Wall clock time and date at job start Wed Apr 1 2020 05:51:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50705 * 109.46988 * 2 1 4 4 N 1.30010 * 127.33158 * 270.14608 * 3 2 1 5 5 O 1.20658 * 112.29830 * 180.30513 * 4 3 2 6 6 C 1.33490 * 113.15675 * 359.71001 * 5 4 3 7 7 C 1.37360 * 106.34300 * 0.02562 * 6 5 4 8 8 C 1.47392 * 128.56483 * 179.97438 * 7 6 5 9 9 O 1.21616 * 120.00187 * 145.01621 * 8 7 6 10 10 N 1.34777 * 120.00085 * 325.01101 * 8 7 6 11 11 C 1.46929 * 120.62927 * 174.74208 * 10 8 7 12 12 C 1.53198 * 108.77656 * 126.37442 * 11 10 8 13 13 C 1.53036 * 109.31286 * 54.63004 * 12 11 10 14 14 C 1.53000 * 109.45615 * 178.62057 * 13 12 11 15 15 H 1.08994 * 110.89205 * 59.29940 * 14 13 12 16 16 C 1.55154 * 111.00394 * 183.18044 * 14 13 12 17 17 C 1.54330 * 102.94597 * 153.57320 * 16 14 13 18 18 N 1.47026 * 107.26582 * 337.80755 * 17 16 14 19 19 C 1.36939 * 125.64294 * 178.89862 * 18 17 16 20 20 H 1.07996 * 119.99764 * 186.14516 * 19 18 17 21 21 C 1.38808 * 120.00246 * 6.15374 * 19 18 17 22 22 N 1.31617 * 119.99932 * 353.14943 * 21 19 18 23 23 Si 1.86796 * 120.00155 * 173.15283 * 21 19 18 24 24 H 1.48505 * 109.47205 * 94.98113 * 23 21 19 25 25 H 1.48497 * 109.47426 * 214.98276 * 23 21 19 26 26 H 1.48502 * 109.47142 * 334.98161 * 23 21 19 27 27 C 1.47464 * 108.72318 * 358.97232 * 18 17 16 28 28 C 1.53040 * 109.53930 * 298.63755 * 13 12 11 29 29 C 1.46926 * 120.63080 * 354.71961 * 10 8 7 30 30 H 1.09004 * 109.47128 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47497 * 299.99984 * 1 2 3 32 32 H 1.08999 * 109.47214 * 60.00104 * 1 2 3 33 33 H 1.08995 * 109.47497 * 240.00016 * 2 1 3 34 34 H 1.08999 * 109.47214 * 119.99895 * 2 1 3 35 35 H 1.08000 * 126.82951 * 180.02562 * 6 5 4 36 36 H 1.09000 * 109.58974 * 6.57996 * 11 10 8 37 37 H 1.09003 * 109.58678 * 246.15665 * 11 10 8 38 38 H 1.09005 * 109.48924 * 294.68140 * 12 11 10 39 39 H 1.09000 * 109.49712 * 174.58881 * 12 11 10 40 40 H 1.08994 * 109.46202 * 58.65645 * 13 12 11 41 41 H 1.09000 * 110.72350 * 271.93682 * 16 14 13 42 42 H 1.09004 * 110.72266 * 35.21025 * 16 14 13 43 43 H 1.08997 * 109.88174 * 97.22569 * 17 16 14 44 44 H 1.08998 * 109.88557 * 218.39164 * 17 16 14 45 45 H 0.97006 * 120.00022 * 180.02562 * 22 21 19 46 46 H 1.08994 * 110.35176 * 265.25152 * 27 18 17 47 47 H 1.09006 * 110.40076 * 142.91492 * 27 18 17 48 48 H 1.09004 * 109.49605 * 181.32171 * 28 13 12 49 49 H 1.09006 * 109.49823 * 301.41625 * 28 13 12 50 50 H 1.09000 * 109.58723 * 353.41369 * 29 10 8 51 51 H 1.08990 * 109.58817 * 113.84399 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2926 2.1651 -1.0338 5 8 2.6874 3.2615 -0.7208 6 6 2.7523 3.4386 0.6007 7 6 2.3301 2.2618 1.1696 8 6 2.2105 1.9233 2.5991 9 8 1.3095 1.2005 2.9796 10 7 3.0997 2.4148 3.4847 11 6 2.9285 2.1816 4.9253 12 6 4.2167 1.5669 5.4818 13 6 5.4017 2.4681 5.1273 14 6 6.6855 1.8749 5.7112 15 1 6.8641 0.8735 5.3197 16 6 7.8997 2.8023 5.4409 17 6 8.8611 2.4594 6.5985 18 7 8.0523 1.8772 7.6795 19 6 8.5324 1.4198 8.8776 20 1 7.8709 0.9181 9.5682 21 6 9.8692 1.6013 9.2046 22 7 10.7044 2.0899 8.3124 23 14 10.4828 1.1519 10.9107 24 1 11.0411 -0.2240 10.8895 25 1 11.5403 2.1089 11.3244 26 1 9.3548 1.2136 11.8746 27 6 6.6388 1.8656 7.2595 28 6 5.5320 2.5674 3.6057 29 6 4.2589 3.1935 3.0280 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 3.0731 4.3299 1.1194 36 1 2.0965 1.4964 5.0882 37 1 2.7287 3.1282 5.4275 38 1 4.3669 0.5796 5.0448 39 1 4.1387 1.4777 6.5653 40 1 5.2392 3.4622 5.5435 41 1 8.3561 2.5696 4.4788 42 1 7.6020 3.8500 5.4843 43 1 9.6044 1.7371 6.2613 44 1 9.3545 3.3651 6.9512 45 1 11.6387 2.2164 8.5407 46 1 6.1263 2.7538 7.6289 47 1 6.1431 0.9637 7.6187 48 1 6.3904 3.1904 3.3540 49 1 5.6699 1.5707 3.1865 50 1 4.3047 3.1760 1.9391 51 1 4.1676 4.2225 3.3754 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039154103.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:51:06 Heat of formation + Delta-G solvation = 22.524140 kcal Electronic energy + Delta-G solvation = -31089.493573 eV Core-core repulsion = 26991.623513 eV Total energy + Delta-G solvation = -4097.870060 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -45.98721 -41.27373 -39.71021 -37.95606 -36.26221 -35.32174 -33.97405 -33.06222 -32.26158 -31.88224 -30.89924 -29.31348 -27.10389 -26.25527 -25.41186 -24.52177 -24.10752 -22.14258 -21.95139 -21.67387 -20.88854 -20.43412 -18.85700 -18.81658 -18.52955 -17.86802 -17.17665 -16.79392 -16.43134 -16.05452 -15.79369 -15.67643 -15.33666 -15.12434 -14.97615 -14.58357 -14.41242 -14.17006 -14.05579 -13.83651 -13.77240 -13.66629 -13.43953 -13.25580 -12.87556 -12.76347 -12.67831 -12.55002 -12.29397 -12.23076 -12.14038 -12.01602 -11.91504 -11.80622 -11.60139 -11.32891 -11.27235 -11.09875 -11.03502 -10.97445 -10.67613 -10.58879 -9.67520 -8.85992 -7.85883 -5.19468 0.13265 0.72959 1.44623 1.45968 1.55572 1.64041 1.96204 2.26408 2.49560 2.95872 3.27883 3.32183 3.56970 3.63998 3.73866 3.85850 3.87973 3.94824 4.12755 4.17789 4.23974 4.27761 4.31681 4.34105 4.44420 4.46966 4.49521 4.56554 4.64396 4.75904 4.80784 4.82156 4.87372 4.91584 4.93112 5.01188 5.05531 5.05695 5.07606 5.14544 5.21308 5.24273 5.32851 5.44954 5.46618 5.56876 5.62832 5.74938 5.81147 6.22293 6.29979 7.01586 7.12062 7.20161 7.81007 8.45544 9.24963 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.024301 B = 0.002055 C = 0.001981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.918601 B =13622.605925 C =14132.130131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.046 4.046 3 C 0.054 3.946 4 N -0.376 5.376 5 O 0.100 5.900 6 C 0.021 3.979 7 C -0.273 4.273 8 C 0.594 3.406 9 O -0.569 6.569 10 N -0.597 5.597 11 C 0.118 3.882 12 C -0.125 4.125 13 C -0.063 4.063 14 C -0.079 4.079 15 H 0.059 0.941 16 C -0.120 4.120 17 C 0.180 3.820 18 N -0.632 5.632 19 C -0.242 4.242 20 H 0.079 0.921 21 C -0.069 4.069 22 N -0.950 5.950 23 Si 0.976 3.024 24 H -0.288 1.288 25 H -0.293 1.293 26 H -0.268 1.268 27 C 0.137 3.863 28 C -0.126 4.126 29 C 0.094 3.906 30 H 0.080 0.920 31 H 0.048 0.952 32 H 0.055 0.945 33 H 0.093 0.907 34 H 0.081 0.919 35 H 0.274 0.726 36 H 0.078 0.922 37 H 0.092 0.908 38 H 0.051 0.949 39 H 0.077 0.923 40 H 0.086 0.914 41 H 0.078 0.922 42 H 0.078 0.922 43 H -0.001 1.001 44 H 0.006 0.994 45 H 0.246 0.754 46 H 0.028 0.972 47 H 0.032 0.968 48 H 0.095 0.905 49 H 0.053 0.947 50 H 0.102 0.898 51 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.847 5.210 -18.310 26.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.084 4.084 3 C -0.109 4.109 4 N -0.083 5.083 5 O 0.040 5.960 6 C -0.060 4.060 7 C -0.281 4.281 8 C 0.383 3.617 9 O -0.449 6.449 10 N -0.329 5.329 11 C -0.003 4.003 12 C -0.163 4.163 13 C -0.082 4.082 14 C -0.099 4.099 15 H 0.077 0.923 16 C -0.158 4.158 17 C 0.055 3.945 18 N -0.358 5.358 19 C -0.371 4.371 20 H 0.097 0.903 21 C -0.261 4.261 22 N -0.599 5.599 23 Si 0.804 3.196 24 H -0.215 1.215 25 H -0.219 1.219 26 H -0.193 1.193 27 C 0.012 3.988 28 C -0.164 4.164 29 C -0.027 4.027 30 H 0.099 0.901 31 H 0.067 0.933 32 H 0.074 0.926 33 H 0.111 0.889 34 H 0.099 0.901 35 H 0.290 0.710 36 H 0.096 0.904 37 H 0.110 0.890 38 H 0.070 0.930 39 H 0.095 0.905 40 H 0.105 0.895 41 H 0.096 0.904 42 H 0.097 0.903 43 H 0.017 0.983 44 H 0.024 0.976 45 H 0.055 0.945 46 H 0.046 0.954 47 H 0.051 0.949 48 H 0.114 0.886 49 H 0.072 0.928 50 H 0.120 0.880 51 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -19.195 4.672 -19.306 27.623 hybrid contribution 1.009 -0.682 2.117 2.442 sum -18.187 3.990 -17.189 25.341 Atomic orbital electron populations 1.21629 0.93024 1.03232 1.01662 1.20005 0.97318 0.87148 1.03960 1.25102 0.99502 0.99487 0.86766 1.73672 1.17297 0.93345 1.23956 1.84565 1.61305 1.26100 1.23982 1.27300 0.95379 1.00490 0.82843 1.22226 1.13968 0.97113 0.94744 1.17087 0.81546 0.79254 0.83832 1.90781 1.35742 1.38376 1.79996 1.48050 1.24855 1.53224 1.06800 1.21657 0.97975 1.02060 0.78657 1.21916 0.94093 0.98827 1.01451 1.21013 0.92000 0.99457 0.95711 1.22223 0.94974 0.98473 0.94204 0.92272 1.22752 0.95683 0.99670 0.97663 1.20950 0.91848 0.94796 0.86887 1.44872 1.03185 1.72344 1.15441 1.19451 0.93825 1.30222 0.93642 0.90286 1.25669 0.96567 1.02125 1.01782 1.70210 1.03145 1.52440 1.34137 0.85106 0.77804 0.76910 0.79806 1.21535 1.21935 1.19270 1.21789 0.85136 0.97851 0.94029 1.21940 0.98237 1.01837 0.94356 1.22356 0.83205 0.96112 1.01033 0.90118 0.93304 0.92552 0.88855 0.90065 0.71040 0.90364 0.88975 0.92993 0.90469 0.89526 0.90369 0.90337 0.98321 0.97580 0.94480 0.95419 0.94933 0.88628 0.92784 0.88024 0.87400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.31 9.89 71.98 0.71 -1.60 16 2 C -0.05 -0.83 6.54 29.85 0.20 -0.64 16 3 C 0.05 1.06 6.84 45.16 0.31 1.37 16 4 N -0.38 -7.37 12.01 -44.79 -0.54 -7.90 16 5 O 0.10 1.45 11.06 77.01 0.85 2.30 16 6 C 0.02 0.21 9.97 67.61 0.67 0.88 16 7 C -0.27 -4.69 5.70 -18.75 -0.11 -4.80 16 8 C 0.59 12.42 7.66 86.65 0.66 13.08 16 9 O -0.57 -16.17 16.52 -4.08 -0.07 -16.24 16 10 N -0.60 -9.70 2.97 -822.80 -2.45 -12.15 16 11 C 0.12 2.07 6.44 86.36 0.56 2.62 16 12 C -0.12 -2.50 5.21 30.67 0.16 -2.34 16 13 C -0.06 -1.25 1.65 -10.77 -0.02 -1.27 16 14 C -0.08 -2.37 2.56 -9.40 -0.02 -2.39 16 15 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 16 C -0.12 -3.92 5.42 31.78 0.17 -3.74 16 17 C 0.18 8.80 5.38 86.73 0.47 9.27 16 18 N -0.63 -32.49 3.40 -691.88 -2.35 -34.84 16 19 C -0.24 -13.76 10.26 84.03 0.86 -12.89 16 20 H 0.08 4.31 7.84 -2.91 -0.02 4.28 16 21 C -0.07 -3.96 5.48 84.86 0.47 -3.49 16 22 N -0.95 -57.86 10.36 21.65 0.22 -57.64 16 23 Si 0.98 46.19 29.56 68.60 2.03 48.21 16 24 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 25 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 26 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 27 C 0.14 5.29 5.80 86.85 0.50 5.80 16 28 C -0.13 -1.88 5.20 30.67 0.16 -1.72 16 29 C 0.09 0.94 5.50 86.36 0.47 1.41 16 30 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 31 H 0.05 1.00 8.14 -2.39 -0.02 0.99 16 32 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.08 1.59 8.14 -2.39 -0.02 1.58 16 35 H 0.27 -0.28 7.03 -2.91 -0.02 -0.31 16 36 H 0.08 1.64 6.99 -2.39 -0.02 1.63 16 37 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.05 1.20 8.14 -2.38 -0.02 1.18 16 39 H 0.08 1.63 7.32 -2.39 -0.02 1.62 16 40 H 0.09 1.58 8.13 -2.39 -0.02 1.56 16 41 H 0.08 2.25 8.09 -2.39 -0.02 2.23 16 42 H 0.08 2.25 8.04 -2.38 -0.02 2.23 16 43 H 0.00 -0.08 7.55 -2.39 -0.02 -0.10 16 44 H 0.01 0.33 7.37 -2.39 -0.02 0.31 16 45 H 0.25 14.54 8.31 -92.70 -0.77 13.76 16 46 H 0.03 1.04 8.03 -2.39 -0.02 1.02 16 47 H 0.03 1.26 8.03 -2.38 -0.02 1.24 16 48 H 0.10 1.24 7.32 -2.39 -0.02 1.22 16 49 H 0.05 0.98 8.14 -2.38 -0.02 0.96 16 50 H 0.10 0.69 4.50 -2.39 -0.01 0.68 16 51 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 Total: -1.00 -77.71 398.67 4.85 -72.87 By element: Atomic # 1 Polarization: 4.94 SS G_CDS: 0.92 Total: 5.86 kcal Atomic # 6 Polarization: -6.69 SS G_CDS: 6.23 Total: -0.47 kcal Atomic # 7 Polarization: -107.43 SS G_CDS: -5.11 Total: -112.53 kcal Atomic # 8 Polarization: -14.72 SS G_CDS: 0.78 Total: -13.93 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 2.03 Total: 48.21 kcal Total: -77.71 4.85 -72.87 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039154103.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.391 kcal (2) G-P(sol) polarization free energy of solvation -77.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.867 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds