Wall clock time and date at job start Wed Apr 1 2020 05:37:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50700 * 109.46992 * 2 1 4 4 C 1.35321 * 126.66700 * 90.00416 * 3 2 1 5 5 C 1.42268 * 103.92007 * 180.02562 * 4 3 2 6 6 C 1.48337 * 126.93626 * 179.97438 * 5 4 3 7 7 O 1.21494 * 119.99687 * 353.04750 * 6 5 4 8 8 N 1.34774 * 119.99647 * 173.04798 * 6 5 4 9 9 C 1.46930 * 120.62675 * 173.18820 * 8 6 5 10 10 C 1.53191 * 108.77453 * 126.40833 * 9 8 6 11 11 C 1.53045 * 109.31014 * 54.63773 * 10 9 8 12 12 C 1.52999 * 109.46029 * 178.61176 * 11 10 9 13 13 H 1.09005 * 110.64160 * 59.29655 * 12 11 10 14 14 C 1.55155 * 110.72358 * 182.44028 * 12 11 10 15 15 C 1.55123 * 101.48704 * 153.73401 * 14 12 11 16 16 N 1.47421 * 104.94138 * 323.22415 * 15 14 12 17 17 C 1.36936 * 125.64546 * 204.03949 * 16 15 14 18 18 H 1.08005 * 119.99983 * 179.97438 * 17 16 15 19 19 C 1.38816 * 120.00117 * 359.95965 * 17 16 15 20 20 N 1.31623 * 120.00027 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00100 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.46821 * 59.99950 * 21 19 17 23 23 H 1.48496 * 109.46971 * 179.97438 * 21 19 17 24 24 H 1.48496 * 109.47381 * 300.00035 * 21 19 17 25 25 C 1.47014 * 108.70639 * 24.00116 * 16 15 14 26 26 C 1.53035 * 109.53783 * 298.63284 * 11 10 9 27 27 C 1.46925 * 120.63631 * 353.20950 * 8 6 5 28 28 N 1.30982 * 106.12546 * 0.25963 * 5 4 3 29 29 O 1.20906 * 111.44087 * 359.53816 * 28 5 4 30 30 H 1.08993 * 109.47157 * 59.99862 * 1 2 3 31 31 H 1.08997 * 109.47186 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.46918 * 299.99986 * 1 2 3 33 33 H 1.08998 * 109.47071 * 239.99680 * 2 1 3 34 34 H 1.09001 * 109.47008 * 119.99919 * 2 1 3 35 35 H 1.08001 * 128.03548 * 0.03449 * 4 3 2 36 36 H 1.08997 * 109.58459 * 6.62493 * 9 8 6 37 37 H 1.09001 * 109.58729 * 246.20153 * 9 8 6 38 38 H 1.09000 * 109.50274 * 294.68706 * 10 9 8 39 39 H 1.09005 * 109.49750 * 174.58344 * 10 9 8 40 40 H 1.08995 * 109.46175 * 58.65488 * 11 10 9 41 41 H 1.09004 * 111.00553 * 271.94184 * 14 12 11 42 42 H 1.09003 * 111.00129 * 35.78574 * 14 12 11 43 43 H 1.09001 * 110.41618 * 204.29616 * 15 14 12 44 44 H 1.08997 * 110.20832 * 82.04386 * 15 14 12 45 45 H 0.96998 * 119.99905 * 180.02562 * 20 19 17 46 46 H 1.08999 * 109.88711 * 239.52415 * 25 16 15 47 47 H 1.09003 * 110.00892 * 118.42969 * 25 16 15 48 48 H 1.09000 * 109.49909 * 181.32009 * 26 11 10 49 49 H 1.09009 * 109.49772 * 301.41505 * 26 11 10 50 50 H 1.08988 * 109.58753 * 113.79921 * 27 8 6 51 51 H 1.09002 * 109.70143 * 353.44408 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3017 2.1827 1.0854 5 6 2.7384 3.4199 0.5353 6 6 3.1646 4.6274 1.2841 7 8 3.0434 4.6671 2.4923 8 7 3.6861 5.6804 0.6241 9 6 3.9744 6.9372 1.3284 10 6 5.4346 7.3226 1.0715 11 6 5.6861 7.3757 -0.4372 12 6 7.1344 7.7941 -0.6981 13 1 7.8269 7.0883 -0.2392 14 6 7.4047 7.9167 -2.2210 15 6 8.5650 8.9459 -2.2470 16 7 8.2545 9.8962 -1.1636 17 6 8.6965 11.1900 -1.0858 18 1 8.4115 11.8085 -0.2476 19 6 9.5111 11.7063 -2.0842 20 7 9.8583 10.9526 -3.1059 21 14 10.1135 13.4714 -1.9785 22 1 10.9100 13.6491 -0.7378 23 1 10.9616 13.7764 -3.1586 24 1 8.9482 14.3916 -1.9546 25 6 7.3910 9.2253 -0.1810 26 6 5.4368 5.9941 -1.0465 27 6 3.9767 5.5936 -0.8135 28 7 2.6824 3.2795 -0.7657 29 8 2.2985 2.1755 -1.0750 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 2.2073 1.9138 2.1272 36 1 3.8151 6.8014 2.3981 37 1 3.3178 7.7237 0.9561 38 1 6.0919 6.5802 1.5240 39 1 5.6349 8.3011 1.5083 40 1 5.0114 8.1005 -0.8926 41 1 7.7173 6.9605 -2.6406 42 1 6.5294 8.3032 -2.7432 43 1 8.5946 9.4614 -3.2069 44 1 9.5148 8.4474 -2.0536 45 1 10.4278 11.3133 -3.8033 46 1 6.4463 9.7615 -0.0902 47 1 7.8891 9.1857 0.7878 48 1 5.6388 6.0269 -2.1171 49 1 6.0942 5.2641 -0.5739 50 1 3.3204 6.2704 -1.3605 51 1 3.8183 4.5721 -1.1594 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039174132.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:37:51 Heat of formation + Delta-G solvation = 50.794715 kcal Electronic energy + Delta-G solvation = -30737.427269 eV Core-core repulsion = 26640.783113 eV Total energy + Delta-G solvation = -4096.644156 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -45.45471 -40.36900 -38.45487 -36.65402 -35.40721 -34.45777 -33.60586 -31.78686 -31.30355 -30.53066 -29.16695 -27.85218 -25.78604 -24.87391 -24.63907 -23.54339 -23.10141 -22.49746 -20.78824 -19.97504 -19.43337 -19.15169 -18.19022 -17.68450 -17.19147 -16.80503 -16.16153 -15.43593 -15.16357 -14.99035 -14.85255 -14.45123 -14.16398 -14.13749 -13.92201 -13.79585 -13.52991 -13.23907 -13.16065 -13.06245 -12.42648 -12.36926 -12.31143 -11.88570 -11.70304 -11.58379 -11.53747 -11.29017 -11.10879 -10.97455 -10.88795 -10.78771 -10.73082 -10.50197 -10.36245 -10.10195 -9.89208 -9.85351 -9.69787 -9.67281 -9.40646 -8.82087 -8.60435 -6.77818 -5.61162 -3.02482 0.75003 1.29524 2.43439 2.65533 2.86891 3.42345 3.46287 3.47776 3.57143 3.96309 4.41429 4.51202 4.52134 4.58680 4.62645 4.79133 4.84459 4.86563 4.89649 5.04178 5.10040 5.22955 5.24799 5.38217 5.41975 5.45821 5.48748 5.51755 5.61592 5.62678 5.65963 5.73262 5.79169 5.88044 5.96010 6.02485 6.03885 6.16723 6.20389 6.41845 6.44254 6.48960 6.66029 6.70019 6.84252 7.04795 7.07763 7.57416 7.59521 7.66957 7.83645 7.90682 8.41435 9.26778 9.88102 10.54001 11.42523 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.029785 B = 0.001914 C = 0.001830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.831399 B =14622.680805 C =15297.746388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.043 4.043 3 C -0.027 4.027 4 C -0.183 4.183 5 C -0.018 4.018 6 C 0.596 3.404 7 O -0.529 6.529 8 N -0.592 5.592 9 C 0.111 3.889 10 C -0.129 4.129 11 C -0.075 4.075 12 C -0.093 4.093 13 H 0.067 0.933 14 C -0.138 4.138 15 C 0.152 3.848 16 N -0.605 5.605 17 C -0.221 4.221 18 H 0.076 0.924 19 C -0.013 4.013 20 N -0.923 5.923 21 Si 0.914 3.086 22 H -0.286 1.286 23 H -0.290 1.290 24 H -0.285 1.285 25 C 0.143 3.857 26 C -0.126 4.126 27 C 0.087 3.913 28 N -0.327 5.327 29 O 0.115 5.885 30 H 0.062 0.938 31 H 0.071 0.929 32 H 0.061 0.939 33 H 0.092 0.908 34 H 0.100 0.900 35 H 0.180 0.820 36 H 0.093 0.907 37 H 0.072 0.928 38 H 0.066 0.934 39 H 0.083 0.917 40 H 0.073 0.927 41 H 0.055 0.945 42 H 0.058 0.942 43 H 0.105 0.895 44 H 0.008 0.992 45 H 0.252 0.748 46 H 0.022 0.978 47 H 0.017 0.983 48 H 0.081 0.919 49 H 0.063 0.937 50 H 0.071 0.929 51 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.865 -23.399 5.158 30.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.081 4.081 3 C -0.091 4.091 4 C -0.205 4.205 5 C -0.176 4.176 6 C 0.381 3.619 7 O -0.404 6.404 8 N -0.324 5.324 9 C -0.010 4.010 10 C -0.167 4.167 11 C -0.094 4.094 12 C -0.112 4.112 13 H 0.085 0.915 14 C -0.177 4.177 15 C 0.027 3.973 16 N -0.331 5.331 17 C -0.350 4.350 18 H 0.094 0.906 19 C -0.208 4.208 20 N -0.572 5.572 21 Si 0.744 3.256 22 H -0.213 1.213 23 H -0.216 1.216 24 H -0.212 1.212 25 C 0.017 3.983 26 C -0.164 4.164 27 C -0.036 4.036 28 N -0.030 5.030 29 O 0.043 5.957 30 H 0.081 0.919 31 H 0.090 0.910 32 H 0.080 0.920 33 H 0.110 0.890 34 H 0.118 0.882 35 H 0.197 0.803 36 H 0.111 0.889 37 H 0.091 0.909 38 H 0.085 0.915 39 H 0.101 0.899 40 H 0.092 0.908 41 H 0.073 0.927 42 H 0.077 0.923 43 H 0.122 0.878 44 H 0.026 0.974 45 H 0.062 0.938 46 H 0.039 0.961 47 H 0.035 0.965 48 H 0.100 0.900 49 H 0.082 0.918 50 H 0.089 0.911 51 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -18.497 -22.340 4.698 29.382 hybrid contribution 0.395 0.682 0.783 1.111 sum -18.102 -21.658 5.481 28.754 Atomic orbital electron populations 1.21815 0.93255 1.02947 1.03019 1.20179 0.96797 0.86033 1.05126 1.24536 1.01933 0.97166 0.85424 1.22416 1.04967 0.91594 1.01528 1.23508 1.06038 0.97950 0.90116 1.16973 0.77948 0.80901 0.86045 1.90783 1.56088 1.80803 1.12738 1.48012 1.60869 1.12805 1.10737 1.21780 0.96993 0.83870 0.98357 1.22004 0.94951 1.02614 0.97149 1.21158 0.97459 0.96171 0.94574 1.22166 0.94247 0.97278 0.97533 0.91477 1.23075 1.00911 0.99570 0.94150 1.21947 0.91310 0.88330 0.95737 1.44502 1.56816 1.09719 1.22037 1.19044 1.24079 0.86464 1.05393 0.90643 1.24787 1.00333 0.98428 0.97267 1.69802 1.40634 1.34739 1.12015 0.86160 0.78363 0.84158 0.76872 1.21273 1.21584 1.21202 1.21301 0.93784 0.90587 0.92660 1.21968 0.94897 0.97478 1.02088 1.22440 0.97034 1.04750 0.79352 1.74107 1.14403 0.99135 1.15400 1.84805 1.59892 1.17299 1.33695 0.91916 0.91045 0.91965 0.88963 0.88199 0.80276 0.88893 0.90940 0.91547 0.89878 0.90839 0.92660 0.92284 0.87769 0.97351 0.93769 0.96050 0.96541 0.90004 0.91817 0.91058 0.86989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.45 9.89 37.16 0.37 -0.08 16 2 C -0.04 -0.14 6.50 -27.88 -0.18 -0.32 16 3 C -0.03 -0.19 6.73 -35.35 -0.24 -0.43 16 4 C -0.18 -1.62 10.93 -39.07 -0.43 -2.04 16 5 C -0.02 -0.20 6.87 -82.53 -0.57 -0.77 16 6 C 0.60 8.10 7.71 -12.11 -0.09 8.00 16 7 O -0.53 -8.38 16.38 5.37 0.09 -8.29 16 8 N -0.59 -7.46 2.97 -173.70 -0.52 -7.97 16 9 C 0.11 1.34 6.44 -3.71 -0.02 1.32 16 10 C -0.13 -1.65 5.20 -26.61 -0.14 -1.78 16 11 C -0.07 -1.03 1.53 -90.58 -0.14 -1.17 16 12 C -0.09 -1.61 2.48 -88.78 -0.22 -1.83 16 13 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 14 C -0.14 -2.61 5.50 -24.47 -0.13 -2.75 16 15 C 0.15 3.75 5.89 -2.42 -0.01 3.74 16 16 N -0.60 -15.84 3.40 -169.94 -0.58 -16.41 16 17 C -0.22 -6.30 10.27 -15.06 -0.15 -6.46 16 18 H 0.08 2.07 7.83 -52.48 -0.41 1.66 16 19 C -0.01 -0.37 5.49 -17.43 -0.10 -0.47 16 20 N -0.92 -27.34 10.09 55.49 0.56 -26.78 16 21 Si 0.91 22.41 29.55 -169.99 -5.02 17.38 16 22 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 23 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 24 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 25 C 0.14 3.00 5.89 -3.07 -0.02 2.99 16 26 C -0.13 -1.54 5.19 -26.61 -0.14 -1.68 16 27 C 0.09 1.00 6.12 -3.71 -0.02 0.98 16 28 N -0.33 -3.58 8.67 33.29 0.29 -3.29 16 29 O 0.12 1.04 11.18 17.24 0.19 1.24 16 30 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.07 0.11 8.14 -51.93 -0.42 -0.31 16 32 H 0.06 0.22 8.14 -51.93 -0.42 -0.21 16 33 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 34 H 0.10 0.18 8.14 -51.93 -0.42 -0.24 16 35 H 0.18 1.31 8.06 -52.49 -0.42 0.88 16 36 H 0.09 1.16 7.00 -51.93 -0.36 0.80 16 37 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.08 1.07 7.27 -51.93 -0.38 0.69 16 40 H 0.07 1.06 8.11 -51.93 -0.42 0.64 16 41 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 42 H 0.06 1.10 8.05 -51.93 -0.42 0.68 16 43 H 0.10 2.89 5.87 -51.93 -0.30 2.59 16 44 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 45 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 46 H 0.02 0.45 7.67 -51.93 -0.40 0.05 16 47 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 48 H 0.08 0.98 7.27 -51.93 -0.38 0.60 16 49 H 0.06 0.81 8.14 -51.92 -0.42 0.38 16 50 H 0.07 0.79 8.14 -51.94 -0.42 0.37 16 51 H 0.11 1.29 4.23 -55.89 -0.24 1.05 16 LS Contribution 397.65 15.07 5.99 5.99 Total: -1.00 -33.13 397.65 -9.59 -42.72 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -8.36 Total: -1.83 kcal Atomic # 6 Polarization: -0.52 SS G_CDS: -2.24 Total: -2.75 kcal Atomic # 7 Polarization: -54.21 SS G_CDS: -0.24 Total: -54.46 kcal Atomic # 8 Polarization: -7.34 SS G_CDS: 0.28 Total: -7.06 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -33.13 -9.59 -42.72 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039174132.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.516 kcal (2) G-P(sol) polarization free energy of solvation -33.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.721 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds