Wall clock time and date at job start Wed Apr 1 2020 06:00:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.50698 * 109.47162 * 2 1 4 4 O 1.34255 * 126.52810 * 269.96088 * 3 2 1 5 5 C 1.34052 * 108.23019 * 180.02562 * 4 3 2 6 6 N 1.29935 * 109.24082 * 359.74427 * 5 4 3 7 7 C 1.36068 * 108.47854 * 0.40729 * 6 5 4 8 8 C 1.47425 * 126.45156 * 179.86143 * 7 6 5 9 9 O 1.21614 * 119.99710 * 185.23581 * 8 7 6 10 10 N 1.34769 * 119.99794 * 5.23516 * 8 7 6 11 11 C 1.46928 * 120.63067 * 175.41108 * 10 8 7 12 12 C 1.53188 * 108.77785 * 233.62638 * 11 10 8 13 13 C 1.53045 * 109.31490 * 305.36887 * 12 11 10 14 14 C 1.53000 * 109.45782 * 181.38163 * 13 12 11 15 15 H 1.08990 * 110.64435 * 298.30630 * 14 13 12 16 16 C 1.55159 * 110.86751 * 175.06030 * 14 13 12 17 17 C 1.55134 * 101.48349 * 205.89953 * 16 14 13 18 18 N 1.47420 * 104.72132 * 37.29569 * 17 16 14 19 19 C 1.36944 * 125.64298 * 155.81819 * 18 17 16 20 20 H 1.08005 * 119.99361 * 188.10828 * 19 18 17 21 21 C 1.38807 * 120.00503 * 8.10416 * 19 18 17 22 22 N 1.31621 * 119.99612 * 28.84262 * 21 19 18 23 23 Si 1.86800 * 120.00358 * 208.84553 * 21 19 18 24 24 H 1.48500 * 109.46983 * 59.99841 * 23 21 19 25 25 H 1.48498 * 109.46893 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.46814 * 299.99964 * 23 21 19 27 27 C 1.47019 * 108.70493 * 335.55282 * 18 17 16 28 28 C 1.53043 * 109.53921 * 61.35882 * 13 12 11 29 29 C 1.46928 * 120.63320 * 355.42844 * 10 8 7 30 30 H 1.09003 * 109.47237 * 60.00248 * 1 2 3 31 31 H 1.09007 * 109.47156 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47636 * 300.00141 * 1 2 3 33 33 H 1.09000 * 109.47095 * 240.00327 * 2 1 3 34 34 H 1.08996 * 109.47409 * 120.00093 * 2 1 3 35 35 H 1.07997 * 125.38284 * 180.02562 * 5 4 3 36 36 H 1.09007 * 109.58944 * 113.83923 * 11 10 8 37 37 H 1.09000 * 109.70224 * 353.48638 * 11 10 8 38 38 H 1.08992 * 109.50173 * 185.41066 * 12 11 10 39 39 H 1.09011 * 109.52019 * 65.33065 * 12 11 10 40 40 H 1.09004 * 109.45538 * 301.35436 * 13 12 11 41 41 H 1.09005 * 111.00693 * 324.13651 * 16 14 13 42 42 H 1.08997 * 111.00667 * 87.99096 * 16 14 13 43 43 H 1.09000 * 110.49703 * 278.45281 * 17 16 14 44 44 H 1.09002 * 110.34379 * 156.06262 * 17 16 14 45 45 H 0.96998 * 120.00486 * 6.90152 * 22 21 19 46 46 H 1.08999 * 109.87891 * 120.70602 * 27 18 17 47 47 H 1.09002 * 109.88336 * 241.71533 * 27 18 17 48 48 H 1.08997 * 109.49546 * 58.58889 * 28 13 12 49 49 H 1.08998 * 109.49178 * 178.68545 * 28 13 12 50 50 H 1.08998 * 109.59317 * 246.15928 * 29 10 8 51 51 H 1.09003 * 109.58401 * 6.58629 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 8 2.2993 2.1740 -1.0788 5 6 2.7238 3.3738 -0.6580 6 7 2.7253 3.3960 0.6412 7 6 2.3021 2.1845 1.0937 8 6 2.1570 1.7779 2.5033 9 8 1.8586 0.6313 2.7777 10 7 2.3551 2.6768 3.4877 11 6 2.1170 2.3143 4.8915 12 6 1.1571 3.3362 5.5087 13 6 1.7215 4.7449 5.3103 14 6 0.7823 5.7658 5.9558 15 1 -0.1998 5.7364 5.4841 16 6 1.3841 7.1940 5.8825 17 6 0.7017 7.8793 7.0955 18 7 0.6396 6.8322 8.1312 19 6 0.5635 7.0486 9.4813 20 1 0.6541 6.2192 10.1671 21 6 0.3701 8.3340 9.9684 22 7 -0.2824 9.2201 9.2463 23 14 1.0358 8.8061 11.6487 24 1 2.5109 8.6354 11.6625 25 1 0.6983 10.2238 11.9343 26 1 0.4269 7.9343 12.6852 27 6 0.6663 5.5171 7.4744 28 6 1.8452 5.0407 3.8138 29 6 2.8129 4.0380 3.1775 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.8932 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 3.0141 4.1941 -1.2976 36 1 3.0609 2.3239 5.4366 37 1 1.6749 1.3194 4.9442 38 1 1.0474 3.1350 6.5742 39 1 0.1843 3.2622 5.0224 40 1 2.7049 4.8109 5.7758 41 1 2.4672 7.1684 6.0024 42 1 1.1073 7.6873 4.9507 43 1 -0.3023 8.2115 6.8311 44 1 1.3015 8.7208 7.4422 45 1 -0.7140 8.9499 8.4207 46 1 1.5266 4.9460 7.8234 47 1 -0.2528 4.9741 7.6943 48 1 0.8663 4.9505 3.3431 49 1 2.2252 6.0526 3.6733 50 1 3.8135 4.1884 3.5828 51 1 2.8288 4.1808 2.0970 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039121685.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:00:47 Heat of formation + Delta-G solvation = 11.969475 kcal Electronic energy + Delta-G solvation = -31272.225535 eV Core-core repulsion = 27173.897790 eV Total energy + Delta-G solvation = -4098.327745 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.91546 -40.23832 -38.52168 -36.78549 -35.42817 -34.55457 -33.76343 -31.84745 -31.19781 -29.70757 -29.07725 -27.90142 -25.51469 -24.77032 -24.09455 -23.30605 -23.23529 -21.95727 -20.89582 -19.98190 -19.65125 -19.37911 -17.85675 -17.48283 -17.28201 -16.81395 -16.08962 -15.40610 -15.34347 -14.99710 -14.80372 -14.51568 -14.20360 -13.97815 -13.81360 -13.65739 -13.48405 -13.22459 -13.12573 -12.94515 -12.93168 -12.41683 -12.12304 -12.06975 -11.82917 -11.65943 -11.56508 -11.41838 -11.27009 -11.09098 -10.73602 -10.56775 -10.47454 -10.37024 -10.19986 -10.00816 -9.95268 -9.83733 -9.53901 -9.45251 -9.37969 -8.68841 -8.34499 -6.89572 -6.04075 -3.01552 0.71517 1.61866 2.11989 2.78489 3.03325 3.53805 3.58222 3.58534 3.75951 4.14123 4.30117 4.61582 4.64774 4.76166 4.81352 4.85790 4.86656 4.91366 5.10458 5.12852 5.25728 5.30067 5.33050 5.36503 5.43690 5.45458 5.54863 5.56231 5.63574 5.69639 5.71375 5.79019 5.81749 5.90691 5.99877 6.02090 6.12164 6.18286 6.22476 6.28084 6.39490 6.49050 6.54555 6.64170 6.72354 6.94869 6.98686 7.10713 7.13750 7.29456 7.83133 7.93049 8.54295 9.09337 9.89579 10.45062 11.29733 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.025334 B = 0.002108 C = 0.002031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.951895 B =13277.784772 C =13783.875318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.048 4.048 3 C 0.047 3.953 4 O -0.197 6.197 5 C 0.177 3.823 6 N -0.459 5.459 7 C -0.069 4.069 8 C 0.600 3.400 9 O -0.541 6.541 10 N -0.588 5.588 11 C 0.111 3.889 12 C -0.128 4.128 13 C -0.075 4.075 14 C -0.093 4.093 15 H 0.068 0.932 16 C -0.129 4.129 17 C 0.144 3.856 18 N -0.607 5.607 19 C -0.334 4.334 20 H 0.067 0.933 21 C -0.028 4.028 22 N -0.922 5.922 23 Si 1.059 2.941 24 H -0.295 1.295 25 H -0.286 1.286 26 H -0.294 1.294 27 C 0.144 3.856 28 C -0.123 4.123 29 C 0.060 3.940 30 H 0.055 0.945 31 H 0.072 0.928 32 H 0.063 0.937 33 H 0.085 0.915 34 H 0.119 0.881 35 H 0.256 0.744 36 H 0.069 0.931 37 H 0.091 0.909 38 H 0.081 0.919 39 H 0.064 0.936 40 H 0.072 0.928 41 H 0.063 0.937 42 H 0.059 0.941 43 H 0.020 0.980 44 H 0.054 0.946 45 H 0.269 0.731 46 H 0.025 0.975 47 H 0.017 0.983 48 H 0.061 0.939 49 H 0.076 0.924 50 H 0.061 0.939 51 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.388 -15.786 -24.431 29.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.086 4.086 3 C -0.010 4.010 4 O -0.083 6.083 5 C -0.050 4.050 6 N -0.188 5.188 7 C -0.188 4.188 8 C 0.387 3.613 9 O -0.420 6.420 10 N -0.319 5.319 11 C -0.011 4.011 12 C -0.166 4.166 13 C -0.094 4.094 14 C -0.112 4.112 15 H 0.086 0.914 16 C -0.168 4.168 17 C 0.018 3.982 18 N -0.334 5.334 19 C -0.461 4.461 20 H 0.085 0.915 21 C -0.228 4.228 22 N -0.564 5.564 23 Si 0.889 3.111 24 H -0.222 1.222 25 H -0.211 1.211 26 H -0.221 1.221 27 C 0.019 3.981 28 C -0.161 4.161 29 C -0.063 4.063 30 H 0.074 0.926 31 H 0.091 0.909 32 H 0.082 0.918 33 H 0.103 0.897 34 H 0.137 0.863 35 H 0.272 0.728 36 H 0.087 0.913 37 H 0.109 0.891 38 H 0.099 0.901 39 H 0.083 0.917 40 H 0.090 0.910 41 H 0.082 0.918 42 H 0.078 0.922 43 H 0.038 0.962 44 H 0.072 0.928 45 H 0.080 0.920 46 H 0.043 0.957 47 H 0.035 0.965 48 H 0.079 0.921 49 H 0.094 0.906 50 H 0.079 0.921 51 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 6.590 -14.605 -22.733 27.812 hybrid contribution -0.370 -1.406 -1.340 1.977 sum 6.221 -16.011 -24.073 29.573 Atomic orbital electron populations 1.21715 0.92966 1.03050 1.02513 1.20431 0.97161 0.85341 1.05621 1.23809 0.98445 0.95544 0.83169 1.84387 1.63485 1.24169 1.36269 1.28246 0.98251 0.86961 0.91541 1.70273 1.18548 1.20572 1.09384 1.21488 1.10547 0.91183 0.95608 1.16762 0.77256 0.84733 0.82551 1.90759 1.49975 1.18326 1.82937 1.47917 1.64672 1.12950 1.06317 1.21712 0.99754 0.99725 0.79885 1.21986 0.98666 0.94478 1.01515 1.21156 0.99335 0.93823 0.95086 1.22165 0.98049 0.94657 0.96319 0.91368 1.22892 0.99894 0.95338 0.98631 1.21595 0.96844 0.92468 0.87269 1.44611 1.86983 0.99610 1.02216 1.19782 1.49589 0.96234 0.80513 0.91504 1.25642 0.99132 0.92837 1.05213 1.70773 1.30699 1.37982 1.16990 0.83606 0.76267 0.76054 0.75146 1.22224 1.21125 1.22132 1.21295 0.97637 0.89319 0.89898 1.21909 0.99747 0.99048 0.95373 1.23074 0.96710 0.79423 1.07047 0.92553 0.90908 0.91803 0.89654 0.86251 0.72839 0.91289 0.89093 0.90086 0.91724 0.90982 0.91803 0.92193 0.96188 0.92775 0.91966 0.95747 0.96480 0.92071 0.90559 0.92096 0.83152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.89 37.15 0.37 -0.65 16 2 C -0.05 -0.36 5.99 -27.89 -0.17 -0.53 16 3 C 0.05 0.43 6.69 -35.08 -0.23 0.20 16 4 O -0.20 -1.52 10.73 6.51 0.07 -1.45 16 5 C 0.18 1.10 13.19 51.96 0.69 1.79 16 6 N -0.46 -4.35 7.67 -11.48 -0.09 -4.44 16 7 C -0.07 -0.77 6.75 -83.02 -0.56 -1.33 16 8 C 0.60 7.80 7.69 -12.52 -0.10 7.71 16 9 O -0.54 -7.82 14.22 5.27 0.07 -7.75 16 10 N -0.59 -7.31 2.97 -174.03 -0.52 -7.83 16 11 C 0.11 1.35 6.42 -3.71 -0.02 1.33 16 12 C -0.13 -1.66 5.17 -26.61 -0.14 -1.79 16 13 C -0.08 -1.03 1.53 -90.57 -0.14 -1.17 16 14 C -0.09 -1.59 2.48 -88.79 -0.22 -1.81 16 15 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 16 C -0.13 -2.35 5.62 -24.46 -0.14 -2.49 16 17 C 0.14 3.45 5.18 -2.41 -0.01 3.44 16 18 N -0.61 -15.96 3.36 -169.94 -0.57 -16.53 16 19 C -0.33 -9.75 10.05 -15.06 -0.15 -9.90 16 20 H 0.07 1.94 7.98 -52.48 -0.42 1.52 16 21 C -0.03 -0.81 5.08 -17.43 -0.09 -0.90 16 22 N -0.92 -28.58 12.65 55.49 0.70 -27.87 16 23 Si 1.06 25.98 30.01 -169.99 -5.10 20.88 16 24 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 25 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 26 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 27 C 0.14 3.08 5.83 -3.07 -0.02 3.06 16 28 C -0.12 -1.48 5.21 -26.61 -0.14 -1.61 16 29 C 0.06 0.68 6.33 -3.71 -0.02 0.66 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.07 0.40 8.14 -51.92 -0.42 -0.02 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.12 1.05 6.38 -51.93 -0.33 0.72 16 35 H 0.26 0.24 8.06 -52.49 -0.42 -0.18 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.09 1.13 7.04 -51.93 -0.37 0.77 16 38 H 0.08 1.07 7.11 -51.93 -0.37 0.70 16 39 H 0.06 0.86 8.14 -51.92 -0.42 0.44 16 40 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.06 1.14 8.05 -51.93 -0.42 0.72 16 42 H 0.06 0.95 8.10 -51.93 -0.42 0.53 16 43 H 0.02 0.51 6.99 -51.93 -0.36 0.15 16 44 H 0.05 1.43 7.46 -51.93 -0.39 1.05 16 45 H 0.27 8.32 5.86 -40.82 -0.24 8.08 16 46 H 0.02 0.52 7.57 -51.93 -0.39 0.12 16 47 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 48 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 49 H 0.08 0.88 7.38 -51.93 -0.38 0.50 16 50 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 51 H 0.15 1.65 3.61 -80.82 -0.29 1.36 16 LS Contribution 393.15 15.07 5.92 5.92 Total: -1.00 -35.08 393.15 -8.85 -43.93 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -8.25 Total: -0.87 kcal Atomic # 6 Polarization: -2.90 SS G_CDS: -1.10 Total: -4.00 kcal Atomic # 7 Polarization: -56.20 SS G_CDS: -0.47 Total: -56.67 kcal Atomic # 8 Polarization: -9.34 SS G_CDS: 0.14 Total: -9.19 kcal Atomic # 14 Polarization: 25.98 SS G_CDS: -5.10 Total: 20.88 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -35.08 -8.85 -43.93 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039121685.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.900 kcal (2) G-P(sol) polarization free energy of solvation -35.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.930 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds