta-G solvation = -4097.498071 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -45.95746 -41.67797 -40.08821 -37.41696 -35.90230 -35.59698 -34.91393 -33.06540 -32.39428 -31.25176 -30.62510 -29.79325 -28.74249 -26.29804 -25.32426 -24.77796 -24.19868 -23.88435 -22.31709 -21.52282 -20.73067 -19.87462 -19.23135 -18.77473 -18.40300 -17.66115 -17.05102 -17.01143 -16.77066 -16.34179 -15.62136 -15.47793 -15.37506 -15.05422 -14.99342 -14.79474 -14.57193 -14.36286 -14.31830 -14.10336 -14.02187 -13.82929 -13.59551 -13.48655 -13.21390 -13.03059 -12.89225 -12.60146 -12.57689 -12.51986 -12.22946 -11.92147 -11.88868 -11.71250 -11.59466 -11.43734 -11.36628 -11.24995 -10.95118 -10.90944 -10.61007 -10.42206 -9.75130 -9.03803 -8.63124 -5.44605 0.24021 0.82822 1.23333 1.40970 1.50793 1.66215 1.73196 2.07053 2.56892 3.01799 3.14437 3.18385 3.34077 3.45711 3.54472 3.70634 3.81322 3.84046 4.03430 4.06371 4.11089 4.18696 4.22718 4.25365 4.31103 4.42818 4.46863 4.56470 4.58244 4.61216 4.66994 4.68852 4.74091 4.75017 4.76622 4.87420 4.90741 4.91631 4.98713 5.03863 5.06922 5.07717 5.10018 5.24721 5.25583 5.34370 5.40722 5.51928 5.59783 6.12885 6.22190 6.85457 6.93026 7.15772 7.48675 8.13214 8.89908 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019344 B = 0.002871 C = 0.002739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.127119 B = 9749.549796 C =10221.889289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.048 4.048 3 C 0.034 3.966 4 O 0.093 5.907 5 N -0.374 5.374 6 C 0.053 3.947 7 C -0.079 4.079 8 C -0.263 4.263 9 C 0.605 3.395 10 O -0.569 6.569 11 N -0.588 5.588 12 C 0.119 3.881 13 C -0.105 4.105 14 C -0.057 4.057 15 C -0.111 4.111 16 C 0.100 3.900 17 N -0.632 5.632 18 C -0.305 4.305 19 H 0.042 0.958 20 C -0.083 4.083 21 N -0.969 5.969 22 Si 1.112 2.888 23 H -0.318 1.318 24 H -0.284 1.284 25 H -0.250 1.250 26 C 0.141 3.859 27 C -0.109 4.109 28 C 0.112 3.888 29 H 0.066 0.934 30 H 0.089 0.911 31 H 0.040 0.960 32 H 0.123 0.877 33 H 0.098 0.902 34 H 0.105 0.895 35 H 0.091 0.909 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.089 0.911 39 H 0.060 0.940 40 H 0.059 0.941 41 H 0.096 0.904 42 H 0.091 0.909 43 H 0.030 0.970 44 H 0.020 0.980 45 H 0.246 0.754 46 H 0.032 0.968 47 H 0.029 0.971 48 H 0.097 0.903 49 H 0.073 0.927 50 H 0.091 0.909 51 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.234 17.261 -21.424 28.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.086 4.086 3 C -0.030 4.030 4 O 0.034 5.966 5 N -0.082 5.082 6 C -0.109 4.109 7 C -0.136 4.136 8 C -0.270 4.270 9 C 0.392 3.608 10 O -0.448 6.448 11 N -0.320 5.320 12 C -0.003 4.003 13 C -0.144 4.144 14 C -0.058 4.058 15 C -0.148 4.148 16 C -0.024 4.024 17 N -0.359 5.359 18 C -0.434 4.434 19 H 0.060 0.940 20 C -0.275 4.275 21 N -0.614 5.614 22 Si 0.941 3.059 23 H -0.247 1.247 24 H -0.211 1.211 25 H -0.175 1.175 26 C 0.017 3.983 27 C -0.148 4.148 28 C -0.009 4.009 29 H 0.086 0.914 30 H 0.108 0.892 31 H 0.059 0.941 32 H 0.141 0.859 33 H 0.117 0.883 34 H 0.123 0.877 35 H 0.110 0.890 36 H 0.099 0.901 37 H 0.100 0.900 38 H 0.107 0.893 39 H 0.079 0.921 40 H 0.078 0.922 41 H 0.114 0.886 42 H 0.110 0.890 43 H 0.048 0.952 44 H 0.038 0.962 45 H 0.055 0.945 46 H 0.050 0.950 47 H 0.047 0.953 48 H 0.115 0.885 49 H 0.092 0.908 50 H 0.109 0.891 51 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -6.391 18.624 -21.120 28.874 hybrid contribution -1.428 -1.897 0.302 2.394 sum -7.819 16.726 -20.817 27.826 Atomic orbital electron populations 1.21770 0.92781 1.03971 1.02137 1.20442 0.97192 0.84449 1.06545 1.25084 0.96781 0.96694 0.84463 1.84522 1.61484 1.17517 1.33104 1.73621 1.18379 0.99233 1.16968 1.25145 0.99682 0.97221 0.88856 1.20352 1.03286 0.90606 0.99359 1.21769 1.14384 0.96270 0.94582 1.17041 0.82746 0.76680 0.84322 1.90801 1.29770 1.55667 1.68588 1.48082 1.13317 1.59437 1.11123 1.21682 1.03074 0.95163 0.80337 1.21535 0.95995 0.95791 1.01034 1.21003 0.94528 0.94249 0.96045 1.22689 0.98948 0.97758 0.95453 1.22143 0.96309 0.85475 0.98455 1.44932 1.73466 1.03771 1.13754 1.20048 1.28450 0.91292 1.03631 0.93988 1.27139 1.02614 1.05087 0.92708 1.70996 1.37962 1.16646 1.35815 0.83352 0.74840 0.73975 0.73758 1.24748 1.21141 1.17538 1.21751 0.95530 0.95589 0.85470 1.21715 1.03765 0.95742 0.93558 1.21949 0.84619 0.96580 0.97790 0.91445 0.89194 0.94097 0.85856 0.88345 0.87658 0.89027 0.90096 0.90010 0.89314 0.92132 0.92222 0.88578 0.89006 0.95204 0.96239 0.94520 0.95005 0.95266 0.88492 0.90814 0.89066 0.88817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 9.89 71.98 0.71 -1.17 16 2 C -0.05 -0.57 6.38 29.84 0.19 -0.38 16 3 C 0.03 0.57 6.69 25.48 0.17 0.74 16 4 O 0.09 1.76 11.06 76.90 0.85 2.61 16 5 N -0.37 -7.72 12.01 -44.79 -0.54 -8.26 16 6 C 0.05 1.00 7.59 45.16 0.34 1.35 16 7 C -0.08 -1.04 10.49 71.24 0.75 -0.29 16 8 C -0.26 -5.23 4.22 -18.74 -0.08 -5.31 16 9 C 0.61 14.00 7.48 86.66 0.65 14.65 16 10 O -0.57 -17.61 16.51 -4.05 -0.07 -17.68 16 11 N -0.59 -11.41 2.96 -822.15 -2.43 -13.84 16 12 C 0.12 2.61 6.12 86.41 0.53 3.14 16 13 C -0.11 -2.73 4.87 30.42 0.15 -2.58 16 14 C -0.06 -1.43 0.55 -51.84 -0.03 -1.45 16 15 C -0.11 -2.82 4.91 31.56 0.16 -2.66 16 16 C 0.10 3.88 4.24 86.76 0.37 4.25 16 17 N -0.63 -29.12 3.31 -692.29 -2.29 -31.42 16 18 C -0.31 -17.59 10.56 84.03 0.89 -16.70 16 19 H 0.04 2.64 8.06 -2.91 -0.02 2.62 16 20 C -0.08 -4.99 5.50 84.86 0.47 -4.52 16 21 N -0.97 -63.10 13.70 21.65 0.30 -62.80 16 22 Si 1.11 53.58 24.53 68.60 1.68 55.27 16 23 H -0.32 -15.97 7.11 99.48 0.71 -15.27 16 24 H -0.28 -12.79 6.84 99.48 0.68 -12.10 16 25 H -0.25 -10.49 5.43 99.48 0.54 -9.95 16 26 C 0.14 5.02 6.16 86.63 0.53 5.55 16 27 C -0.11 -1.84 4.84 30.43 0.15 -1.69 16 28 C 0.11 1.62 6.07 86.43 0.52 2.15 16 29 H 0.07 0.77 8.14 -2.39 -0.02 0.76 16 30 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.12 0.81 8.14 -2.39 -0.02 0.80 16 33 H 0.10 1.21 8.11 -2.38 -0.02 1.19 16 34 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.08 2.03 6.99 -2.39 -0.02 2.02 16 38 H 0.09 1.71 6.55 -2.39 -0.02 1.69 16 39 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.06 1.91 7.82 -2.38 -0.02 1.89 16 41 H 0.10 1.97 6.17 -2.39 -0.01 1.96 16 42 H 0.09 1.95 7.98 -2.38 -0.02 1.93 16 43 H 0.03 1.24 6.79 -2.39 -0.02 1.22 16 44 H 0.02 0.82 3.81 -2.39 -0.01 0.81 16 45 H 0.25 16.10 8.73 -92.71 -0.81 15.29 16 46 H 0.03 1.10 8.00 -2.39 -0.02 1.08 16 47 H 0.03 1.10 8.03 -2.39 -0.02 1.08 16 48 H 0.10 1.40 8.09 -2.39 -0.02 1.38 16 49 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 50 H 0.09 1.18 6.24 -2.39 -0.01 1.16 16 51 H 0.09 1.10 7.62 -2.39 -0.02 1.08 16 Total: -1.00 -77.75 392.29 4.66 -73.09 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: 0.70 Total: 7.99 kcal Atomic # 6 Polarization: -11.41 SS G_CDS: 6.46 Total: -4.95 kcal Atomic # 7 Polarization: -111.35 SS G_CDS: -4.97 Total: -116.32 kcal Atomic # 8 Polarization: -15.86 SS G_CDS: 0.78 Total: -15.07 kcal Atomic # 14 Polarization: 53.58 SS G_CDS: 1.68 Total: 55.27 kcal Total: -77.75 4.66 -73.09 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035253954.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.189 kcal (2) G-P(sol) polarization free energy of solvation -77.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.086 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds