Wall clock time and date at job start Wed Apr 1 2020 05:51:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50705 * 109.46988 * 2 1 4 4 N 1.30010 * 127.33158 * 270.14608 * 3 2 1 5 5 O 1.20658 * 112.29830 * 180.30513 * 4 3 2 6 6 C 1.33490 * 113.15675 * 359.71001 * 5 4 3 7 7 C 1.37360 * 106.34300 * 0.02562 * 6 5 4 8 8 C 1.47392 * 128.56483 * 179.97438 * 7 6 5 9 9 O 1.21616 * 120.00187 * 145.01621 * 8 7 6 10 10 N 1.34777 * 120.00085 * 325.01101 * 8 7 6 11 11 C 1.46929 * 120.62927 * 174.74208 * 10 8 7 12 12 C 1.53198 * 108.77656 * 126.37442 * 11 10 8 13 13 C 1.53036 * 109.31286 * 54.63004 * 12 11 10 14 14 C 1.53000 * 109.45615 * 178.62057 * 13 12 11 15 15 H 1.08994 * 110.89205 * 59.29940 * 14 13 12 16 16 C 1.55154 * 111.00394 * 183.18044 * 14 13 12 17 17 C 1.54330 * 102.94597 * 153.57320 * 16 14 13 18 18 N 1.47026 * 107.26582 * 337.80755 * 17 16 14 19 19 C 1.36939 * 125.64294 * 178.89862 * 18 17 16 20 20 H 1.07996 * 119.99764 * 186.14516 * 19 18 17 21 21 C 1.38808 * 120.00246 * 6.15374 * 19 18 17 22 22 N 1.31617 * 119.99932 * 353.14943 * 21 19 18 23 23 Si 1.86796 * 120.00155 * 173.15283 * 21 19 18 24 24 H 1.48505 * 109.47205 * 94.98113 * 23 21 19 25 25 H 1.48497 * 109.47426 * 214.98276 * 23 21 19 26 26 H 1.48502 * 109.47142 * 334.98161 * 23 21 19 27 27 C 1.47464 * 108.72318 * 358.97232 * 18 17 16 28 28 C 1.53040 * 109.53930 * 298.63755 * 13 12 11 29 29 C 1.46926 * 120.63080 * 354.71961 * 10 8 7 30 30 H 1.09004 * 109.47128 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47497 * 299.99984 * 1 2 3 32 32 H 1.08999 * 109.47214 * 60.00104 * 1 2 3 33 33 H 1.08995 * 109.47497 * 240.00016 * 2 1 3 34 34 H 1.08999 * 109.47214 * 119.99895 * 2 1 3 35 35 H 1.08000 * 126.82951 * 180.02562 * 6 5 4 36 36 H 1.09000 * 109.58974 * 6.57996 * 11 10 8 37 37 H 1.09003 * 109.58678 * 246.15665 * 11 10 8 38 38 H 1.09005 * 109.48924 * 294.68140 * 12 11 10 39 39 H 1.09000 * 109.49712 * 174.58881 * 12 11 10 40 40 H 1.08994 * 109.46202 * 58.65645 * 13 12 11 41 41 H 1.09000 * 110.72350 * 271.93682 * 16 14 13 42 42 H 1.09004 * 110.72266 * 35.21025 * 16 14 13 43 43 H 1.08997 * 109.88174 * 97.22569 * 17 16 14 44 44 H 1.08998 * 109.88557 * 218.39164 * 17 16 14 45 45 H 0.97006 * 120.00022 * 180.02562 * 22 21 19 46 46 H 1.08994 * 110.35176 * 265.25152 * 27 18 17 47 47 H 1.09006 * 110.40076 * 142.91492 * 27 18 17 48 48 H 1.09004 * 109.49605 * 181.32171 * 28 13 12 49 49 H 1.09006 * 109.49823 * 301.41625 * 28 13 12 50 50 H 1.09000 * 109.58723 * 353.41369 * 29 10 8 51 51 H 1.08990 * 109.58817 * 113.84399 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2926 2.1651 -1.0338 5 8 2.6874 3.2615 -0.7208 6 6 2.7523 3.4386 0.6007 7 6 2.3301 2.2618 1.1696 8 6 2.2105 1.9233 2.5991 9 8 1.3095 1.2005 2.9796 10 7 3.0997 2.4148 3.4847 11 6 2.9285 2.1816 4.9253 12 6 4.2167 1.5669 5.4818 13 6 5.4017 2.4681 5.1273 14 6 6.6855 1.8749 5.7112 15 1 6.8641 0.8735 5.3197 16 6 7.8997 2.8023 5.4409 17 6 8.8611 2.4594 6.5985 18 7 8.0523 1.8772 7.6795 19 6 8.5324 1.4198 8.8776 20 1 7.8709 0.9181 9.5682 21 6 9.8692 1.6013 9.2046 22 7 10.7044 2.0899 8.3124 23 14 10.4828 1.1519 10.9107 24 1 11.0411 -0.2240 10.8895 25 1 11.5403 2.1089 11.3244 26 1 9.3548 1.2136 11.8746 27 6 6.6388 1.8656 7.2595 28 6 5.5320 2.5674 3.6057 29 6 4.2589 3.1935 3.0280 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 3.0731 4.3299 1.1194 36 1 2.0965 1.4964 5.0882 37 1 2.7287 3.1282 5.4275 38 1 4.3669 0.5796 5.0448 39 1 4.1387 1.4777 6.5653 40 1 5.2392 3.4622 5.5435 41 1 8.3561 2.5696 4.4788 42 1 7.6020 3.8500 5.4843 43 1 9.6044 1.7371 6.2613 44 1 9.3545 3.3651 6.9512 45 1 11.6387 2.2164 8.5407 46 1 6.1263 2.7538 7.6289 47 1 6.1431 0.9637 7.6187 48 1 6.3904 3.1904 3.3540 49 1 5.6699 1.5707 3.1865 50 1 4.3047 3.1760 1.9391 51 1 4.1676 4.2225 3.3754 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039154103.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:51:07 Heat of formation + Delta-G solvation = 42.187563 kcal Electronic energy + Delta-G solvation = -31088.640903 eV Core-core repulsion = 26991.623513 eV Total energy + Delta-G solvation = -4097.017390 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -45.29884 -40.44777 -38.48159 -36.72475 -35.56367 -34.03081 -32.85681 -31.70151 -31.55938 -31.12025 -29.20983 -27.90333 -25.84802 -25.07691 -24.47401 -23.46511 -23.24298 -21.27077 -21.18293 -19.92443 -19.74337 -19.50515 -18.14423 -17.82726 -17.14534 -16.81545 -16.41154 -15.55680 -15.05174 -14.98825 -14.65005 -14.47147 -14.28274 -14.21099 -13.94085 -13.73957 -13.56400 -13.17727 -13.03192 -12.82480 -12.53827 -12.27252 -12.05847 -11.96496 -11.89152 -11.77919 -11.45813 -11.22386 -11.11793 -11.06704 -10.91484 -10.72603 -10.60822 -10.43427 -10.27532 -10.11325 -10.06048 -9.85983 -9.79147 -9.74376 -9.58642 -8.89271 -8.56767 -6.80541 -5.71766 -3.03675 0.73178 1.45137 2.35076 2.66657 2.87216 3.39592 3.45232 3.47222 3.63313 3.90054 4.24200 4.48584 4.49535 4.53102 4.72783 4.75669 4.81417 4.91248 4.95693 5.01343 5.07606 5.08265 5.16867 5.32661 5.46649 5.49082 5.52741 5.55046 5.56597 5.60151 5.64778 5.75929 5.76337 5.85653 5.93439 5.94898 5.96556 6.09026 6.13916 6.30096 6.34370 6.42963 6.55465 6.59311 6.75958 6.99183 7.03988 7.57176 7.65324 7.78281 7.83401 7.84467 8.27665 9.23243 9.84231 10.51176 11.40402 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.024301 B = 0.002055 C = 0.001981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.918601 B =13622.605925 C =14132.130131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.045 4.045 3 C 0.069 3.931 4 N -0.356 5.356 5 O 0.098 5.902 6 C -0.013 4.013 7 C -0.245 4.245 8 C 0.595 3.405 9 O -0.528 6.528 10 N -0.601 5.601 11 C 0.114 3.886 12 C -0.130 4.130 13 C -0.073 4.073 14 C -0.097 4.097 15 H 0.071 0.929 16 C -0.138 4.138 17 C 0.176 3.824 18 N -0.607 5.607 19 C -0.228 4.228 20 H 0.077 0.923 21 C -0.009 4.009 22 N -0.921 5.921 23 Si 0.909 3.091 24 H -0.290 1.290 25 H -0.290 1.290 26 H -0.281 1.281 27 C 0.143 3.857 28 C -0.128 4.128 29 C 0.094 3.906 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.053 0.947 33 H 0.083 0.917 34 H 0.091 0.909 35 H 0.228 0.772 36 H 0.093 0.907 37 H 0.071 0.929 38 H 0.066 0.934 39 H 0.082 0.918 40 H 0.073 0.927 41 H 0.056 0.944 42 H 0.055 0.945 43 H 0.039 0.961 44 H 0.043 0.957 45 H 0.251 0.749 46 H 0.017 0.983 47 H 0.035 0.965 48 H 0.082 0.918 49 H 0.066 0.934 50 H 0.084 0.916 51 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.767 3.412 -17.370 25.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.083 4.083 3 C -0.093 4.093 4 N -0.062 5.062 5 O 0.038 5.962 6 C -0.095 4.095 7 C -0.252 4.252 8 C 0.382 3.618 9 O -0.405 6.405 10 N -0.334 5.334 11 C -0.008 4.008 12 C -0.168 4.168 13 C -0.092 4.092 14 C -0.116 4.116 15 H 0.089 0.911 16 C -0.176 4.176 17 C 0.052 3.948 18 N -0.334 5.334 19 C -0.356 4.356 20 H 0.095 0.905 21 C -0.205 4.205 22 N -0.568 5.568 23 Si 0.739 3.261 24 H -0.217 1.217 25 H -0.217 1.217 26 H -0.206 1.206 27 C 0.016 3.984 28 C -0.166 4.166 29 C -0.028 4.028 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.072 0.928 33 H 0.102 0.898 34 H 0.109 0.891 35 H 0.244 0.756 36 H 0.111 0.889 37 H 0.089 0.911 38 H 0.085 0.915 39 H 0.101 0.899 40 H 0.091 0.909 41 H 0.075 0.925 42 H 0.074 0.926 43 H 0.058 0.942 44 H 0.061 0.939 45 H 0.062 0.938 46 H 0.035 0.965 47 H 0.053 0.947 48 H 0.100 0.900 49 H 0.085 0.915 50 H 0.102 0.898 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -18.094 2.866 -18.352 25.931 hybrid contribution 0.664 -0.110 1.796 1.918 sum -17.431 2.757 -16.556 24.198 Atomic orbital electron populations 1.21693 0.93321 1.02589 1.02614 1.19988 0.97063 0.87200 1.04017 1.24866 0.99276 0.98942 0.86234 1.73669 1.16339 0.92666 1.23518 1.84589 1.61763 1.26841 1.23009 1.26549 0.98538 1.00475 0.83926 1.22317 1.11502 0.95752 0.95674 1.16885 0.81888 0.79856 0.83149 1.90802 1.33946 1.36474 1.79278 1.47982 1.24650 1.53555 1.07213 1.21733 0.99398 1.01481 0.78167 1.22000 0.93503 0.99478 1.01796 1.21099 0.94656 0.99349 0.94144 1.22353 0.93195 0.98918 0.97133 0.91086 1.22898 0.96888 0.98129 0.99693 1.21138 0.91011 0.97711 0.84980 1.44503 1.00602 1.72540 1.15707 1.19054 0.93487 1.30655 0.92417 0.90550 1.24819 0.96189 1.01372 0.98126 1.69985 1.03322 1.51018 1.32498 0.86143 0.78367 0.77537 0.84007 1.21719 1.21655 1.20646 1.21558 0.87985 0.97672 0.91147 1.21971 0.96414 1.01859 0.96391 1.22142 0.85492 0.95246 0.99959 0.91502 0.91405 0.92751 0.89841 0.89070 0.75578 0.88869 0.91075 0.91496 0.89923 0.90897 0.92546 0.92617 0.94229 0.93888 0.93830 0.96530 0.94720 0.89993 0.91493 0.89786 0.90658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 9.89 37.16 0.37 -0.85 16 2 C -0.04 -0.40 6.54 -27.88 -0.18 -0.59 16 3 C 0.07 0.72 6.84 -79.77 -0.55 0.17 16 4 N -0.36 -3.76 12.01 34.78 0.42 -3.34 16 5 O 0.10 0.85 11.06 18.66 0.21 1.06 16 6 C -0.01 -0.09 9.97 30.41 0.30 0.22 16 7 C -0.25 -2.36 5.70 -102.90 -0.59 -2.95 16 8 C 0.59 6.68 7.66 -12.53 -0.10 6.59 16 9 O -0.53 -7.50 16.52 5.26 0.09 -7.41 16 10 N -0.60 -5.75 2.97 -174.04 -0.52 -6.27 16 11 C 0.11 1.12 6.44 -3.71 -0.02 1.10 16 12 C -0.13 -1.42 5.21 -26.61 -0.14 -1.56 16 13 C -0.07 -0.85 1.65 -90.58 -0.15 -1.00 16 14 C -0.10 -1.52 2.56 -88.47 -0.23 -1.75 16 15 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 16 C -0.14 -2.38 5.42 -24.89 -0.13 -2.52 16 17 C 0.18 4.21 5.38 -3.06 -0.02 4.19 16 18 N -0.61 -15.37 3.40 -170.04 -0.58 -15.95 16 19 C -0.23 -6.36 10.26 -15.06 -0.15 -6.51 16 20 H 0.08 2.06 7.84 -52.49 -0.41 1.65 16 21 C -0.01 -0.25 5.48 -17.43 -0.10 -0.35 16 22 N -0.92 -27.10 10.36 55.49 0.58 -26.52 16 23 Si 0.91 22.10 29.56 -169.99 -5.02 17.08 16 24 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 25 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 26 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 27 C 0.14 2.81 5.80 -2.51 -0.01 2.80 16 28 C -0.13 -1.21 5.20 -26.61 -0.14 -1.35 16 29 C 0.09 0.69 5.50 -3.71 -0.02 0.67 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.23 0.58 7.03 -52.49 -0.37 0.22 16 36 H 0.09 1.01 6.99 -51.93 -0.36 0.65 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 39 H 0.08 0.93 7.32 -51.93 -0.38 0.55 16 40 H 0.07 0.84 8.13 -51.93 -0.42 0.42 16 41 H 0.06 0.88 8.09 -51.93 -0.42 0.46 16 42 H 0.06 0.89 8.04 -51.93 -0.42 0.48 16 43 H 0.04 1.05 7.55 -51.93 -0.39 0.66 16 44 H 0.04 1.14 7.37 -51.93 -0.38 0.76 16 45 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 46 H 0.02 0.33 8.03 -51.93 -0.42 -0.09 16 47 H 0.03 0.68 8.03 -51.93 -0.42 0.26 16 48 H 0.08 0.74 7.32 -51.93 -0.38 0.36 16 49 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 50 H 0.08 0.50 4.50 -51.93 -0.23 0.27 16 51 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 398.67 15.07 6.01 6.01 Total: -1.00 -33.49 398.67 -9.05 -42.53 By element: Atomic # 1 Polarization: 4.87 SS G_CDS: -8.37 Total: -3.50 kcal Atomic # 6 Polarization: -1.82 SS G_CDS: -1.85 Total: -3.68 kcal Atomic # 7 Polarization: -51.98 SS G_CDS: -0.10 Total: -52.09 kcal Atomic # 8 Polarization: -6.65 SS G_CDS: 0.29 Total: -6.36 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -33.49 -9.05 -42.53 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039154103.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.722 kcal (2) G-P(sol) polarization free energy of solvation -33.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.535 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds