Wall clock time and date at job start Wed Apr 1 2020 05:37:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50699 * 109.47217 * 2 1 4 4 O 1.33490 * 126.83023 * 270.02498 * 3 2 1 5 5 N 1.20653 * 113.15929 * 179.97438 * 4 3 2 6 6 C 1.30018 * 112.30026 * 359.97438 * 5 4 3 7 7 C 1.37363 * 126.82515 * 89.70887 * 3 2 1 8 8 C 1.47395 * 128.56761 * 0.02562 * 7 3 2 9 9 O 1.21609 * 119.99636 * 36.07934 * 8 7 3 10 10 N 1.34770 * 120.00160 * 216.07253 * 8 7 3 11 11 C 1.46928 * 120.62885 * 5.44003 * 10 8 7 12 12 C 1.53630 * 108.54384 * 126.36793 * 11 10 8 13 13 C 1.53039 * 109.24330 * 54.85451 * 12 11 10 14 14 C 1.52992 * 109.44892 * 178.49958 * 13 12 11 15 15 H 1.09005 * 110.89149 * 60.76229 * 14 13 12 16 16 C 1.55154 * 111.00590 * 296.88255 * 14 13 12 17 17 C 1.54373 * 102.92207 * 206.45552 * 16 14 13 18 18 N 1.47016 * 107.28756 * 22.13504 * 17 16 14 19 19 C 1.36940 * 125.64964 * 181.05504 * 18 17 16 20 20 H 1.07995 * 120.00193 * 180.02562 * 19 18 17 21 21 C 1.38816 * 119.99872 * 0.04552 * 19 18 17 22 22 N 1.31618 * 119.99817 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00117 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.46815 * 90.00307 * 23 21 19 25 25 H 1.48498 * 109.47145 * 210.00258 * 23 21 19 26 26 H 1.48501 * 109.46792 * 329.99870 * 23 21 19 27 27 C 1.47420 * 108.70605 * 1.09393 * 18 17 16 28 28 C 1.53041 * 109.53559 * 298.51362 * 13 12 11 29 29 C 1.46923 * 120.63610 * 185.71687 * 10 8 7 30 30 H 1.08998 * 109.47434 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47469 * 300.00261 * 1 2 3 32 32 H 1.09003 * 109.47404 * 60.00080 * 1 2 3 33 33 H 1.08997 * 109.46827 * 239.99905 * 2 1 3 34 34 H 1.09000 * 109.46549 * 120.00215 * 2 1 3 35 35 H 1.08002 * 127.33263 * 179.97438 * 6 5 4 36 36 H 1.08999 * 109.59157 * 246.20107 * 11 10 8 37 37 H 1.08998 * 109.58910 * 6.62651 * 11 10 8 38 38 H 1.09007 * 109.63125 * 294.86526 * 12 11 10 39 39 H 1.09002 * 109.45909 * 174.74039 * 12 11 10 40 40 H 1.09000 * 109.45450 * 58.53465 * 13 12 11 41 41 H 1.09003 * 110.72138 * 324.78792 * 16 14 13 42 42 H 1.09002 * 110.72323 * 88.05858 * 16 14 13 43 43 H 1.09007 * 109.84547 * 262.73071 * 17 16 14 44 44 H 1.08997 * 110.02915 * 141.64872 * 17 16 14 45 45 H 0.97003 * 120.00261 * 179.97438 * 22 21 19 46 46 H 1.08993 * 110.36906 * 217.02851 * 27 18 17 47 47 H 1.09004 * 110.36825 * 94.70450 * 27 18 17 48 48 H 1.08992 * 109.50001 * 301.41140 * 28 13 12 49 49 H 1.09007 * 109.49432 * 181.31335 * 28 13 12 50 50 H 1.09000 * 109.58040 * 353.37866 * 29 10 8 51 51 H 1.09000 * 109.58613 * 113.65636 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 2.2987 2.1754 -1.0685 5 7 2.6891 3.2808 -0.7833 6 6 2.7538 3.4649 0.5021 7 6 2.3016 2.1989 1.0995 8 6 2.1713 1.8507 2.5258 9 8 2.4291 0.7235 2.9025 10 7 1.7667 2.7815 3.4125 11 6 1.3382 4.1115 2.9585 12 6 -0.0592 4.3962 3.5300 13 6 -0.0249 4.2325 5.0513 14 6 -1.4051 4.5514 5.6292 15 1 -2.1594 3.8723 5.2315 16 6 -1.7919 6.0300 5.3619 17 6 -2.7666 6.3460 6.5166 18 7 -2.4922 5.3853 7.5951 19 6 -3.1573 5.3156 8.7902 20 1 -2.8787 4.5704 9.5205 21 6 -4.1898 6.2025 9.0626 22 7 -4.5299 7.1101 8.1721 23 14 -5.0976 6.1070 10.6924 24 1 -4.4207 6.9768 11.6876 25 1 -6.4980 6.5645 10.5066 26 1 -5.0956 4.7038 11.1786 27 6 -1.3819 4.5100 7.1775 28 6 0.3547 2.7922 5.4026 29 6 1.7514 2.4876 4.8520 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8932 -0.5139 0.8900 35 1 3.0696 4.3580 1.0209 36 1 2.0419 4.8637 3.3151 37 1 1.3000 4.1312 1.8694 38 1 -0.7783 3.6959 3.1049 39 1 -0.3529 5.4157 3.2803 40 1 0.7122 4.9157 5.4733 41 1 -0.9135 6.6735 5.4121 42 1 -2.2900 6.1301 4.3976 43 1 -3.7952 6.2344 6.1736 44 1 -2.6036 7.3623 6.8751 45 1 -5.2517 7.7296 8.3622 46 1 -1.5468 3.4927 7.5324 47 1 -0.4337 4.8947 7.5530 48 1 -0.3683 2.1071 4.9600 49 1 0.3562 2.6703 6.4859 50 1 1.9860 1.4353 5.0125 51 1 2.4899 3.1082 5.3595 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039160999.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:37:47 Heat of formation + Delta-G solvation = 22.891545 kcal Electronic energy + Delta-G solvation = -31258.587466 eV Core-core repulsion = 27160.733337 eV Total energy + Delta-G solvation = -4097.854128 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -45.97739 -41.27561 -39.73272 -37.97440 -35.72978 -35.38897 -34.70380 -33.41873 -32.22275 -31.25068 -30.89309 -29.31936 -27.10425 -26.24734 -25.11286 -24.66701 -24.25402 -22.73337 -21.93285 -21.61489 -20.81964 -20.06571 -18.89653 -18.80679 -18.70736 -17.62080 -17.19422 -16.78849 -16.44438 -16.05451 -15.75020 -15.65594 -15.36811 -15.13955 -14.88144 -14.60566 -14.47693 -14.28344 -14.09505 -13.82848 -13.80126 -13.59116 -13.41553 -13.21823 -12.91905 -12.82042 -12.71644 -12.51671 -12.31984 -12.25780 -12.15665 -11.99656 -11.92714 -11.80578 -11.63246 -11.45524 -11.32861 -11.26341 -11.03817 -10.88956 -10.69812 -10.50493 -9.67991 -8.87095 -7.84572 -5.19437 0.06361 0.75634 1.44530 1.46529 1.55134 1.65298 1.78363 2.11371 2.49619 3.16105 3.28772 3.33227 3.52349 3.63344 3.72613 3.78515 3.87325 3.93599 4.08748 4.14920 4.21204 4.24230 4.30202 4.33662 4.43809 4.45667 4.48128 4.61500 4.70836 4.74761 4.79953 4.80905 4.86553 4.91664 4.95037 4.99870 5.03626 5.04657 5.05821 5.13278 5.20253 5.26372 5.30498 5.42789 5.46581 5.55417 5.61765 5.72986 5.81463 6.22105 6.28487 6.99031 7.11599 7.12039 7.80908 8.45115 9.25815 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.021809 B = 0.002126 C = 0.002089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.585117 B =13168.584973 C =13399.978851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.052 4.052 3 C 0.051 3.949 4 O 0.086 5.914 5 N -0.374 5.374 6 C 0.035 3.965 7 C -0.277 4.277 8 C 0.599 3.401 9 O -0.569 6.569 10 N -0.596 5.596 11 C 0.101 3.899 12 C -0.124 4.124 13 C -0.063 4.063 14 C -0.078 4.078 15 H 0.061 0.939 16 C -0.121 4.121 17 C 0.182 3.818 18 N -0.632 5.632 19 C -0.241 4.241 20 H 0.081 0.919 21 C -0.070 4.070 22 N -0.953 5.953 23 Si 0.977 3.023 24 H -0.285 1.285 25 H -0.295 1.295 26 H -0.269 1.269 27 C 0.137 3.863 28 C -0.123 4.123 29 C 0.117 3.883 30 H 0.088 0.912 31 H 0.042 0.958 32 H 0.068 0.932 33 H 0.118 0.882 34 H 0.101 0.899 35 H 0.230 0.770 36 H 0.098 0.902 37 H 0.096 0.904 38 H 0.057 0.943 39 H 0.091 0.909 40 H 0.083 0.917 41 H 0.075 0.925 42 H 0.077 0.923 43 H 0.003 0.997 44 H 0.002 0.998 45 H 0.246 0.754 46 H 0.035 0.965 47 H 0.026 0.974 48 H 0.055 0.945 49 H 0.078 0.922 50 H 0.082 0.918 51 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.163 -10.663 -18.893 27.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.090 4.090 3 C -0.013 4.013 4 O 0.029 5.971 5 N -0.081 5.081 6 C -0.147 4.147 7 C -0.284 4.284 8 C 0.388 3.612 9 O -0.450 6.450 10 N -0.328 5.328 11 C -0.021 4.021 12 C -0.162 4.162 13 C -0.082 4.082 14 C -0.098 4.098 15 H 0.080 0.920 16 C -0.159 4.159 17 C 0.057 3.943 18 N -0.358 5.358 19 C -0.370 4.370 20 H 0.099 0.901 21 C -0.263 4.263 22 N -0.602 5.602 23 Si 0.806 3.194 24 H -0.212 1.212 25 H -0.221 1.221 26 H -0.194 1.194 27 C 0.012 3.988 28 C -0.161 4.161 29 C -0.005 4.005 30 H 0.107 0.893 31 H 0.061 0.939 32 H 0.087 0.913 33 H 0.136 0.864 34 H 0.119 0.881 35 H 0.246 0.754 36 H 0.116 0.884 37 H 0.114 0.886 38 H 0.076 0.924 39 H 0.109 0.891 40 H 0.101 0.899 41 H 0.094 0.906 42 H 0.096 0.904 43 H 0.021 0.979 44 H 0.020 0.980 45 H 0.055 0.945 46 H 0.053 0.947 47 H 0.044 0.956 48 H 0.074 0.926 49 H 0.097 0.903 50 H 0.100 0.900 51 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 16.390 -10.417 -19.663 27.636 hybrid contribution -1.102 0.205 1.999 2.292 sum 15.288 -10.212 -17.663 25.495 Atomic orbital electron populations 1.21748 0.92290 1.04085 1.02149 1.20502 0.97406 0.84650 1.06481 1.25236 0.94697 0.96534 0.84860 1.84565 1.61540 1.17591 1.33411 1.73676 1.17262 0.98939 1.18197 1.26854 0.99796 0.99215 0.88852 1.22009 1.15382 0.96252 0.94804 1.17011 0.76438 0.83988 0.83770 1.90768 1.52785 1.21530 1.79892 1.48010 1.63561 1.14227 1.06974 1.22292 0.96219 0.82857 1.00711 1.22001 0.96480 1.03141 0.94547 1.21009 0.95087 0.96579 0.95531 1.22213 0.97261 0.96012 0.94291 0.92002 1.22760 0.99044 0.96331 0.97740 1.20932 0.95104 0.91377 0.86928 1.44856 1.38147 1.37037 1.15762 1.19475 1.11201 1.13312 0.93029 0.90144 1.25665 1.00433 0.98306 1.01858 1.70205 1.32206 1.22167 1.35638 0.85091 0.77278 0.77961 0.79106 1.21226 1.22120 1.19367 1.21775 0.89952 0.93071 0.93971 1.21903 0.96145 0.96521 1.01554 1.21673 0.97534 1.02627 0.78636 0.89273 0.93884 0.91321 0.86368 0.88112 0.75412 0.88367 0.88615 0.92410 0.89092 0.89860 0.90624 0.90442 0.97855 0.97992 0.94522 0.94673 0.95592 0.92602 0.90317 0.89996 0.89332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 9.89 71.98 0.71 -0.96 16 2 C -0.05 -0.66 6.35 29.85 0.19 -0.47 16 3 C 0.05 0.85 6.80 25.48 0.17 1.03 16 4 O 0.09 1.54 11.06 77.02 0.85 2.39 16 5 N -0.37 -6.89 12.01 -54.19 -0.65 -7.55 16 6 C 0.04 0.52 10.05 87.29 0.88 1.40 16 7 C -0.28 -5.03 5.56 -18.74 -0.10 -5.13 16 8 C 0.60 12.85 7.57 86.66 0.66 13.51 16 9 O -0.57 -15.70 15.27 -4.06 -0.06 -15.76 16 10 N -0.60 -10.64 2.97 -821.98 -2.44 -13.08 16 11 C 0.10 1.33 5.62 86.51 0.49 1.82 16 12 C -0.12 -2.08 5.21 30.82 0.16 -1.92 16 13 C -0.06 -1.33 1.65 -10.77 -0.02 -1.34 16 14 C -0.08 -2.39 2.56 -9.40 -0.02 -2.41 16 15 H 0.06 2.02 8.14 -2.38 -0.02 2.00 16 16 C -0.12 -4.07 5.42 31.80 0.17 -3.90 16 17 C 0.18 8.98 5.38 86.75 0.47 9.44 16 18 N -0.63 -32.65 3.39 -691.91 -2.35 -35.00 16 19 C -0.24 -13.71 10.28 84.03 0.86 -12.85 16 20 H 0.08 4.37 7.83 -2.91 -0.02 4.35 16 21 C -0.07 -4.05 5.49 84.86 0.47 -3.59 16 22 N -0.95 -58.32 10.31 21.65 0.22 -58.10 16 23 Si 0.98 46.34 29.55 68.60 2.03 48.36 16 24 H -0.29 -13.25 7.11 99.48 0.71 -12.55 16 25 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 26 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 27 C 0.14 5.35 5.80 86.86 0.50 5.85 16 28 C -0.12 -2.52 5.21 30.67 0.16 -2.36 16 29 C 0.12 2.14 6.44 86.36 0.56 2.69 16 30 H 0.09 0.76 8.14 -2.39 -0.02 0.75 16 31 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.12 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.10 1.58 6.94 -2.39 -0.02 1.57 16 35 H 0.23 1.83 7.35 -2.91 -0.02 1.81 16 36 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.10 1.11 4.57 -2.39 -0.01 1.10 16 38 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 39 H 0.09 1.40 7.32 -2.39 -0.02 1.39 16 40 H 0.08 1.66 8.13 -2.39 -0.02 1.64 16 41 H 0.08 2.27 8.04 -2.39 -0.02 2.25 16 42 H 0.08 2.31 8.09 -2.39 -0.02 2.29 16 43 H 0.00 0.18 7.38 -2.38 -0.02 0.16 16 44 H 0.00 0.10 7.50 -2.39 -0.02 0.08 16 45 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 46 H 0.03 1.36 8.02 -2.39 -0.02 1.34 16 47 H 0.03 0.98 8.03 -2.38 -0.02 0.96 16 48 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 49 H 0.08 1.67 7.32 -2.38 -0.02 1.66 16 50 H 0.08 1.72 7.00 -2.39 -0.02 1.71 16 51 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 Total: -1.00 -74.35 396.28 4.82 -69.53 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: 0.92 Total: 8.39 kcal Atomic # 6 Polarization: -5.48 SS G_CDS: 6.30 Total: 0.82 kcal Atomic # 7 Polarization: -108.51 SS G_CDS: -5.21 Total: -113.73 kcal Atomic # 8 Polarization: -14.16 SS G_CDS: 0.79 Total: -13.37 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 2.03 Total: 48.36 kcal Total: -74.35 4.82 -69.53 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039160999.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.421 kcal (2) G-P(sol) polarization free energy of solvation -74.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.529 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds