Wall clock time and date at job start Wed Apr 1 2020 05:37:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50700 * 109.46992 * 2 1 4 4 C 1.35321 * 126.66700 * 90.00416 * 3 2 1 5 5 C 1.42268 * 103.92007 * 180.02562 * 4 3 2 6 6 C 1.48337 * 126.93626 * 179.97438 * 5 4 3 7 7 O 1.21494 * 119.99687 * 353.04750 * 6 5 4 8 8 N 1.34774 * 119.99647 * 173.04798 * 6 5 4 9 9 C 1.46930 * 120.62675 * 173.18820 * 8 6 5 10 10 C 1.53191 * 108.77453 * 126.40833 * 9 8 6 11 11 C 1.53045 * 109.31014 * 54.63773 * 10 9 8 12 12 C 1.52999 * 109.46029 * 178.61176 * 11 10 9 13 13 H 1.09005 * 110.64160 * 59.29655 * 12 11 10 14 14 C 1.55155 * 110.72358 * 182.44028 * 12 11 10 15 15 C 1.55123 * 101.48704 * 153.73401 * 14 12 11 16 16 N 1.47421 * 104.94138 * 323.22415 * 15 14 12 17 17 C 1.36936 * 125.64546 * 204.03949 * 16 15 14 18 18 H 1.08005 * 119.99983 * 179.97438 * 17 16 15 19 19 C 1.38816 * 120.00117 * 359.95965 * 17 16 15 20 20 N 1.31623 * 120.00027 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00100 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.46821 * 59.99950 * 21 19 17 23 23 H 1.48496 * 109.46971 * 179.97438 * 21 19 17 24 24 H 1.48496 * 109.47381 * 300.00035 * 21 19 17 25 25 C 1.47014 * 108.70639 * 24.00116 * 16 15 14 26 26 C 1.53035 * 109.53783 * 298.63284 * 11 10 9 27 27 C 1.46925 * 120.63631 * 353.20950 * 8 6 5 28 28 N 1.30982 * 106.12546 * 0.25963 * 5 4 3 29 29 O 1.20906 * 111.44087 * 359.53816 * 28 5 4 30 30 H 1.08993 * 109.47157 * 59.99862 * 1 2 3 31 31 H 1.08997 * 109.47186 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.46918 * 299.99986 * 1 2 3 33 33 H 1.08998 * 109.47071 * 239.99680 * 2 1 3 34 34 H 1.09001 * 109.47008 * 119.99919 * 2 1 3 35 35 H 1.08001 * 128.03548 * 0.03449 * 4 3 2 36 36 H 1.08997 * 109.58459 * 6.62493 * 9 8 6 37 37 H 1.09001 * 109.58729 * 246.20153 * 9 8 6 38 38 H 1.09000 * 109.50274 * 294.68706 * 10 9 8 39 39 H 1.09005 * 109.49750 * 174.58344 * 10 9 8 40 40 H 1.08995 * 109.46175 * 58.65488 * 11 10 9 41 41 H 1.09004 * 111.00553 * 271.94184 * 14 12 11 42 42 H 1.09003 * 111.00129 * 35.78574 * 14 12 11 43 43 H 1.09001 * 110.41618 * 204.29616 * 15 14 12 44 44 H 1.08997 * 110.20832 * 82.04386 * 15 14 12 45 45 H 0.96998 * 119.99905 * 180.02562 * 20 19 17 46 46 H 1.08999 * 109.88711 * 239.52415 * 25 16 15 47 47 H 1.09003 * 110.00892 * 118.42969 * 25 16 15 48 48 H 1.09000 * 109.49909 * 181.32009 * 26 11 10 49 49 H 1.09009 * 109.49772 * 301.41505 * 26 11 10 50 50 H 1.08988 * 109.58753 * 113.79921 * 27 8 6 51 51 H 1.09002 * 109.70143 * 353.44408 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3017 2.1827 1.0854 5 6 2.7384 3.4199 0.5353 6 6 3.1646 4.6274 1.2841 7 8 3.0434 4.6671 2.4923 8 7 3.6861 5.6804 0.6241 9 6 3.9744 6.9372 1.3284 10 6 5.4346 7.3226 1.0715 11 6 5.6861 7.3757 -0.4372 12 6 7.1344 7.7941 -0.6981 13 1 7.8269 7.0883 -0.2392 14 6 7.4047 7.9167 -2.2210 15 6 8.5650 8.9459 -2.2470 16 7 8.2545 9.8962 -1.1636 17 6 8.6965 11.1900 -1.0858 18 1 8.4115 11.8085 -0.2476 19 6 9.5111 11.7063 -2.0842 20 7 9.8583 10.9526 -3.1059 21 14 10.1135 13.4714 -1.9785 22 1 10.9100 13.6491 -0.7378 23 1 10.9616 13.7764 -3.1586 24 1 8.9482 14.3916 -1.9546 25 6 7.3910 9.2253 -0.1810 26 6 5.4368 5.9941 -1.0465 27 6 3.9767 5.5936 -0.8135 28 7 2.6824 3.2795 -0.7657 29 8 2.2985 2.1755 -1.0750 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 2.2073 1.9138 2.1272 36 1 3.8151 6.8014 2.3981 37 1 3.3178 7.7237 0.9561 38 1 6.0919 6.5802 1.5240 39 1 5.6349 8.3011 1.5083 40 1 5.0114 8.1005 -0.8926 41 1 7.7173 6.9605 -2.6406 42 1 6.5294 8.3032 -2.7432 43 1 8.5946 9.4614 -3.2069 44 1 9.5148 8.4474 -2.0536 45 1 10.4278 11.3133 -3.8033 46 1 6.4463 9.7615 -0.0902 47 1 7.8891 9.1857 0.7878 48 1 5.6388 6.0269 -2.1171 49 1 6.0942 5.2641 -0.5739 50 1 3.3204 6.2704 -1.3605 51 1 3.8183 4.5721 -1.1594 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039174132.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:37:50 Heat of formation + Delta-G solvation = 32.629171 kcal Electronic energy + Delta-G solvation = -30738.214986 eV Core-core repulsion = 26640.783113 eV Total energy + Delta-G solvation = -4097.431873 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -46.18570 -41.40665 -39.82077 -38.05607 -35.85058 -35.51253 -34.89045 -33.44972 -32.29548 -31.10744 -30.95023 -29.38572 -27.17559 -26.28819 -25.07851 -24.81267 -24.09985 -23.31020 -21.90599 -21.76424 -20.83154 -20.09049 -18.93353 -18.87231 -18.45098 -18.02466 -17.13721 -16.87616 -16.53506 -16.12814 -15.73408 -15.59434 -15.38251 -15.12767 -14.98927 -14.59419 -14.52664 -14.40270 -14.29272 -14.14724 -13.56596 -13.45132 -13.37109 -13.30488 -12.97205 -12.85672 -12.69156 -12.51169 -12.41653 -12.25062 -12.11224 -12.04978 -11.84849 -11.82451 -11.63702 -11.58984 -11.48925 -11.33099 -11.05324 -11.00029 -10.73145 -10.44128 -9.84377 -8.87351 -7.77139 -5.21508 -0.03391 0.63323 1.44920 1.48378 1.54820 1.60194 1.92597 1.99992 2.49352 2.73668 3.31322 3.33479 3.63721 3.66067 3.70223 3.82770 3.89039 3.96149 4.05852 4.15447 4.18708 4.25008 4.36583 4.37253 4.41424 4.44095 4.49571 4.53062 4.70764 4.72187 4.78508 4.83321 4.87019 4.91045 4.95720 4.97653 5.01450 5.08792 5.09629 5.14615 5.16241 5.22441 5.37122 5.41665 5.43818 5.46233 5.54849 5.68345 5.83702 6.09472 6.32176 6.71816 7.01738 7.11499 7.79960 8.44292 9.24393 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.029785 B = 0.001914 C = 0.001830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.831399 B =14622.680805 C =15297.746388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.042 4.042 3 C -0.008 4.008 4 C -0.196 4.196 5 C -0.042 4.042 6 C 0.592 3.408 7 O -0.560 6.560 8 N -0.593 5.593 9 C 0.114 3.886 10 C -0.122 4.122 11 C -0.065 4.065 12 C -0.077 4.077 13 H 0.069 0.931 14 C -0.121 4.121 15 C 0.151 3.849 16 N -0.628 5.628 17 C -0.241 4.241 18 H 0.079 0.921 19 C -0.069 4.069 20 N -0.949 5.949 21 Si 0.981 3.019 22 H -0.280 1.280 23 H -0.292 1.292 24 H -0.276 1.276 25 C 0.138 3.862 26 C -0.119 4.119 27 C 0.091 3.909 28 N -0.339 5.339 29 O 0.118 5.882 30 H 0.054 0.946 31 H 0.089 0.911 32 H 0.055 0.945 33 H 0.109 0.891 34 H 0.120 0.880 35 H 0.191 0.809 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.061 0.939 39 H 0.082 0.918 40 H 0.074 0.926 41 H 0.081 0.919 42 H 0.065 0.935 43 H 0.071 0.929 44 H -0.020 1.020 45 H 0.247 0.753 46 H 0.028 0.972 47 H 0.014 0.986 48 H 0.090 0.910 49 H 0.061 0.939 50 H 0.080 0.920 51 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.424 -25.072 5.241 32.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.080 4.080 3 C -0.071 4.071 4 C -0.218 4.218 5 C -0.199 4.199 6 C 0.379 3.621 7 O -0.438 6.438 8 N -0.324 5.324 9 C -0.008 4.008 10 C -0.161 4.161 11 C -0.084 4.084 12 C -0.096 4.096 13 H 0.088 0.912 14 C -0.159 4.159 15 C 0.026 3.974 16 N -0.354 5.354 17 C -0.370 4.370 18 H 0.097 0.903 19 C -0.262 4.262 20 N -0.599 5.599 21 Si 0.809 3.191 22 H -0.206 1.206 23 H -0.218 1.218 24 H -0.202 1.202 25 C 0.013 3.987 26 C -0.158 4.158 27 C -0.031 4.031 28 N -0.042 5.042 29 O 0.045 5.955 30 H 0.073 0.927 31 H 0.108 0.892 32 H 0.074 0.926 33 H 0.128 0.872 34 H 0.138 0.862 35 H 0.208 0.792 36 H 0.105 0.895 37 H 0.104 0.896 38 H 0.080 0.920 39 H 0.100 0.900 40 H 0.092 0.908 41 H 0.099 0.901 42 H 0.084 0.916 43 H 0.089 0.911 44 H -0.002 1.002 45 H 0.056 0.944 46 H 0.046 0.954 47 H 0.032 0.968 48 H 0.108 0.892 49 H 0.080 0.920 50 H 0.098 0.902 51 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -20.073 -24.013 4.789 31.662 hybrid contribution 0.860 1.133 0.766 1.616 sum -19.213 -22.880 5.555 30.389 Atomic orbital electron populations 1.21824 0.92899 1.03945 1.02323 1.20443 0.96888 0.83641 1.06979 1.25169 0.99822 0.98015 0.84068 1.22637 1.05565 0.90980 1.02650 1.23448 1.07588 0.98203 0.90687 1.17264 0.77523 0.81489 0.85863 1.90753 1.57498 1.81534 1.14024 1.48114 1.60453 1.12724 1.11153 1.21760 0.96630 0.84150 0.98219 1.21917 0.95406 1.02433 0.96297 1.21048 0.94762 0.97146 0.95413 1.22054 0.96698 0.94956 0.95918 0.91239 1.22906 0.98551 0.98848 0.95619 1.21774 0.92587 0.89154 0.93919 1.44838 1.57393 1.09577 1.23608 1.19438 1.24202 0.87858 1.05510 0.90338 1.25655 1.00872 1.02517 0.97114 1.70065 1.41075 1.36253 1.12506 0.85119 0.77883 0.79426 0.76706 1.20590 1.21814 1.20177 1.21490 0.92976 0.92571 0.91642 1.21905 0.95353 0.96115 1.02382 1.22464 0.96588 1.05305 0.78772 1.74057 1.15029 1.00067 1.15080 1.84773 1.59369 1.16987 1.34368 0.92688 0.89221 0.92630 0.87247 0.86190 0.79209 0.89454 0.89639 0.92046 0.89996 0.90788 0.90051 0.91646 0.91108 1.00168 0.94372 0.95367 0.96823 0.89158 0.92030 0.90184 0.86587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.52 9.89 71.98 0.71 0.19 16 2 C -0.04 -0.14 6.50 29.85 0.19 0.05 16 3 C -0.01 -0.09 6.73 25.01 0.17 0.08 16 4 C -0.20 -3.21 10.93 22.60 0.25 -2.96 16 5 C -0.04 -0.94 6.87 42.96 0.30 -0.65 16 6 C 0.59 15.81 7.71 86.93 0.67 16.48 16 7 O -0.56 -17.80 16.38 -3.70 -0.06 -17.86 16 8 N -0.59 -14.28 2.97 -821.77 -2.44 -16.72 16 9 C 0.11 2.62 6.44 86.36 0.56 3.17 16 10 C -0.12 -2.96 5.20 30.67 0.16 -2.80 16 11 C -0.06 -1.66 1.53 -10.77 -0.02 -1.68 16 12 C -0.08 -2.57 2.48 -9.60 -0.02 -2.59 16 13 H 0.07 2.30 8.14 -2.38 -0.02 2.28 16 14 C -0.12 -4.43 5.50 32.06 0.18 -4.25 16 15 C 0.15 7.63 5.89 86.93 0.51 8.14 16 16 N -0.63 -33.38 3.40 -691.58 -2.35 -35.73 16 17 C -0.24 -13.92 10.27 84.03 0.86 -13.06 16 18 H 0.08 4.34 7.83 -2.91 -0.02 4.32 16 19 C -0.07 -4.02 5.49 84.86 0.47 -3.56 16 20 N -0.95 -57.77 10.09 21.65 0.22 -57.55 16 21 Si 0.98 46.57 29.55 68.60 2.03 48.59 16 22 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 23 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 24 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 25 C 0.14 5.77 5.89 86.73 0.51 6.28 16 26 C -0.12 -2.66 5.19 30.67 0.16 -2.50 16 27 C 0.09 1.93 6.12 86.36 0.53 2.46 16 28 N -0.34 -6.99 8.67 -49.51 -0.43 -7.42 16 29 O 0.12 1.94 11.18 71.86 0.80 2.74 16 30 H 0.05 0.28 8.14 -2.39 -0.02 0.26 16 31 H 0.09 0.02 8.14 -2.39 -0.02 0.00 16 32 H 0.05 0.28 8.14 -2.38 -0.02 0.26 16 33 H 0.11 0.08 8.14 -2.39 -0.02 0.06 16 34 H 0.12 0.01 8.14 -2.39 -0.02 -0.01 16 35 H 0.19 2.55 8.06 -2.91 -0.02 2.53 16 36 H 0.09 2.14 7.00 -2.39 -0.02 2.12 16 37 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.08 2.01 7.27 -2.38 -0.02 1.99 16 40 H 0.07 1.95 8.11 -2.39 -0.02 1.93 16 41 H 0.08 2.57 8.08 -2.39 -0.02 2.55 16 42 H 0.06 2.33 8.05 -2.39 -0.02 2.31 16 43 H 0.07 4.07 5.87 -2.39 -0.01 4.06 16 44 H -0.02 -1.08 8.14 -2.39 -0.02 -1.10 16 45 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 46 H 0.03 1.15 7.67 -2.39 -0.02 1.13 16 47 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 48 H 0.09 1.89 7.27 -2.39 -0.02 1.87 16 49 H 0.06 1.42 8.14 -2.38 -0.02 1.40 16 50 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 51 H 0.12 2.48 4.23 -10.21 -0.04 2.43 16 Total: -1.00 -73.57 397.65 4.83 -68.73 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: 0.89 Total: 12.41 kcal Atomic # 6 Polarization: -3.38 SS G_CDS: 6.18 Total: 2.80 kcal Atomic # 7 Polarization: -112.42 SS G_CDS: -5.00 Total: -117.42 kcal Atomic # 8 Polarization: -15.86 SS G_CDS: 0.74 Total: -15.12 kcal Atomic # 14 Polarization: 46.57 SS G_CDS: 2.03 Total: 48.59 kcal Total: -73.57 4.83 -68.73 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039174132.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.362 kcal (2) G-P(sol) polarization free energy of solvation -73.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.733 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds