Wall clock time and date at job start Wed Apr 1 2020 04:21:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50699 * 109.46981 * 2 1 4 4 C 1.38020 * 119.50981 * 125.25621 * 3 2 1 5 5 C 1.39928 * 119.13022 * 180.24750 * 4 3 2 6 6 C 1.48165 * 120.88875 * 179.77618 * 5 4 3 7 7 O 1.21512 * 119.99400 * 140.06056 * 6 5 4 8 8 N 1.34768 * 120.00514 * 320.05035 * 6 5 4 9 9 C 1.46929 * 120.63307 * 174.18222 * 8 6 5 10 10 C 1.53194 * 108.77596 * 126.37858 * 9 8 6 11 11 C 1.53042 * 109.31412 * 54.63325 * 10 9 8 12 12 H 1.08993 * 109.45763 * 178.63085 * 11 10 9 13 13 N 1.46498 * 109.45948 * 58.65589 * 11 10 9 14 14 C 1.36936 * 119.99490 * 84.97333 * 13 11 10 15 15 H 1.08002 * 120.00492 * 0.02562 * 14 13 11 16 16 C 1.38811 * 119.99824 * 180.02562 * 14 13 11 17 17 N 1.31627 * 120.00116 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 120.00176 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47086 * 90.00007 * 18 16 14 20 20 H 1.48501 * 109.46852 * 329.99921 * 18 16 14 21 21 H 1.48503 * 109.46838 * 209.99813 * 18 16 14 22 22 C 1.53041 * 109.52625 * 298.64534 * 11 10 9 23 23 H 1.09003 * 109.49834 * 301.40356 * 22 11 10 24 24 C 1.53006 * 109.49740 * 181.31062 * 22 11 10 25 25 C 1.53000 * 109.46934 * 174.99600 * 24 22 11 26 26 C 1.46928 * 120.62961 * 354.16815 * 8 6 5 27 27 C 1.39609 * 118.21922 * 359.50787 * 5 4 3 28 28 C 1.38856 * 118.94702 * 0.24795 * 27 5 4 29 29 O 1.35684 * 119.62343 * 179.97438 * 28 27 5 30 30 N 1.31880 * 119.51431 * 304.99834 * 3 2 1 31 31 H 1.09000 * 109.46912 * 59.99713 * 1 2 3 32 32 H 1.08998 * 109.47038 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.46918 * 299.99934 * 1 2 3 34 34 H 1.09000 * 109.46918 * 240.00066 * 2 1 3 35 35 H 1.09000 * 109.46912 * 120.00287 * 2 1 3 36 36 H 1.08003 * 120.43736 * 0.02562 * 4 3 2 37 37 H 1.08999 * 109.58487 * 6.59021 * 9 8 6 38 38 H 1.09002 * 109.58636 * 246.16011 * 9 8 6 39 39 H 1.09001 * 109.49048 * 294.68316 * 10 9 8 40 40 H 1.08995 * 109.52345 * 174.60463 * 10 9 8 41 41 H 0.96992 * 120.00297 * 264.97159 * 13 11 10 42 42 H 0.97003 * 119.99267 * 0.02562 * 17 16 14 43 43 H 1.08993 * 109.46937 * 294.99993 * 24 22 11 44 44 H 1.09003 * 109.46828 * 54.99716 * 24 22 11 45 45 H 1.09005 * 109.46778 * 60.00572 * 25 24 22 46 46 H 1.09007 * 109.46531 * 180.02562 * 25 24 22 47 47 H 1.08993 * 109.47629 * 299.99968 * 25 24 22 48 48 H 1.08998 * 109.58676 * 353.41093 * 26 8 6 49 49 H 1.08999 * 109.58900 * 113.83666 * 26 8 6 50 50 H 1.07999 * 120.53270 * 180.26814 * 27 5 4 51 51 H 0.96694 * 113.99971 * 89.99815 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.9126 1.8307 0.9808 5 6 3.3699 3.1531 0.9763 6 6 4.3115 3.6359 2.0134 7 8 5.2197 4.3835 1.7087 8 7 4.1606 3.2462 3.2947 9 6 5.1569 3.6120 4.3108 10 6 4.4412 4.2987 5.4783 11 6 3.3237 3.3885 5.9928 12 1 2.8286 3.8643 6.8392 13 7 3.8941 2.1078 6.4178 14 6 4.4075 1.9723 7.6801 15 1 4.3915 2.8093 8.3624 16 6 4.9485 0.7590 8.0827 17 7 4.9675 -0.2614 7.2514 18 14 5.6482 0.5738 9.8048 19 1 4.5774 0.1195 10.7280 20 1 6.1783 1.8818 10.2670 21 1 6.7451 -0.4271 9.7884 22 6 2.3053 3.1475 4.8761 23 1 1.8986 4.1021 4.5423 24 6 1.1715 2.2641 5.4008 25 6 0.0929 2.1260 4.3245 26 6 2.9965 2.4476 3.7021 27 6 2.9196 4.0039 -0.0349 28 6 2.0379 3.5089 -0.9865 29 8 1.5911 4.3239 -1.9751 30 7 1.6283 2.2528 -0.9401 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 1.8934 -0.5139 0.8900 36 1 3.2414 1.1408 1.7440 37 1 5.8872 4.2951 3.8771 38 1 5.6607 2.7140 4.6684 39 1 4.0144 5.2425 5.1387 40 1 5.1537 4.4894 6.2808 41 1 3.9081 1.3559 5.8053 42 1 4.6038 -0.1652 6.3573 43 1 1.5645 1.2785 5.6500 44 1 0.7393 2.7190 6.2921 45 1 0.5251 1.6711 3.4332 46 1 -0.7151 1.4970 4.6986 47 1 -0.3001 3.1116 4.0753 48 1 2.3014 2.3625 2.8668 49 1 3.3242 1.4547 4.0101 50 1 3.2520 5.0306 -0.0766 51 1 2.1438 4.3193 -2.7684 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037874578.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:21:41 Heat of formation + Delta-G solvation = -54.626052 kcal Electronic energy + Delta-G solvation = -32350.857676 eV Core-core repulsion = 28249.642133 eV Total energy + Delta-G solvation = -4101.215543 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.28434 -41.06026 -39.43657 -38.36234 -36.22132 -35.34289 -35.04553 -34.02911 -33.03395 -31.08170 -30.46782 -29.82421 -27.18543 -25.98912 -25.44297 -24.98905 -24.61133 -23.27054 -22.00831 -21.17064 -20.23925 -19.54327 -19.27309 -18.49811 -17.77336 -17.50603 -17.07963 -16.67920 -16.42373 -16.28133 -15.91712 -15.65989 -15.52144 -15.31800 -14.98332 -14.86139 -14.78192 -14.36982 -14.24589 -14.20028 -13.66908 -13.51230 -13.20043 -13.11715 -13.01914 -12.80166 -12.69879 -12.59104 -12.35466 -12.27304 -12.18232 -11.93643 -11.90555 -11.74443 -11.65569 -11.53421 -11.42726 -11.12348 -10.96729 -10.83715 -10.50145 -9.92693 -9.81956 -9.01950 -8.28984 -5.22418 -0.45078 -0.19853 1.40174 1.61200 1.69605 1.70438 1.83512 2.33627 2.58097 2.74221 3.04232 3.38102 3.47266 3.57704 3.70022 3.76650 3.80470 3.89344 3.92464 4.07878 4.16735 4.23331 4.26710 4.28989 4.34642 4.36330 4.42543 4.46320 4.49871 4.64928 4.71366 4.79632 4.81049 4.82759 4.85515 4.99585 5.01860 5.08794 5.09878 5.15980 5.19434 5.20699 5.27121 5.32824 5.40563 5.47351 5.54690 5.70216 6.16099 6.51139 6.59769 6.76515 6.79329 7.17771 8.08406 8.19787 9.22632 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013537 B = 0.003275 C = 0.002992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2067.961066 B = 8547.074029 C = 9357.006853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.076 4.076 3 C 0.159 3.841 4 C -0.153 4.153 5 C -0.066 4.066 6 C 0.557 3.443 7 O -0.568 6.568 8 N -0.588 5.588 9 C 0.128 3.872 10 C -0.140 4.140 11 C 0.180 3.820 12 H 0.044 0.956 13 N -0.732 5.732 14 C -0.318 4.318 15 H 0.061 0.939 16 C -0.099 4.099 17 N -0.975 5.975 18 Si 1.121 2.879 19 H -0.289 1.289 20 H -0.278 1.278 21 H -0.298 1.298 22 C -0.097 4.097 23 H 0.085 0.915 24 C -0.103 4.103 25 C -0.146 4.146 26 C 0.109 3.891 27 C -0.147 4.147 28 C 0.319 3.681 29 O -0.484 6.484 30 N -0.497 5.497 31 H 0.054 0.946 32 H 0.076 0.924 33 H 0.050 0.950 34 H 0.097 0.903 35 H 0.099 0.901 36 H 0.156 0.844 37 H 0.079 0.921 38 H 0.055 0.945 39 H 0.069 0.931 40 H 0.061 0.939 41 H 0.362 0.638 42 H 0.245 0.755 43 H 0.048 0.952 44 H 0.057 0.943 45 H 0.059 0.941 46 H 0.062 0.938 47 H 0.059 0.941 48 H 0.111 0.889 49 H 0.065 0.935 50 H 0.150 0.850 51 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.982 4.658 -16.427 19.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.114 4.114 3 C 0.021 3.979 4 C -0.173 4.173 5 C -0.077 4.077 6 C 0.346 3.654 7 O -0.449 6.449 8 N -0.319 5.319 9 C 0.006 3.994 10 C -0.181 4.181 11 C 0.071 3.929 12 H 0.062 0.938 13 N -0.375 5.375 14 C -0.450 4.450 15 H 0.079 0.921 16 C -0.291 4.291 17 N -0.624 5.624 18 Si 0.948 3.052 19 H -0.216 1.216 20 H -0.204 1.204 21 H -0.225 1.225 22 C -0.117 4.117 23 H 0.103 0.897 24 C -0.142 4.142 25 C -0.203 4.203 26 C -0.013 4.013 27 C -0.169 4.169 28 C 0.139 3.861 29 O -0.294 6.294 30 N -0.217 5.217 31 H 0.073 0.927 32 H 0.095 0.905 33 H 0.069 0.931 34 H 0.115 0.885 35 H 0.117 0.883 36 H 0.173 0.827 37 H 0.098 0.902 38 H 0.074 0.926 39 H 0.087 0.913 40 H 0.079 0.921 41 H 0.196 0.804 42 H 0.055 0.945 43 H 0.067 0.933 44 H 0.076 0.924 45 H 0.078 0.922 46 H 0.081 0.919 47 H 0.078 0.922 48 H 0.128 0.872 49 H 0.083 0.917 50 H 0.168 0.832 51 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges -9.781 4.105 -15.619 18.880 hybrid contribution 0.644 1.226 -0.654 1.532 sum -9.136 5.331 -16.273 19.409 Atomic orbital electron populations 1.21659 0.93458 1.02821 1.01989 1.20697 0.97520 0.88169 1.05006 1.21343 0.91772 0.96610 0.88151 1.22425 0.98770 0.95270 1.00868 1.20064 0.96964 0.95291 0.95400 1.18531 0.84389 0.80011 0.82515 1.90749 1.35322 1.37261 1.81528 1.48029 1.24332 1.52325 1.07186 1.21389 0.90553 0.99786 0.87682 1.22383 0.99988 0.98739 0.96962 1.20337 0.91637 0.86433 0.94524 0.93768 1.42494 1.72484 1.09526 1.13018 1.20294 1.34291 0.98652 0.91738 0.92056 1.26798 1.01648 0.92172 1.08467 1.70976 1.51244 1.32627 1.07553 0.82665 0.75698 0.75392 0.71413 1.21578 1.20405 1.22518 1.21721 0.95532 0.99892 0.94565 0.89666 1.21326 0.94933 0.99230 0.98666 1.21798 0.98136 1.02104 0.98298 1.22234 0.86583 0.93938 0.98530 1.22163 0.97468 1.02143 0.95132 1.18947 0.90245 0.86477 0.90409 1.84746 1.55470 1.61022 1.28204 1.66880 1.24912 1.03780 1.26148 0.92710 0.90489 0.93081 0.88523 0.88253 0.82677 0.90222 0.92618 0.91277 0.92060 0.80405 0.94461 0.93302 0.92403 0.92199 0.91941 0.92197 0.87153 0.91707 0.83201 0.71514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 9.77 71.98 0.70 -1.30 16 2 C -0.08 -1.10 6.33 29.85 0.19 -0.91 16 3 C 0.16 3.11 6.17 42.50 0.26 3.38 16 4 C -0.15 -3.26 7.09 22.63 0.16 -3.10 16 5 C -0.07 -1.67 5.15 -19.90 -0.10 -1.77 16 6 C 0.56 17.28 7.38 86.88 0.64 17.92 16 7 O -0.57 -21.13 16.37 -3.75 -0.06 -21.20 16 8 N -0.59 -18.00 2.97 -822.01 -2.44 -20.44 16 9 C 0.13 4.45 6.18 86.36 0.53 4.99 16 10 C -0.14 -4.77 5.78 30.67 0.18 -4.59 16 11 C 0.18 6.44 2.53 45.02 0.11 6.55 16 12 H 0.04 1.68 8.08 -2.39 -0.02 1.66 16 13 N -0.73 -32.63 3.72 -322.82 -1.20 -33.83 16 14 C -0.32 -16.55 9.93 84.03 0.83 -15.71 16 15 H 0.06 3.18 7.83 -2.91 -0.02 3.16 16 16 C -0.10 -5.44 5.50 84.86 0.47 -4.97 16 17 N -0.98 -57.64 13.70 21.65 0.30 -57.34 16 18 Si 1.12 50.64 29.92 68.60 2.05 52.69 16 19 H -0.29 -12.55 7.11 99.48 0.71 -11.85 16 20 H -0.28 -11.63 7.11 99.48 0.71 -10.93 16 21 H -0.30 -13.87 7.11 99.48 0.71 -13.16 16 22 C -0.10 -2.77 2.14 -10.72 -0.02 -2.79 16 23 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 24 C -0.10 -2.83 5.19 30.60 0.16 -2.68 16 25 C -0.15 -3.02 9.67 71.98 0.70 -2.32 16 26 C 0.11 2.96 3.53 86.35 0.31 3.27 16 27 C -0.15 -3.37 9.70 22.75 0.22 -3.15 16 28 C 0.32 6.75 7.74 84.78 0.66 7.41 16 29 O -0.48 -8.30 13.56 -90.02 -1.22 -9.52 16 30 N -0.50 -10.80 9.87 -297.16 -2.93 -13.73 16 31 H 0.05 0.89 7.94 -2.39 -0.02 0.88 16 32 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.10 1.22 8.14 -2.39 -0.02 1.21 16 35 H 0.10 1.19 7.86 -2.39 -0.02 1.17 16 36 H 0.16 3.07 6.53 -2.91 -0.02 3.05 16 37 H 0.08 2.81 7.00 -2.39 -0.02 2.79 16 38 H 0.06 2.24 7.74 -2.39 -0.02 2.22 16 39 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 40 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 41 H 0.36 16.76 4.77 -92.71 -0.44 16.32 16 42 H 0.24 14.24 6.77 -92.71 -0.63 13.61 16 43 H 0.05 1.60 7.70 -2.39 -0.02 1.58 16 44 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 45 H 0.06 1.12 6.70 -2.38 -0.02 1.11 16 46 H 0.06 1.20 8.14 -2.38 -0.02 1.18 16 47 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 48 H 0.11 2.50 3.45 -2.39 -0.01 2.49 16 49 H 0.06 1.96 6.63 -2.39 -0.02 1.94 16 50 H 0.15 3.30 8.06 -2.91 -0.02 3.28 16 51 H 0.42 2.89 9.06 -74.06 -0.67 2.22 16 Total: -1.00 -68.86 400.59 0.47 -68.39 By element: Atomic # 1 Polarization: 34.76 SS G_CDS: -0.01 Total: 34.75 kcal Atomic # 6 Polarization: -5.75 SS G_CDS: 5.99 Total: 0.24 kcal Atomic # 7 Polarization: -119.07 SS G_CDS: -6.28 Total: -125.35 kcal Atomic # 8 Polarization: -29.43 SS G_CDS: -1.28 Total: -30.72 kcal Atomic # 14 Polarization: 50.64 SS G_CDS: 2.05 Total: 52.69 kcal Total: -68.86 0.47 -68.39 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037874578.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.761 kcal (2) G-P(sol) polarization free energy of solvation -68.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds