Wall clock time and date at job start Wed Apr 1 2020 04:21:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50699 * 109.46981 * 2 1 4 4 C 1.38020 * 119.50981 * 125.25621 * 3 2 1 5 5 C 1.39928 * 119.13022 * 180.24750 * 4 3 2 6 6 C 1.48165 * 120.88875 * 179.77618 * 5 4 3 7 7 O 1.21512 * 119.99400 * 140.06056 * 6 5 4 8 8 N 1.34768 * 120.00514 * 320.05035 * 6 5 4 9 9 C 1.46929 * 120.63307 * 174.18222 * 8 6 5 10 10 C 1.53194 * 108.77596 * 126.37858 * 9 8 6 11 11 C 1.53042 * 109.31412 * 54.63325 * 10 9 8 12 12 H 1.08993 * 109.45763 * 178.63085 * 11 10 9 13 13 N 1.46498 * 109.45948 * 58.65589 * 11 10 9 14 14 C 1.36936 * 119.99490 * 84.97333 * 13 11 10 15 15 H 1.08002 * 120.00492 * 0.02562 * 14 13 11 16 16 C 1.38811 * 119.99824 * 180.02562 * 14 13 11 17 17 N 1.31627 * 120.00116 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 120.00176 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47086 * 90.00007 * 18 16 14 20 20 H 1.48501 * 109.46852 * 329.99921 * 18 16 14 21 21 H 1.48503 * 109.46838 * 209.99813 * 18 16 14 22 22 C 1.53041 * 109.52625 * 298.64534 * 11 10 9 23 23 H 1.09003 * 109.49834 * 301.40356 * 22 11 10 24 24 C 1.53006 * 109.49740 * 181.31062 * 22 11 10 25 25 C 1.53000 * 109.46934 * 174.99600 * 24 22 11 26 26 C 1.46928 * 120.62961 * 354.16815 * 8 6 5 27 27 C 1.39609 * 118.21922 * 359.50787 * 5 4 3 28 28 C 1.38856 * 118.94702 * 0.24795 * 27 5 4 29 29 O 1.35684 * 119.62343 * 179.97438 * 28 27 5 30 30 N 1.31880 * 119.51431 * 304.99834 * 3 2 1 31 31 H 1.09000 * 109.46912 * 59.99713 * 1 2 3 32 32 H 1.08998 * 109.47038 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.46918 * 299.99934 * 1 2 3 34 34 H 1.09000 * 109.46918 * 240.00066 * 2 1 3 35 35 H 1.09000 * 109.46912 * 120.00287 * 2 1 3 36 36 H 1.08003 * 120.43736 * 0.02562 * 4 3 2 37 37 H 1.08999 * 109.58487 * 6.59021 * 9 8 6 38 38 H 1.09002 * 109.58636 * 246.16011 * 9 8 6 39 39 H 1.09001 * 109.49048 * 294.68316 * 10 9 8 40 40 H 1.08995 * 109.52345 * 174.60463 * 10 9 8 41 41 H 0.96992 * 120.00297 * 264.97159 * 13 11 10 42 42 H 0.97003 * 119.99267 * 0.02562 * 17 16 14 43 43 H 1.08993 * 109.46937 * 294.99993 * 24 22 11 44 44 H 1.09003 * 109.46828 * 54.99716 * 24 22 11 45 45 H 1.09005 * 109.46778 * 60.00572 * 25 24 22 46 46 H 1.09007 * 109.46531 * 180.02562 * 25 24 22 47 47 H 1.08993 * 109.47629 * 299.99968 * 25 24 22 48 48 H 1.08998 * 109.58676 * 353.41093 * 26 8 6 49 49 H 1.08999 * 109.58900 * 113.83666 * 26 8 6 50 50 H 1.07999 * 120.53270 * 180.26814 * 27 5 4 51 51 H 0.96694 * 113.99971 * 89.99815 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.9126 1.8307 0.9808 5 6 3.3699 3.1531 0.9763 6 6 4.3115 3.6359 2.0134 7 8 5.2197 4.3835 1.7087 8 7 4.1606 3.2462 3.2947 9 6 5.1569 3.6120 4.3108 10 6 4.4412 4.2987 5.4783 11 6 3.3237 3.3885 5.9928 12 1 2.8286 3.8643 6.8392 13 7 3.8941 2.1078 6.4178 14 6 4.4075 1.9723 7.6801 15 1 4.3915 2.8093 8.3624 16 6 4.9485 0.7590 8.0827 17 7 4.9675 -0.2614 7.2514 18 14 5.6482 0.5738 9.8048 19 1 4.5774 0.1195 10.7280 20 1 6.1783 1.8818 10.2670 21 1 6.7451 -0.4271 9.7884 22 6 2.3053 3.1475 4.8761 23 1 1.8986 4.1021 4.5423 24 6 1.1715 2.2641 5.4008 25 6 0.0929 2.1260 4.3245 26 6 2.9965 2.4476 3.7021 27 6 2.9196 4.0039 -0.0349 28 6 2.0379 3.5089 -0.9865 29 8 1.5911 4.3239 -1.9751 30 7 1.6283 2.2528 -0.9401 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 1.8934 -0.5139 0.8900 36 1 3.2414 1.1408 1.7440 37 1 5.8872 4.2951 3.8771 38 1 5.6607 2.7140 4.6684 39 1 4.0144 5.2425 5.1387 40 1 5.1537 4.4894 6.2808 41 1 3.9081 1.3559 5.8053 42 1 4.6038 -0.1652 6.3573 43 1 1.5645 1.2785 5.6500 44 1 0.7393 2.7190 6.2921 45 1 0.5251 1.6711 3.4332 46 1 -0.7151 1.4970 4.6986 47 1 -0.3001 3.1116 4.0753 48 1 2.3014 2.3625 2.8668 49 1 3.3242 1.4547 4.0101 50 1 3.2520 5.0306 -0.0766 51 1 2.1438 4.3193 -2.7684 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037874578.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:21:42 Heat of formation + Delta-G solvation = -32.799813 kcal Electronic energy + Delta-G solvation = -32349.911219 eV Core-core repulsion = 28249.642133 eV Total energy + Delta-G solvation = -4100.269087 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.24026 -39.91049 -38.08498 -37.55789 -34.61732 -34.21189 -33.97543 -32.80408 -31.71302 -29.81952 -29.40032 -28.40799 -25.95865 -24.89252 -23.92350 -23.71297 -23.42401 -22.31108 -20.80849 -20.01927 -19.05739 -18.38317 -17.53673 -17.33550 -16.75782 -16.38679 -15.89517 -15.51926 -15.18576 -14.94588 -14.78064 -14.52418 -14.27951 -14.00669 -13.73230 -13.61829 -13.44339 -13.36670 -13.11788 -12.81844 -12.57823 -12.31303 -12.27257 -12.09227 -11.95702 -11.75388 -11.62645 -11.29399 -11.25356 -10.96792 -10.79202 -10.63888 -10.43586 -10.37342 -10.24279 -10.16981 -10.04060 -9.94934 -9.49883 -9.21945 -9.05781 -8.97440 -8.46023 -7.09877 -6.15769 -3.16307 0.53054 0.67413 2.56525 2.92840 3.19597 3.47094 3.48471 3.52082 3.66138 4.13722 4.20455 4.61271 4.63239 4.70371 4.80067 4.89377 5.01300 5.03550 5.07912 5.13002 5.16663 5.39356 5.40076 5.45722 5.47989 5.50660 5.53671 5.59706 5.64041 5.68467 5.69481 5.74916 5.82576 5.86036 5.95150 6.02323 6.04642 6.10885 6.15537 6.20049 6.29773 6.39059 6.42301 6.58121 6.63089 6.73331 6.83290 7.15302 7.42378 7.59679 7.76385 8.06127 8.68889 9.14632 10.01028 10.15990 11.31877 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013537 B = 0.003275 C = 0.002992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2067.961066 B = 8547.074029 C = 9357.006853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.075 4.075 3 C 0.154 3.846 4 C -0.152 4.152 5 C -0.056 4.056 6 C 0.556 3.444 7 O -0.536 6.536 8 N -0.590 5.590 9 C 0.120 3.880 10 C -0.149 4.149 11 C 0.184 3.816 12 H 0.053 0.947 13 N -0.729 5.729 14 C -0.328 4.328 15 H 0.064 0.936 16 C -0.043 4.043 17 N -0.943 5.943 18 Si 1.079 2.921 19 H -0.296 1.296 20 H -0.295 1.295 21 H -0.289 1.289 22 C -0.106 4.106 23 H 0.069 0.931 24 C -0.109 4.109 25 C -0.153 4.153 26 C 0.102 3.898 27 C -0.143 4.143 28 C 0.313 3.687 29 O -0.479 6.479 30 N -0.487 5.487 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.054 0.946 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.149 0.851 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.049 0.951 40 H 0.076 0.924 41 H 0.365 0.635 42 H 0.253 0.747 43 H 0.074 0.926 44 H 0.064 0.936 45 H 0.050 0.950 46 H 0.053 0.947 47 H 0.048 0.952 48 H 0.086 0.914 49 H 0.077 0.923 50 H 0.148 0.852 51 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.391 4.366 -15.322 18.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.113 4.113 3 C 0.017 3.983 4 C -0.172 4.172 5 C -0.067 4.067 6 C 0.342 3.658 7 O -0.414 6.414 8 N -0.321 5.321 9 C -0.001 4.001 10 C -0.190 4.190 11 C 0.074 3.926 12 H 0.071 0.929 13 N -0.372 5.372 14 C -0.459 4.459 15 H 0.082 0.918 16 C -0.240 4.240 17 N -0.589 5.589 18 Si 0.911 3.089 19 H -0.224 1.224 20 H -0.222 1.222 21 H -0.215 1.215 22 C -0.126 4.126 23 H 0.087 0.913 24 C -0.148 4.148 25 C -0.210 4.210 26 C -0.020 4.020 27 C -0.165 4.165 28 C 0.133 3.867 29 O -0.286 6.286 30 N -0.207 5.207 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.074 0.926 34 H 0.104 0.896 35 H 0.104 0.896 36 H 0.167 0.833 37 H 0.100 0.900 38 H 0.100 0.900 39 H 0.068 0.932 40 H 0.095 0.905 41 H 0.200 0.800 42 H 0.064 0.936 43 H 0.093 0.907 44 H 0.083 0.917 45 H 0.069 0.931 46 H 0.072 0.928 47 H 0.067 0.933 48 H 0.104 0.896 49 H 0.095 0.905 50 H 0.166 0.834 51 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -8.161 3.770 -14.484 17.046 hybrid contribution 0.186 1.236 -0.907 1.544 sum -7.975 5.005 -15.391 18.043 Atomic orbital electron populations 1.21683 0.93764 1.02006 1.02772 1.20569 0.97355 0.89586 1.03784 1.20972 0.92600 0.95732 0.89019 1.22362 0.98646 0.95914 1.00298 1.20262 0.96594 0.94305 0.95559 1.18154 0.84509 0.80772 0.82324 1.90771 1.33873 1.35718 1.81061 1.48048 1.24391 1.52283 1.07354 1.21651 0.90130 1.01134 0.87208 1.22514 1.00747 0.98207 0.97511 1.20160 0.90825 0.88089 0.93533 0.92880 1.42445 1.72506 1.08161 1.14136 1.20042 1.36077 0.99205 0.90579 0.91777 1.25678 1.00467 0.91945 1.05930 1.70891 1.49020 1.31600 1.07345 0.83228 0.76375 0.74999 0.74318 1.22416 1.22221 1.21490 1.21793 0.96267 0.98848 0.95670 0.91276 1.21419 0.94453 1.01058 0.97823 1.21857 0.98935 1.01140 0.99102 1.22212 0.86816 0.94958 0.98018 1.22125 0.97117 1.02049 0.95197 1.18914 0.90981 0.86492 0.90266 1.84796 1.54860 1.61453 1.27490 1.66765 1.24613 1.03559 1.25796 0.91639 0.92044 0.92647 0.89604 0.89596 0.83327 0.89985 0.89962 0.93193 0.90524 0.80005 0.93602 0.90725 0.91689 0.93130 0.92822 0.93277 0.89568 0.90533 0.83418 0.74109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 9.77 37.16 0.36 -0.84 16 2 C -0.08 -0.64 6.33 -27.88 -0.18 -0.82 16 3 C 0.15 1.69 6.17 -82.65 -0.51 1.18 16 4 C -0.15 -1.76 7.09 -39.03 -0.28 -2.03 16 5 C -0.06 -0.74 5.15 -104.68 -0.54 -1.28 16 6 C 0.56 8.79 7.38 -12.19 -0.09 8.70 16 7 O -0.54 -9.99 16.37 5.35 0.09 -9.90 16 8 N -0.59 -9.15 2.97 -173.78 -0.52 -9.67 16 9 C 0.12 2.06 6.18 -3.71 -0.02 2.04 16 10 C -0.15 -2.54 5.78 -26.61 -0.15 -2.70 16 11 C 0.18 3.32 2.53 -67.89 -0.17 3.15 16 12 H 0.05 1.01 8.08 -51.93 -0.42 0.60 16 13 N -0.73 -16.00 3.72 -53.39 -0.20 -16.20 16 14 C -0.33 -8.45 9.93 -15.06 -0.15 -8.60 16 15 H 0.06 1.66 7.83 -52.49 -0.41 1.25 16 16 C -0.04 -1.16 5.50 -17.43 -0.10 -1.25 16 17 N -0.94 -27.34 13.70 55.49 0.76 -26.58 16 18 Si 1.08 24.95 29.92 -169.99 -5.09 19.86 16 19 H -0.30 -6.72 7.11 56.52 0.40 -6.31 16 20 H -0.30 -6.50 7.11 56.52 0.40 -6.09 16 21 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 22 C -0.11 -1.57 2.14 -90.51 -0.19 -1.76 16 23 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 24 C -0.11 -1.56 5.19 -26.73 -0.14 -1.70 16 25 C -0.15 -1.78 9.67 37.16 0.36 -1.42 16 26 C 0.10 1.44 3.53 -3.72 -0.01 1.43 16 27 C -0.14 -1.75 9.70 -38.84 -0.38 -2.12 16 28 C 0.31 3.64 7.74 -17.16 -0.13 3.51 16 29 O -0.48 -4.66 13.56 -18.75 -0.25 -4.91 16 30 N -0.49 -5.85 9.87 -9.59 -0.09 -5.94 16 31 H 0.06 0.61 7.94 -51.93 -0.41 0.19 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.09 0.63 7.86 -51.93 -0.41 0.23 16 36 H 0.15 1.60 6.53 -52.48 -0.34 1.25 16 37 H 0.08 1.42 7.00 -51.93 -0.36 1.06 16 38 H 0.08 1.59 7.74 -51.93 -0.40 1.19 16 39 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 41 H 0.37 8.25 4.77 -40.82 -0.19 8.06 16 42 H 0.25 7.14 6.77 -40.82 -0.28 6.87 16 43 H 0.07 1.23 7.70 -51.93 -0.40 0.83 16 44 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 45 H 0.05 0.55 6.70 -51.93 -0.35 0.20 16 46 H 0.05 0.58 8.14 -51.92 -0.42 0.16 16 47 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 48 H 0.09 1.07 3.45 -51.93 -0.18 0.89 16 49 H 0.08 1.17 6.63 -51.93 -0.34 0.82 16 50 H 0.15 1.71 8.06 -52.49 -0.42 1.29 16 51 H 0.40 1.85 9.06 45.56 0.41 2.26 16 LS Contribution 400.59 15.07 6.04 6.04 Total: -1.00 -31.95 400.59 -8.69 -40.65 By element: Atomic # 1 Polarization: 18.29 SS G_CDS: -7.11 Total: 11.18 kcal Atomic # 6 Polarization: -2.21 SS G_CDS: -2.32 Total: -4.53 kcal Atomic # 7 Polarization: -58.34 SS G_CDS: -0.05 Total: -58.39 kcal Atomic # 8 Polarization: -14.64 SS G_CDS: -0.17 Total: -14.81 kcal Atomic # 14 Polarization: 24.95 SS G_CDS: -5.09 Total: 19.86 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -31.95 -8.69 -40.65 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037874578.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.848 kcal (2) G-P(sol) polarization free energy of solvation -31.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds