Wall clock time and date at job start Wed Apr 1 2020 06:00:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.50698 * 109.47162 * 2 1 4 4 O 1.34255 * 126.52810 * 269.96088 * 3 2 1 5 5 C 1.34052 * 108.23019 * 180.02562 * 4 3 2 6 6 N 1.29935 * 109.24082 * 359.74427 * 5 4 3 7 7 C 1.36068 * 108.47854 * 0.40729 * 6 5 4 8 8 C 1.47425 * 126.45156 * 179.86143 * 7 6 5 9 9 O 1.21614 * 119.99710 * 185.23581 * 8 7 6 10 10 N 1.34769 * 119.99794 * 5.23516 * 8 7 6 11 11 C 1.46928 * 120.63067 * 175.41108 * 10 8 7 12 12 C 1.53188 * 108.77785 * 233.62638 * 11 10 8 13 13 C 1.53045 * 109.31490 * 305.36887 * 12 11 10 14 14 C 1.53000 * 109.45782 * 181.38163 * 13 12 11 15 15 H 1.08990 * 110.64435 * 298.30630 * 14 13 12 16 16 C 1.55159 * 110.86751 * 175.06030 * 14 13 12 17 17 C 1.55134 * 101.48349 * 205.89953 * 16 14 13 18 18 N 1.47420 * 104.72132 * 37.29569 * 17 16 14 19 19 C 1.36944 * 125.64298 * 155.81819 * 18 17 16 20 20 H 1.08005 * 119.99361 * 188.10828 * 19 18 17 21 21 C 1.38807 * 120.00503 * 8.10416 * 19 18 17 22 22 N 1.31621 * 119.99612 * 28.84262 * 21 19 18 23 23 Si 1.86800 * 120.00358 * 208.84553 * 21 19 18 24 24 H 1.48500 * 109.46983 * 59.99841 * 23 21 19 25 25 H 1.48498 * 109.46893 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.46814 * 299.99964 * 23 21 19 27 27 C 1.47019 * 108.70493 * 335.55282 * 18 17 16 28 28 C 1.53043 * 109.53921 * 61.35882 * 13 12 11 29 29 C 1.46928 * 120.63320 * 355.42844 * 10 8 7 30 30 H 1.09003 * 109.47237 * 60.00248 * 1 2 3 31 31 H 1.09007 * 109.47156 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47636 * 300.00141 * 1 2 3 33 33 H 1.09000 * 109.47095 * 240.00327 * 2 1 3 34 34 H 1.08996 * 109.47409 * 120.00093 * 2 1 3 35 35 H 1.07997 * 125.38284 * 180.02562 * 5 4 3 36 36 H 1.09007 * 109.58944 * 113.83923 * 11 10 8 37 37 H 1.09000 * 109.70224 * 353.48638 * 11 10 8 38 38 H 1.08992 * 109.50173 * 185.41066 * 12 11 10 39 39 H 1.09011 * 109.52019 * 65.33065 * 12 11 10 40 40 H 1.09004 * 109.45538 * 301.35436 * 13 12 11 41 41 H 1.09005 * 111.00693 * 324.13651 * 16 14 13 42 42 H 1.08997 * 111.00667 * 87.99096 * 16 14 13 43 43 H 1.09000 * 110.49703 * 278.45281 * 17 16 14 44 44 H 1.09002 * 110.34379 * 156.06262 * 17 16 14 45 45 H 0.96998 * 120.00486 * 6.90152 * 22 21 19 46 46 H 1.08999 * 109.87891 * 120.70602 * 27 18 17 47 47 H 1.09002 * 109.88336 * 241.71533 * 27 18 17 48 48 H 1.08997 * 109.49546 * 58.58889 * 28 13 12 49 49 H 1.08998 * 109.49178 * 178.68545 * 28 13 12 50 50 H 1.08998 * 109.59317 * 246.15928 * 29 10 8 51 51 H 1.09003 * 109.58401 * 6.58629 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 8 2.2993 2.1740 -1.0788 5 6 2.7238 3.3738 -0.6580 6 7 2.7253 3.3960 0.6412 7 6 2.3021 2.1845 1.0937 8 6 2.1570 1.7779 2.5033 9 8 1.8586 0.6313 2.7777 10 7 2.3551 2.6768 3.4877 11 6 2.1170 2.3143 4.8915 12 6 1.1571 3.3362 5.5087 13 6 1.7215 4.7449 5.3103 14 6 0.7823 5.7658 5.9558 15 1 -0.1998 5.7364 5.4841 16 6 1.3841 7.1940 5.8825 17 6 0.7017 7.8793 7.0955 18 7 0.6396 6.8322 8.1312 19 6 0.5635 7.0486 9.4813 20 1 0.6541 6.2192 10.1671 21 6 0.3701 8.3340 9.9684 22 7 -0.2824 9.2201 9.2463 23 14 1.0358 8.8061 11.6487 24 1 2.5109 8.6354 11.6625 25 1 0.6983 10.2238 11.9343 26 1 0.4269 7.9343 12.6852 27 6 0.6663 5.5171 7.4744 28 6 1.8452 5.0407 3.8138 29 6 2.8129 4.0380 3.1775 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.8932 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 3.0141 4.1941 -1.2976 36 1 3.0609 2.3239 5.4366 37 1 1.6749 1.3194 4.9442 38 1 1.0474 3.1350 6.5742 39 1 0.1843 3.2622 5.0224 40 1 2.7049 4.8109 5.7758 41 1 2.4672 7.1684 6.0024 42 1 1.1073 7.6873 4.9507 43 1 -0.3023 8.2115 6.8311 44 1 1.3015 8.7208 7.4422 45 1 -0.7140 8.9499 8.4207 46 1 1.5266 4.9460 7.8234 47 1 -0.2528 4.9741 7.6943 48 1 0.8663 4.9505 3.3431 49 1 2.2252 6.0526 3.6733 50 1 3.8135 4.1884 3.5828 51 1 2.8288 4.1808 2.0970 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039121685.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:00:46 Heat of formation + Delta-G solvation = -10.324154 kcal Electronic energy + Delta-G solvation = -31273.192259 eV Core-core repulsion = 27173.897790 eV Total energy + Delta-G solvation = -4099.294469 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -44.52436 -41.24246 -39.90297 -38.13246 -36.15019 -35.40813 -35.05209 -33.48656 -32.23631 -30.89885 -30.39729 -29.37267 -26.84368 -26.14114 -25.00337 -24.34359 -24.19563 -22.75607 -21.98368 -21.74350 -20.89303 -20.42259 -19.62012 -18.67884 -17.92683 -17.58921 -16.89176 -16.61926 -16.44995 -16.08642 -15.93066 -15.66716 -15.56682 -15.22303 -15.03661 -14.84787 -14.56948 -14.50162 -14.36027 -14.27403 -13.79374 -13.63104 -13.42801 -13.15101 -12.86550 -12.63232 -12.61214 -12.50702 -12.43159 -12.41354 -12.22875 -12.11694 -11.91652 -11.84346 -11.68672 -11.58257 -11.46726 -11.29007 -11.16794 -10.57242 -10.42729 -10.08107 -9.62533 -9.05180 -8.35838 -5.29200 0.02252 1.00754 1.53480 1.55455 1.63868 1.83132 1.93780 2.17349 2.63842 3.00395 3.15828 3.50197 3.51393 3.58718 3.64849 3.70320 3.84661 4.01784 4.06660 4.12476 4.21105 4.25781 4.27069 4.35356 4.38445 4.44043 4.49726 4.52603 4.56254 4.70530 4.75018 4.80278 4.83660 4.87268 4.91919 4.92695 4.98950 5.01809 5.03987 5.10110 5.13822 5.21921 5.23901 5.26587 5.33083 5.43246 5.53626 5.62474 5.78972 6.24030 6.29699 6.49747 6.89242 7.00205 7.71177 8.29042 8.98144 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.025334 B = 0.002108 C = 0.002031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.951895 B =13277.784772 C =13783.875318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.048 4.048 3 C 0.048 3.952 4 O -0.195 6.195 5 C 0.202 3.798 6 N -0.487 5.487 7 C -0.097 4.097 8 C 0.592 3.408 9 O -0.566 6.566 10 N -0.592 5.592 11 C 0.115 3.885 12 C -0.122 4.122 13 C -0.065 4.065 14 C -0.076 4.076 15 H 0.070 0.930 16 C -0.111 4.111 17 C 0.144 3.856 18 N -0.631 5.631 19 C -0.348 4.348 20 H 0.062 0.938 21 C -0.082 4.082 22 N -0.949 5.949 23 Si 1.115 2.885 24 H -0.280 1.280 25 H -0.290 1.290 26 H -0.275 1.275 27 C 0.140 3.860 28 C -0.114 4.114 29 C 0.062 3.938 30 H 0.065 0.935 31 H 0.086 0.914 32 H 0.038 0.962 33 H 0.110 0.890 34 H 0.102 0.898 35 H 0.306 0.694 36 H 0.077 0.923 37 H 0.084 0.916 38 H 0.075 0.925 39 H 0.058 0.942 40 H 0.072 0.928 41 H 0.073 0.927 42 H 0.091 0.909 43 H -0.001 1.001 44 H 0.020 0.980 45 H 0.255 0.745 46 H 0.030 0.970 47 H 0.007 0.993 48 H 0.056 0.944 49 H 0.088 0.912 50 H 0.065 0.935 51 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.799 -16.176 -26.689 32.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.085 4.085 3 C -0.009 4.009 4 O -0.081 6.081 5 C -0.025 4.025 6 N -0.215 5.215 7 C -0.215 4.215 8 C 0.381 3.619 9 O -0.447 6.447 10 N -0.322 5.322 11 C -0.007 4.007 12 C -0.160 4.160 13 C -0.084 4.084 14 C -0.095 4.095 15 H 0.088 0.912 16 C -0.149 4.149 17 C 0.019 3.981 18 N -0.359 5.359 19 C -0.476 4.476 20 H 0.080 0.920 21 C -0.277 4.277 22 N -0.593 5.593 23 Si 0.938 3.062 24 H -0.207 1.207 25 H -0.216 1.216 26 H -0.201 1.201 27 C 0.015 3.985 28 C -0.152 4.152 29 C -0.060 4.060 30 H 0.084 0.916 31 H 0.105 0.895 32 H 0.057 0.943 33 H 0.129 0.871 34 H 0.121 0.879 35 H 0.320 0.680 36 H 0.095 0.905 37 H 0.103 0.897 38 H 0.093 0.907 39 H 0.077 0.923 40 H 0.090 0.910 41 H 0.092 0.908 42 H 0.109 0.891 43 H 0.017 0.983 44 H 0.039 0.961 45 H 0.066 0.934 46 H 0.048 0.952 47 H 0.025 0.975 48 H 0.075 0.925 49 H 0.106 0.894 50 H 0.084 0.916 51 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 8.010 -15.022 -25.000 30.246 hybrid contribution -0.838 -1.313 -0.710 1.712 sum 7.172 -16.335 -25.710 31.293 Atomic orbital electron populations 1.21682 0.92666 1.03774 1.01672 1.20460 0.97319 0.84769 1.06001 1.24005 0.97704 0.96026 0.83137 1.84427 1.63525 1.24623 1.35567 1.29368 0.95055 0.86986 0.91096 1.70106 1.20225 1.20118 1.11063 1.21313 1.12688 0.92587 0.94917 1.17109 0.76728 0.84488 0.83568 1.90735 1.51073 1.19286 1.83571 1.48014 1.64629 1.13404 1.06191 1.21633 0.99820 0.99049 0.80221 1.21897 0.98602 0.94355 1.01157 1.21062 0.98188 0.92977 0.96184 1.22063 0.99058 0.95015 0.93401 0.91192 1.22793 0.99860 0.95177 0.97064 1.21545 0.95752 0.91742 0.89084 1.44951 1.86868 1.02003 1.02053 1.20076 1.48949 0.96332 0.82280 0.92038 1.27116 0.98954 0.93067 1.08520 1.70887 1.32586 1.38527 1.17264 0.82877 0.76302 0.75641 0.71335 1.20677 1.21600 1.20076 1.21475 0.97131 0.87234 0.92637 1.21842 0.99896 0.99919 0.93575 1.23159 0.96521 0.78500 1.07775 0.91614 0.89477 0.94265 0.87137 0.87939 0.67971 0.90450 0.89744 0.90693 0.92286 0.91002 0.90846 0.89079 0.98323 0.96115 0.93410 0.95226 0.97538 0.92471 0.89387 0.91628 0.82189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 9.89 71.98 0.71 -1.13 16 2 C -0.05 -0.67 5.99 29.84 0.18 -0.49 16 3 C 0.05 0.82 6.69 25.19 0.17 0.99 16 4 O -0.20 -2.44 10.73 0.37 0.00 -2.43 16 5 C 0.20 1.80 13.19 130.52 1.72 3.52 16 6 N -0.49 -8.08 7.67 -305.14 -2.34 -10.42 16 7 C -0.10 -2.05 6.75 40.41 0.27 -1.77 16 8 C 0.59 15.27 7.69 86.66 0.67 15.93 16 9 O -0.57 -16.67 14.22 -4.08 -0.06 -16.73 16 10 N -0.59 -14.23 2.97 -822.77 -2.45 -16.68 16 11 C 0.11 2.73 6.42 86.36 0.55 3.29 16 12 C -0.12 -3.07 5.17 30.67 0.16 -2.91 16 13 C -0.07 -1.69 1.53 -10.76 -0.02 -1.70 16 14 C -0.08 -2.52 2.48 -9.61 -0.02 -2.55 16 15 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 16 C -0.11 -3.87 5.62 32.07 0.18 -3.69 16 17 C 0.14 7.08 5.18 86.93 0.45 7.53 16 18 N -0.63 -33.89 3.36 -691.56 -2.32 -36.21 16 19 C -0.35 -20.75 10.05 84.03 0.84 -19.90 16 20 H 0.06 3.63 7.98 -2.91 -0.02 3.61 16 21 C -0.08 -4.88 5.08 84.86 0.43 -4.45 16 22 N -0.95 -60.47 12.65 21.65 0.27 -60.19 16 23 Si 1.11 52.90 30.01 68.60 2.06 54.96 16 24 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 25 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 26 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 27 C 0.14 6.00 5.83 86.73 0.51 6.51 16 28 C -0.11 -2.48 5.21 30.67 0.16 -2.32 16 29 C 0.06 1.29 6.33 86.36 0.55 1.84 16 30 H 0.06 0.72 8.14 -2.39 -0.02 0.71 16 31 H 0.09 0.86 8.14 -2.38 -0.02 0.84 16 32 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.10 1.81 6.38 -2.39 -0.02 1.80 16 35 H 0.31 -1.00 8.06 -2.91 -0.02 -1.02 16 36 H 0.08 1.70 8.14 -2.38 -0.02 1.68 16 37 H 0.08 2.13 7.04 -2.39 -0.02 2.11 16 38 H 0.07 1.97 7.11 -2.39 -0.02 1.95 16 39 H 0.06 1.55 8.14 -2.38 -0.02 1.53 16 40 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 41 H 0.07 2.46 8.05 -2.38 -0.02 2.44 16 42 H 0.09 2.65 8.10 -2.39 -0.02 2.63 16 43 H 0.00 -0.05 6.99 -2.39 -0.02 -0.07 16 44 H 0.02 1.13 7.46 -2.39 -0.02 1.11 16 45 H 0.26 16.49 5.86 -92.71 -0.54 15.95 16 46 H 0.03 1.24 7.57 -2.39 -0.02 1.23 16 47 H 0.01 0.29 8.14 -2.39 -0.02 0.28 16 48 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 49 H 0.09 1.74 7.38 -2.39 -0.02 1.72 16 50 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 51 H 0.16 3.16 3.61 -59.44 -0.21 2.95 16 Total: -1.00 -79.23 393.15 3.63 -75.61 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: 0.94 Total: 13.42 kcal Atomic # 6 Polarization: -8.83 SS G_CDS: 7.51 Total: -1.32 kcal Atomic # 7 Polarization: -116.66 SS G_CDS: -6.83 Total: -123.49 kcal Atomic # 8 Polarization: -19.11 SS G_CDS: -0.05 Total: -19.16 kcal Atomic # 14 Polarization: 52.90 SS G_CDS: 2.06 Total: 54.96 kcal Total: -79.23 3.63 -75.61 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039121685.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.281 kcal (2) G-P(sol) polarization free energy of solvation -79.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds