Wall clock time and date at job start Wed Apr 1 2020 05:37:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50699 * 109.47217 * 2 1 4 4 O 1.33490 * 126.83023 * 270.02498 * 3 2 1 5 5 N 1.20653 * 113.15929 * 179.97438 * 4 3 2 6 6 C 1.30018 * 112.30026 * 359.97438 * 5 4 3 7 7 C 1.37363 * 126.82515 * 89.70887 * 3 2 1 8 8 C 1.47395 * 128.56761 * 0.02562 * 7 3 2 9 9 O 1.21609 * 119.99636 * 36.07934 * 8 7 3 10 10 N 1.34770 * 120.00160 * 216.07253 * 8 7 3 11 11 C 1.46928 * 120.62885 * 5.44003 * 10 8 7 12 12 C 1.53630 * 108.54384 * 126.36793 * 11 10 8 13 13 C 1.53039 * 109.24330 * 54.85451 * 12 11 10 14 14 C 1.52992 * 109.44892 * 178.49958 * 13 12 11 15 15 H 1.09005 * 110.89149 * 60.76229 * 14 13 12 16 16 C 1.55154 * 111.00590 * 296.88255 * 14 13 12 17 17 C 1.54373 * 102.92207 * 206.45552 * 16 14 13 18 18 N 1.47016 * 107.28756 * 22.13504 * 17 16 14 19 19 C 1.36940 * 125.64964 * 181.05504 * 18 17 16 20 20 H 1.07995 * 120.00193 * 180.02562 * 19 18 17 21 21 C 1.38816 * 119.99872 * 0.04552 * 19 18 17 22 22 N 1.31618 * 119.99817 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00117 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.46815 * 90.00307 * 23 21 19 25 25 H 1.48498 * 109.47145 * 210.00258 * 23 21 19 26 26 H 1.48501 * 109.46792 * 329.99870 * 23 21 19 27 27 C 1.47420 * 108.70605 * 1.09393 * 18 17 16 28 28 C 1.53041 * 109.53559 * 298.51362 * 13 12 11 29 29 C 1.46923 * 120.63610 * 185.71687 * 10 8 7 30 30 H 1.08998 * 109.47434 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47469 * 300.00261 * 1 2 3 32 32 H 1.09003 * 109.47404 * 60.00080 * 1 2 3 33 33 H 1.08997 * 109.46827 * 239.99905 * 2 1 3 34 34 H 1.09000 * 109.46549 * 120.00215 * 2 1 3 35 35 H 1.08002 * 127.33263 * 179.97438 * 6 5 4 36 36 H 1.08999 * 109.59157 * 246.20107 * 11 10 8 37 37 H 1.08998 * 109.58910 * 6.62651 * 11 10 8 38 38 H 1.09007 * 109.63125 * 294.86526 * 12 11 10 39 39 H 1.09002 * 109.45909 * 174.74039 * 12 11 10 40 40 H 1.09000 * 109.45450 * 58.53465 * 13 12 11 41 41 H 1.09003 * 110.72138 * 324.78792 * 16 14 13 42 42 H 1.09002 * 110.72323 * 88.05858 * 16 14 13 43 43 H 1.09007 * 109.84547 * 262.73071 * 17 16 14 44 44 H 1.08997 * 110.02915 * 141.64872 * 17 16 14 45 45 H 0.97003 * 120.00261 * 179.97438 * 22 21 19 46 46 H 1.08993 * 110.36906 * 217.02851 * 27 18 17 47 47 H 1.09004 * 110.36825 * 94.70450 * 27 18 17 48 48 H 1.08992 * 109.50001 * 301.41140 * 28 13 12 49 49 H 1.09007 * 109.49432 * 181.31335 * 28 13 12 50 50 H 1.09000 * 109.58040 * 353.37866 * 29 10 8 51 51 H 1.09000 * 109.58613 * 113.65636 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 2.2987 2.1754 -1.0685 5 7 2.6891 3.2808 -0.7833 6 6 2.7538 3.4649 0.5021 7 6 2.3016 2.1989 1.0995 8 6 2.1713 1.8507 2.5258 9 8 2.4291 0.7235 2.9025 10 7 1.7667 2.7815 3.4125 11 6 1.3382 4.1115 2.9585 12 6 -0.0592 4.3962 3.5300 13 6 -0.0249 4.2325 5.0513 14 6 -1.4051 4.5514 5.6292 15 1 -2.1594 3.8723 5.2315 16 6 -1.7919 6.0300 5.3619 17 6 -2.7666 6.3460 6.5166 18 7 -2.4922 5.3853 7.5951 19 6 -3.1573 5.3156 8.7902 20 1 -2.8787 4.5704 9.5205 21 6 -4.1898 6.2025 9.0626 22 7 -4.5299 7.1101 8.1721 23 14 -5.0976 6.1070 10.6924 24 1 -4.4207 6.9768 11.6876 25 1 -6.4980 6.5645 10.5066 26 1 -5.0956 4.7038 11.1786 27 6 -1.3819 4.5100 7.1775 28 6 0.3547 2.7922 5.4026 29 6 1.7514 2.4876 4.8520 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8932 -0.5139 0.8900 35 1 3.0696 4.3580 1.0209 36 1 2.0419 4.8637 3.3151 37 1 1.3000 4.1312 1.8694 38 1 -0.7783 3.6959 3.1049 39 1 -0.3529 5.4157 3.2803 40 1 0.7122 4.9157 5.4733 41 1 -0.9135 6.6735 5.4121 42 1 -2.2900 6.1301 4.3976 43 1 -3.7952 6.2344 6.1736 44 1 -2.6036 7.3623 6.8751 45 1 -5.2517 7.7296 8.3622 46 1 -1.5468 3.4927 7.5324 47 1 -0.4337 4.8947 7.5530 48 1 -0.3683 2.1071 4.9600 49 1 0.3562 2.6703 6.4859 50 1 1.9860 1.4353 5.0125 51 1 2.4899 3.1082 5.3595 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039160999.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:37:48 Heat of formation + Delta-G solvation = 41.472727 kcal Electronic energy + Delta-G solvation = -31257.781725 eV Core-core repulsion = 27160.733337 eV Total energy + Delta-G solvation = -4097.048388 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -45.28755 -40.40548 -38.47820 -36.70771 -35.11023 -34.33544 -33.56603 -31.84486 -31.35920 -30.57152 -29.18737 -27.88689 -25.83660 -24.93819 -24.42972 -23.49169 -23.41702 -21.96200 -20.87041 -19.88548 -19.53268 -19.28018 -18.13080 -17.98206 -16.96203 -16.79402 -16.35136 -15.51974 -15.05805 -14.90585 -14.74983 -14.46452 -14.28114 -14.09494 -14.01484 -13.80310 -13.61971 -13.25032 -12.99434 -12.81302 -12.48842 -12.24755 -12.19467 -12.03859 -11.95893 -11.75587 -11.43958 -11.35834 -11.12067 -11.05828 -10.86741 -10.76333 -10.66375 -10.57972 -10.28616 -10.09767 -9.86612 -9.81553 -9.77936 -9.70889 -9.58854 -8.85091 -8.58420 -6.80274 -5.69646 -3.02664 0.77598 1.43494 2.38133 2.55316 2.86174 3.40259 3.45190 3.47144 3.80815 3.93247 4.23093 4.44321 4.50122 4.58705 4.67678 4.73127 4.76488 4.80961 4.89424 4.98362 5.11821 5.21190 5.25846 5.35661 5.39257 5.43142 5.48639 5.55129 5.57519 5.58735 5.63122 5.66516 5.76619 5.79264 5.88122 5.96489 5.98216 6.11278 6.15859 6.31948 6.37151 6.44324 6.56898 6.60990 6.77162 7.00428 7.08078 7.58323 7.65725 7.77684 7.83867 7.84811 8.28687 9.24440 9.85207 10.51747 11.42092 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.021809 B = 0.002126 C = 0.002089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.585117 B =13168.584973 C =13399.978851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.053 4.053 3 C 0.046 3.954 4 O 0.093 5.907 5 N -0.353 5.353 6 C 0.022 3.978 7 C -0.257 4.257 8 C 0.600 3.400 9 O -0.535 6.535 10 N -0.598 5.598 11 C 0.099 3.901 12 C -0.127 4.127 13 C -0.074 4.074 14 C -0.096 4.096 15 H 0.071 0.929 16 C -0.138 4.138 17 C 0.177 3.823 18 N -0.607 5.607 19 C -0.227 4.227 20 H 0.077 0.923 21 C -0.010 4.010 22 N -0.923 5.923 23 Si 0.911 3.089 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.281 1.281 27 C 0.143 3.857 28 C -0.129 4.129 29 C 0.113 3.887 30 H 0.074 0.926 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.094 0.906 34 H 0.113 0.887 35 H 0.202 0.798 36 H 0.073 0.927 37 H 0.085 0.915 38 H 0.066 0.934 39 H 0.080 0.920 40 H 0.072 0.928 41 H 0.055 0.945 42 H 0.056 0.944 43 H 0.043 0.957 44 H 0.040 0.960 45 H 0.251 0.749 46 H 0.035 0.965 47 H 0.016 0.984 48 H 0.066 0.934 49 H 0.082 0.918 50 H 0.093 0.907 51 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.590 -10.372 -17.929 25.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.091 4.091 3 C -0.018 4.018 4 O 0.033 5.967 5 N -0.058 5.058 6 C -0.161 4.161 7 C -0.265 4.265 8 C 0.388 3.612 9 O -0.413 6.413 10 N -0.331 5.331 11 C -0.024 4.024 12 C -0.166 4.166 13 C -0.093 4.093 14 C -0.116 4.116 15 H 0.089 0.911 16 C -0.176 4.176 17 C 0.052 3.948 18 N -0.333 5.333 19 C -0.355 4.355 20 H 0.095 0.905 21 C -0.206 4.206 22 N -0.571 5.571 23 Si 0.741 3.259 24 H -0.216 1.216 25 H -0.217 1.217 26 H -0.207 1.207 27 C 0.016 3.984 28 C -0.167 4.167 29 C -0.009 4.009 30 H 0.093 0.907 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.112 0.888 34 H 0.131 0.869 35 H 0.219 0.781 36 H 0.091 0.909 37 H 0.103 0.897 38 H 0.085 0.915 39 H 0.099 0.901 40 H 0.091 0.909 41 H 0.073 0.927 42 H 0.075 0.925 43 H 0.061 0.939 44 H 0.058 0.942 45 H 0.062 0.938 46 H 0.053 0.947 47 H 0.034 0.966 48 H 0.085 0.915 49 H 0.100 0.900 50 H 0.111 0.889 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 14.796 -10.104 -18.682 25.885 hybrid contribution -0.613 0.150 1.675 1.790 sum 14.183 -9.953 -17.007 24.279 Atomic orbital electron populations 1.21768 0.92776 1.03302 1.02804 1.20417 0.97129 0.85630 1.05929 1.24851 0.95881 0.96031 0.85076 1.84574 1.61294 1.17532 1.33308 1.73681 1.16122 0.98556 1.17426 1.26442 1.01274 0.98973 0.89381 1.22037 1.13863 0.95195 0.95381 1.16832 0.76900 0.84349 0.83165 1.90786 1.51141 1.20146 1.79273 1.47939 1.64188 1.13753 1.07196 1.22165 0.96842 0.83364 1.00027 1.22045 0.95450 1.02711 0.96345 1.21103 0.97887 0.96073 0.94211 1.22347 0.94775 0.97299 0.97130 0.91069 1.22906 0.99921 0.95100 0.99699 1.21132 0.95298 0.93254 0.85100 1.44492 1.36995 1.35785 1.16075 1.19064 1.11053 1.13572 0.91810 0.90537 1.24803 0.99203 0.98249 0.98357 1.69973 1.31829 1.21409 1.33864 0.86131 0.79078 0.77509 0.83133 1.21640 1.21706 1.20715 1.21552 0.91467 0.94153 0.91195 1.21987 0.95674 0.97233 1.01784 1.21729 0.97983 1.02803 0.78363 0.90706 0.92048 0.91964 0.88793 0.86860 0.78132 0.90858 0.89691 0.91529 0.90129 0.90940 0.92666 0.92548 0.93874 0.94194 0.93834 0.94666 0.96617 0.91493 0.89959 0.88901 0.91138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.89 37.16 0.37 -0.58 16 2 C -0.05 -0.36 6.35 -27.88 -0.18 -0.54 16 3 C 0.05 0.41 6.80 -34.63 -0.24 0.18 16 4 O 0.09 0.90 11.06 18.66 0.21 1.11 16 5 N -0.35 -3.60 12.01 31.81 0.38 -3.22 16 6 C 0.02 0.19 10.05 -14.72 -0.15 0.04 16 7 C -0.26 -2.56 5.56 -102.89 -0.57 -3.13 16 8 C 0.60 6.87 7.57 -12.54 -0.09 6.77 16 9 O -0.54 -7.51 15.27 5.27 0.08 -7.43 16 10 N -0.60 -6.06 2.97 -173.78 -0.52 -6.57 16 11 C 0.10 0.83 5.62 -3.48 -0.02 0.81 16 12 C -0.13 -1.28 5.21 -26.38 -0.14 -1.42 16 13 C -0.07 -0.88 1.65 -90.58 -0.15 -1.03 16 14 C -0.10 -1.54 2.56 -88.48 -0.23 -1.77 16 15 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 16 C -0.14 -2.43 5.42 -24.87 -0.13 -2.56 16 17 C 0.18 4.26 5.38 -3.04 -0.02 4.24 16 18 N -0.61 -15.46 3.39 -170.05 -0.58 -16.04 16 19 C -0.23 -6.35 10.28 -15.06 -0.15 -6.50 16 20 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 21 C -0.01 -0.29 5.49 -17.43 -0.10 -0.38 16 22 N -0.92 -27.28 10.31 55.49 0.57 -26.71 16 23 Si 0.91 22.19 29.55 -169.99 -5.02 17.17 16 24 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 25 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 26 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 27 C 0.14 2.83 5.80 -2.53 -0.01 2.82 16 28 C -0.13 -1.43 5.21 -26.61 -0.14 -1.57 16 29 C 0.11 1.15 6.44 -3.71 -0.02 1.13 16 30 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.11 0.91 6.94 -51.93 -0.36 0.55 16 35 H 0.20 1.19 7.35 -52.49 -0.39 0.81 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.08 0.65 4.57 -51.93 -0.24 0.41 16 38 H 0.07 0.72 8.14 -51.92 -0.42 0.30 16 39 H 0.08 0.79 7.32 -51.93 -0.38 0.41 16 40 H 0.07 0.87 8.13 -51.93 -0.42 0.45 16 41 H 0.05 0.91 8.04 -51.93 -0.42 0.49 16 42 H 0.06 0.90 8.09 -51.93 -0.42 0.48 16 43 H 0.04 1.16 7.38 -51.92 -0.38 0.78 16 44 H 0.04 1.07 7.50 -51.93 -0.39 0.68 16 45 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 46 H 0.04 0.69 8.02 -51.93 -0.42 0.27 16 47 H 0.02 0.32 8.03 -51.93 -0.42 -0.10 16 48 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 49 H 0.08 0.94 7.32 -51.93 -0.38 0.56 16 50 H 0.09 1.02 7.00 -51.93 -0.36 0.66 16 51 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 396.28 15.07 5.97 5.97 Total: -1.00 -32.91 396.28 -9.20 -42.11 By element: Atomic # 1 Polarization: 5.43 SS G_CDS: -8.32 Total: -2.90 kcal Atomic # 6 Polarization: -1.51 SS G_CDS: -1.97 Total: -3.49 kcal Atomic # 7 Polarization: -52.40 SS G_CDS: -0.14 Total: -52.54 kcal Atomic # 8 Polarization: -6.61 SS G_CDS: 0.29 Total: -6.32 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -32.91 -9.20 -42.11 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039160999.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.579 kcal (2) G-P(sol) polarization free energy of solvation -32.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.107 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds