Wall clock time and date at job start Wed Apr 1 2020 06:01:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50700 * 109.47274 * 2 1 4 4 O 1.34255 * 126.52194 * 270.18923 * 3 2 1 5 5 C 1.34058 * 108.22751 * 180.26800 * 4 3 2 6 6 N 1.29937 * 109.23771 * 359.72502 * 5 4 3 7 7 C 1.36069 * 108.47723 * 0.02562 * 6 5 4 8 8 C 1.47426 * 126.44540 * 180.02562 * 7 6 5 9 9 O 1.21611 * 119.99619 * 186.78929 * 8 7 6 10 10 N 1.34779 * 120.00124 * 6.78035 * 8 7 6 11 11 C 1.46922 * 120.62870 * 6.85265 * 10 8 7 12 12 C 1.53198 * 108.77432 * 233.62320 * 11 10 8 13 13 C 1.53043 * 109.31181 * 305.36635 * 12 11 10 14 14 C 1.53045 * 109.53549 * 61.36329 * 13 12 11 15 15 C 1.46925 * 120.62905 * 186.86414 * 10 8 7 16 16 H 1.09002 * 109.58651 * 246.30140 * 15 10 8 17 17 C 1.52992 * 109.58687 * 6.59032 * 15 10 8 18 18 H 1.09000 * 110.88887 * 304.21198 * 17 15 10 19 19 C 1.55156 * 111.03922 * 68.11982 * 17 15 10 20 20 C 1.54337 * 103.01938 * 153.39704 * 19 17 15 21 21 N 1.47020 * 107.26771 * 338.13834 * 20 19 17 22 22 C 1.36934 * 125.64983 * 178.85478 * 21 20 19 23 23 H 1.07997 * 120.00136 * 174.86965 * 22 21 20 24 24 C 1.38810 * 119.99981 * 354.86959 * 22 21 20 25 25 N 1.31621 * 119.99986 * 214.01364 * 24 22 21 26 26 Si 1.86798 * 120.00049 * 34.01195 * 24 22 21 27 27 H 1.48503 * 109.46994 * 174.37036 * 26 24 22 28 28 H 1.48502 * 109.47146 * 54.37287 * 26 24 22 29 29 H 1.48499 * 109.47228 * 294.37326 * 26 24 22 30 30 C 1.47422 * 108.70018 * 358.58803 * 21 20 19 31 31 H 1.09001 * 109.46849 * 60.00091 * 1 2 3 32 32 H 1.08998 * 109.47153 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47015 * 300.00312 * 1 2 3 34 34 H 1.08998 * 109.47015 * 239.99688 * 2 1 3 35 35 H 1.09001 * 109.46849 * 119.99909 * 2 1 3 36 36 H 1.07995 * 125.38019 * 179.76938 * 5 4 3 37 37 H 1.08999 * 109.58853 * 353.40904 * 11 10 8 38 38 H 1.09005 * 109.59185 * 113.69383 * 11 10 8 39 39 H 1.09004 * 109.49216 * 65.31344 * 12 11 10 40 40 H 1.08992 * 109.49916 * 185.37773 * 12 11 10 41 41 H 1.09001 * 109.45554 * 181.38075 * 13 12 11 42 42 H 1.09000 * 109.45592 * 301.34252 * 13 12 11 43 43 H 1.09001 * 109.49237 * 178.68603 * 14 13 12 44 44 H 1.08999 * 109.49897 * 58.58805 * 14 13 12 45 45 H 1.09001 * 110.71868 * 271.95133 * 19 17 15 46 46 H 1.08999 * 110.72046 * 35.05123 * 19 17 15 47 47 H 1.09004 * 109.98984 * 218.66659 * 20 19 17 48 48 H 1.08996 * 109.78475 * 97.49703 * 20 19 17 49 49 H 0.97003 * 120.00035 * 5.01233 * 25 24 22 50 50 H 1.09004 * 110.36501 * 143.19709 * 30 21 20 51 51 H 1.09002 * 110.36902 * 265.51782 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 2.2954 2.1753 -1.0789 5 6 2.7266 3.3728 -0.6581 6 7 2.7357 3.3923 0.6411 7 6 2.3028 2.1843 1.0935 8 6 2.1585 1.7775 2.5032 9 8 1.8781 0.6266 2.7782 10 7 2.3375 2.6811 3.4871 11 6 2.5283 4.1033 3.1716 12 6 3.8134 4.5905 3.8485 13 6 3.7446 4.2825 5.3461 14 6 3.6329 2.7702 5.5530 15 6 2.3458 2.2625 4.8954 16 1 1.4806 2.6843 5.4071 17 6 2.2960 0.7356 4.9769 18 1 1.4317 0.3457 4.4393 19 6 3.6113 0.1063 4.4465 20 6 3.6824 -1.2381 5.2012 21 7 2.8490 -1.1074 6.4052 22 6 2.6287 -2.0894 7.3338 23 1 2.0661 -1.8696 8.2291 24 6 3.1285 -3.3673 7.1245 25 7 2.4542 -4.4153 7.5482 26 14 4.7581 -3.5998 6.2414 27 1 5.1335 -5.0364 6.2653 28 1 5.8089 -2.8022 6.9233 29 1 4.6274 -3.1457 4.8336 30 6 2.2949 0.2580 6.4506 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3633 0.5139 0.8899 34 1 1.8933 -0.5139 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 3.0194 4.1922 -1.2979 37 1 2.6132 4.2300 2.0923 38 1 1.6782 4.6769 3.5410 39 1 4.6711 4.0795 3.4111 40 1 3.9167 5.6655 3.7021 41 1 4.6472 4.6501 5.8342 42 1 2.8726 4.7735 5.7780 43 1 3.6074 2.5500 6.6202 44 1 4.4924 2.2765 5.0995 45 1 3.5546 -0.0556 3.3701 46 1 4.4670 0.7335 4.6963 47 1 4.7129 -1.4520 5.4851 48 1 3.2967 -2.0373 4.5683 49 1 1.5750 -4.2998 7.9414 50 1 1.2782 0.2419 6.8434 51 1 2.9275 0.9041 7.0592 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039209408.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:01:19 Heat of formation + Delta-G solvation = 34.326152 kcal Electronic energy + Delta-G solvation = -33147.493971 eV Core-core repulsion = 29050.135685 eV Total energy + Delta-G solvation = -4097.358286 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -44.47374 -41.84896 -39.10766 -38.28975 -36.10690 -35.16169 -34.87457 -33.69626 -33.01626 -30.75660 -30.26863 -29.40285 -26.97444 -25.64610 -25.21904 -24.46871 -24.16978 -22.83328 -22.44914 -21.74505 -21.02637 -20.15645 -19.48210 -18.32502 -17.85595 -17.43953 -16.93371 -16.80636 -16.75662 -16.23411 -15.91645 -15.53108 -15.48498 -15.33580 -15.05889 -14.87177 -14.75022 -14.71334 -14.18569 -14.14964 -13.99680 -13.56561 -13.35732 -13.21976 -13.00784 -12.82235 -12.71805 -12.48179 -12.42846 -12.32271 -12.07222 -11.91022 -11.87743 -11.81305 -11.66104 -11.49389 -11.30768 -10.88987 -10.69124 -10.51703 -10.05626 -9.94700 -9.44722 -9.10386 -8.69719 -5.34418 0.09102 1.06820 1.42350 1.47147 1.57301 1.69161 1.98711 2.26316 2.55516 2.92122 3.07393 3.39486 3.55704 3.61957 3.75026 3.88045 3.93101 4.02289 4.09115 4.15047 4.19986 4.23638 4.26384 4.30299 4.37658 4.44629 4.54077 4.56025 4.66852 4.72687 4.76992 4.77973 4.88480 4.89482 4.94683 4.98368 5.05694 5.08494 5.13561 5.16162 5.21489 5.23936 5.25583 5.32930 5.45409 5.49943 5.58156 5.66355 5.89333 6.09898 6.35819 6.57547 6.82562 7.19468 7.51549 8.18767 8.79879 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011414 B = 0.004068 C = 0.003315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2452.566049 B = 6881.874688 C = 8445.499048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.051 4.051 3 C 0.044 3.956 4 O -0.197 6.197 5 C 0.198 3.802 6 N -0.482 5.482 7 C -0.091 4.091 8 C 0.584 3.416 9 O -0.538 6.538 10 N -0.587 5.587 11 C 0.062 3.938 12 C -0.120 4.120 13 C -0.116 4.116 14 C -0.135 4.135 15 C 0.166 3.834 16 H 0.080 0.920 17 C -0.086 4.086 18 H 0.100 0.900 19 C -0.107 4.107 20 C 0.122 3.878 21 N -0.628 5.628 22 C -0.333 4.333 23 H 0.050 0.950 24 C -0.064 4.064 25 N -0.940 5.940 26 Si 1.076 2.924 27 H -0.304 1.304 28 H -0.287 1.287 29 H -0.251 1.251 30 C 0.133 3.867 31 H 0.069 0.931 32 H 0.078 0.922 33 H 0.041 0.959 34 H 0.105 0.895 35 H 0.097 0.903 36 H 0.307 0.693 37 H 0.154 0.846 38 H 0.064 0.936 39 H 0.053 0.947 40 H 0.095 0.905 41 H 0.074 0.926 42 H 0.071 0.929 43 H 0.073 0.927 44 H 0.062 0.938 45 H 0.081 0.919 46 H 0.072 0.928 47 H 0.015 0.985 48 H 0.017 0.983 49 H 0.251 0.749 50 H 0.027 0.973 51 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.884 25.238 -21.728 33.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.088 4.088 3 C -0.013 4.013 4 O -0.084 6.084 5 C -0.029 4.029 6 N -0.211 5.211 7 C -0.209 4.209 8 C 0.373 3.627 9 O -0.417 6.417 10 N -0.318 5.318 11 C -0.059 4.059 12 C -0.158 4.158 13 C -0.153 4.153 14 C -0.173 4.173 15 C 0.063 3.937 16 H 0.098 0.902 17 C -0.105 4.105 18 H 0.117 0.883 19 C -0.144 4.144 20 C -0.002 4.002 21 N -0.355 5.355 22 C -0.461 4.461 23 H 0.068 0.932 24 C -0.260 4.260 25 N -0.582 5.582 26 Si 0.903 3.097 27 H -0.232 1.232 28 H -0.215 1.215 29 H -0.176 1.176 30 C 0.007 3.993 31 H 0.088 0.912 32 H 0.096 0.904 33 H 0.060 0.940 34 H 0.123 0.877 35 H 0.115 0.885 36 H 0.321 0.679 37 H 0.170 0.830 38 H 0.083 0.917 39 H 0.072 0.928 40 H 0.113 0.887 41 H 0.092 0.908 42 H 0.089 0.911 43 H 0.091 0.909 44 H 0.081 0.919 45 H 0.099 0.901 46 H 0.090 0.910 47 H 0.033 0.967 48 H 0.035 0.965 49 H 0.060 0.940 50 H 0.046 0.954 51 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 1.980 23.985 -21.605 32.342 hybrid contribution -1.449 0.143 1.105 1.828 sum 0.531 24.128 -20.499 31.665 Atomic orbital electron populations 1.21646 0.92602 1.03409 1.01820 1.20415 0.97459 0.85324 1.05638 1.23849 0.98262 0.95758 0.83392 1.84415 1.63639 1.24750 1.35577 1.29375 0.95199 0.87065 0.91226 1.70196 1.19866 1.20120 1.10903 1.21423 1.11839 0.92604 0.94999 1.17197 0.77472 0.84658 0.83405 1.90812 1.49085 1.19872 1.81954 1.47917 1.69963 1.09044 1.04913 1.23058 0.97597 0.78019 1.07241 1.21786 0.97179 1.02109 0.94759 1.21546 1.02852 0.93918 0.97008 1.22113 0.96873 0.97496 1.00780 1.21067 0.98766 0.92991 0.80920 0.90191 1.22771 1.00093 0.93672 0.93938 0.88257 1.22867 0.97438 0.94286 0.99848 1.21836 0.92427 0.97831 0.88136 1.44894 1.56329 1.10634 1.23637 1.19897 1.33931 0.90414 1.01837 0.93209 1.26726 1.07026 0.90280 1.01981 1.71022 1.13231 1.30600 1.43354 0.83894 0.74146 0.74014 0.77695 1.23208 1.21456 1.17604 1.21894 0.95934 0.85205 0.96218 0.91193 0.90352 0.93994 0.87672 0.88481 0.67875 0.82970 0.91720 0.92838 0.88680 0.90764 0.91063 0.90864 0.91928 0.90111 0.90970 0.96702 0.96529 0.94042 0.95426 0.94820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.56 9.90 71.98 0.71 -1.85 16 2 C -0.05 -1.03 6.00 29.85 0.18 -0.85 16 3 C 0.04 0.91 6.69 25.18 0.17 1.08 16 4 O -0.20 -2.97 10.73 0.33 0.00 -2.96 16 5 C 0.20 1.97 13.19 130.52 1.72 3.70 16 6 N -0.48 -8.33 7.75 -305.14 -2.37 -10.70 16 7 C -0.09 -2.12 6.72 40.41 0.27 -1.85 16 8 C 0.58 16.81 6.85 86.66 0.59 17.40 16 9 O -0.54 -18.66 8.46 -4.07 -0.03 -18.69 16 10 N -0.59 -15.02 2.96 -798.87 -2.36 -17.39 16 11 C 0.06 1.18 6.32 86.37 0.55 1.72 16 12 C -0.12 -1.96 6.08 30.67 0.19 -1.77 16 13 C -0.12 -2.07 5.88 30.62 0.18 -1.88 16 14 C -0.13 -3.34 4.72 30.67 0.14 -3.20 16 15 C 0.17 4.66 2.81 44.97 0.13 4.79 16 16 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 17 C -0.09 -3.18 2.12 -9.40 -0.02 -3.20 16 18 H 0.10 4.20 5.74 -17.23 -0.10 4.10 16 19 C -0.11 -4.16 5.34 31.79 0.17 -3.99 16 20 C 0.12 5.98 4.56 86.73 0.40 6.37 16 21 N -0.63 -34.03 3.38 -691.97 -2.34 -36.37 16 22 C -0.33 -20.93 10.39 84.03 0.87 -20.05 16 23 H 0.05 3.32 8.06 -2.91 -0.02 3.29 16 24 C -0.06 -4.09 5.43 84.86 0.46 -3.63 16 25 N -0.94 -63.35 13.70 21.65 0.30 -63.05 16 26 Si 1.08 57.05 25.13 68.60 1.72 58.77 16 27 H -0.30 -16.19 7.11 99.48 0.71 -15.49 16 28 H -0.29 -14.55 7.11 99.48 0.71 -13.84 16 29 H -0.25 -12.22 5.04 99.48 0.50 -11.72 16 30 C 0.13 5.85 6.61 86.86 0.57 6.43 16 31 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.10 2.52 6.37 -2.39 -0.02 2.50 16 36 H 0.31 -0.90 8.06 -2.91 -0.02 -0.93 16 37 H 0.15 2.79 3.70 -48.60 -0.18 2.61 16 38 H 0.06 1.12 8.14 -2.38 -0.02 1.10 16 39 H 0.05 1.01 8.14 -2.38 -0.02 0.99 16 40 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 42 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 43 H 0.07 1.92 6.48 -2.39 -0.02 1.91 16 44 H 0.06 1.72 5.68 -2.39 -0.01 1.70 16 45 H 0.08 3.13 5.71 -2.39 -0.01 3.11 16 46 H 0.07 2.56 5.40 -2.39 -0.01 2.55 16 47 H 0.02 0.76 4.94 -2.38 -0.01 0.74 16 48 H 0.02 0.89 6.62 -2.39 -0.02 0.88 16 49 H 0.25 16.91 8.73 -92.71 -0.81 16.10 16 50 H 0.03 1.25 8.14 -2.38 -0.02 1.23 16 51 H 0.03 1.39 6.06 -2.39 -0.01 1.38 16 Total: -1.00 -81.25 372.10 2.66 -78.59 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: 0.45 Total: 12.58 kcal Atomic # 6 Polarization: -8.07 SS G_CDS: 7.28 Total: -0.79 kcal Atomic # 7 Polarization: -120.73 SS G_CDS: -6.77 Total: -127.50 kcal Atomic # 8 Polarization: -21.62 SS G_CDS: -0.03 Total: -21.65 kcal Atomic # 14 Polarization: 57.05 SS G_CDS: 1.72 Total: 58.77 kcal Total: -81.25 2.66 -78.59 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039209408.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.916 kcal (2) G-P(sol) polarization free energy of solvation -81.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.590 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds