Wall clock time and date at job start Wed Apr 1 2020 05:51:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50692 * 109.47182 * 2 1 4 4 N 1.30017 * 127.33186 * 270.03520 * 3 2 1 5 5 O 1.20663 * 112.30172 * 179.97438 * 4 3 2 6 6 C 1.33499 * 113.15436 * 359.71457 * 5 4 3 7 7 C 1.37358 * 106.33963 * 0.45840 * 6 5 4 8 8 C 1.47406 * 128.56528 * 179.85594 * 7 6 5 9 9 O 1.21599 * 119.99940 * 205.16353 * 8 7 6 10 10 N 1.34782 * 119.99517 * 25.15937 * 8 7 6 11 11 C 1.46925 * 120.63273 * 4.64018 * 10 8 7 12 12 C 1.53195 * 108.77182 * 126.39028 * 11 10 8 13 13 C 1.53045 * 109.31059 * 54.63701 * 12 11 10 14 14 C 1.53044 * 109.53743 * 298.63174 * 13 12 11 15 15 C 1.46928 * 120.62460 * 184.64215 * 10 8 7 16 16 H 1.09003 * 109.69980 * 113.75458 * 15 10 8 17 17 C 1.52999 * 109.58817 * 353.39498 * 15 10 8 18 18 H 1.09003 * 110.88614 * 54.97631 * 17 15 10 19 19 C 1.55151 * 111.00724 * 291.09150 * 17 15 10 20 20 C 1.54325 * 102.94681 * 206.42475 * 19 17 15 21 21 N 1.47025 * 107.39621 * 22.11236 * 20 19 17 22 22 C 1.36938 * 125.64479 * 181.09963 * 21 20 19 23 23 H 1.08003 * 119.99744 * 180.02562 * 22 21 20 24 24 C 1.38812 * 119.99936 * 0.03206 * 22 21 20 25 25 N 1.31611 * 120.00308 * 359.97438 * 24 22 21 26 26 Si 1.86799 * 119.99756 * 180.02562 * 24 22 21 27 27 H 1.48497 * 109.47706 * 89.99741 * 26 24 22 28 28 H 1.48505 * 109.46778 * 210.00027 * 26 24 22 29 29 H 1.48500 * 109.47043 * 329.99441 * 26 24 22 30 30 C 1.47741 * 108.53033 * 1.18578 * 21 20 19 31 31 H 1.09006 * 109.47116 * 60.00094 * 1 2 3 32 32 H 1.09001 * 109.47537 * 180.02562 * 1 2 3 33 33 H 1.08995 * 109.47396 * 300.00601 * 1 2 3 34 34 H 1.08994 * 109.46881 * 239.99297 * 2 1 3 35 35 H 1.09003 * 109.46638 * 120.00075 * 2 1 3 36 36 H 1.07995 * 126.83149 * 180.30577 * 6 5 4 37 37 H 1.08997 * 109.58500 * 6.60523 * 11 10 8 38 38 H 1.08991 * 109.70153 * 246.24850 * 11 10 8 39 39 H 1.08993 * 109.49905 * 294.68722 * 12 11 10 40 40 H 1.09003 * 109.52385 * 174.60297 * 12 11 10 41 41 H 1.09000 * 109.45375 * 178.61389 * 13 12 11 42 42 H 1.08996 * 109.44990 * 58.64559 * 13 12 11 43 43 H 1.08996 * 109.49727 * 301.41355 * 14 13 12 44 44 H 1.08996 * 109.49546 * 181.31842 * 14 13 12 45 45 H 1.09000 * 110.72326 * 88.05910 * 19 17 15 46 46 H 1.09003 * 110.71939 * 324.79119 * 19 17 15 47 47 H 1.08991 * 109.88103 * 141.60693 * 20 19 17 48 48 H 1.08996 * 109.88220 * 262.62524 * 20 19 17 49 49 H 0.96996 * 120.00689 * 180.02562 * 25 24 22 50 50 H 1.09003 * 110.28785 * 216.93705 * 30 21 20 51 51 H 1.09002 * 110.43403 * 94.62829 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 7 2.2946 2.1643 -1.0338 5 8 2.6827 3.2631 -0.7209 6 6 2.7402 3.4429 0.6007 7 6 2.3299 2.2619 1.1695 8 6 2.2108 1.9231 2.5992 9 8 2.2820 0.7632 2.9571 10 7 2.0231 2.8991 3.5096 11 6 1.8338 4.2928 3.0847 12 6 0.5431 4.8286 3.7124 13 6 0.6003 4.6361 5.2296 14 6 0.7114 3.1443 5.5525 15 6 2.0039 2.5894 4.9457 16 1 2.8634 3.0504 5.4325 17 6 2.0541 1.0732 5.1442 18 1 2.9150 0.6426 4.6328 19 6 0.7354 0.4064 4.6712 20 6 0.6719 -0.8778 5.5247 21 7 1.5087 -0.6576 6.7133 22 6 1.7334 -1.5683 7.7109 23 1 2.3668 -1.3087 8.5464 24 6 1.1473 -2.8250 7.6484 25 7 0.3752 -3.1412 6.6305 26 14 1.4533 -4.0670 9.0097 27 1 0.4194 -3.9107 10.0641 28 1 1.3861 -5.4411 8.4503 29 1 2.7978 -3.8368 9.5967 30 6 2.0632 0.7104 6.6502 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3634 0.5139 0.8899 34 1 1.8933 -0.5139 -0.8899 35 1 1.8933 -0.5139 0.8900 36 1 3.0503 4.3379 1.1194 37 1 1.7573 4.3364 1.9983 38 1 2.6790 4.8960 3.4161 39 1 -0.3108 4.2846 3.3086 40 1 0.4399 5.8893 3.4838 41 1 -0.3064 5.0389 5.6810 42 1 1.4686 5.1598 5.6293 43 1 -0.1442 2.6163 5.1314 44 1 0.7285 3.0064 6.6335 45 1 0.7858 0.1622 3.6101 46 1 -0.1188 1.0506 4.8796 47 1 -0.3573 -1.0716 5.8266 48 1 1.0556 -1.7225 4.9525 49 1 -0.0347 -4.0192 6.5869 50 1 3.0821 0.7235 7.0374 51 1 1.4345 1.4021 7.2109 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039228151.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:51:40 Heat of formation + Delta-G solvation = 70.671438 kcal Electronic energy + Delta-G solvation = -32998.258002 eV Core-core repulsion = 28902.475765 eV Total energy + Delta-G solvation = -4095.782236 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -45.95969 -41.87840 -38.87382 -38.21520 -36.26051 -35.14488 -34.12597 -33.06381 -32.25697 -32.14184 -30.62133 -28.97744 -27.20817 -26.10798 -25.56116 -24.79513 -24.15690 -22.23534 -22.09185 -21.87379 -21.04349 -19.90818 -18.87233 -18.75093 -18.30414 -17.64244 -17.01733 -16.83169 -16.52416 -16.30647 -15.75264 -15.69166 -15.33813 -15.13206 -14.81782 -14.75120 -14.38054 -14.24767 -14.08575 -13.88822 -13.84285 -13.67192 -13.41266 -13.01611 -12.85904 -12.71652 -12.66478 -12.55679 -12.26430 -12.04008 -12.02255 -11.91714 -11.83472 -11.61604 -11.53896 -11.45151 -11.26424 -11.16507 -10.89976 -10.71148 -10.49297 -10.11316 -9.38617 -8.84138 -7.82348 -5.18524 0.15646 0.75554 1.42264 1.46006 1.54540 1.72966 2.11688 2.30668 2.49868 2.98211 3.31147 3.33971 3.53801 3.75523 3.83548 3.89824 3.91671 4.03769 4.13047 4.18987 4.21324 4.27207 4.29762 4.31874 4.39356 4.45855 4.56572 4.60081 4.67410 4.72377 4.79668 4.81160 4.91165 4.92765 4.96984 5.03417 5.09178 5.15655 5.18617 5.24762 5.27538 5.31192 5.36712 5.46487 5.55462 5.58423 5.73257 5.79467 5.88148 6.21072 6.45499 7.11213 7.21992 7.28339 7.80569 8.48014 9.27951 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012609 B = 0.003568 C = 0.002981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2220.049739 B = 7846.615364 C = 9392.069559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.052 4.052 3 C 0.053 3.947 4 N -0.375 5.375 5 O 0.103 5.897 6 C 0.012 3.988 7 C -0.266 4.266 8 C 0.572 3.428 9 O -0.533 6.533 10 N -0.594 5.594 11 C 0.081 3.919 12 C -0.131 4.131 13 C -0.113 4.113 14 C -0.138 4.138 15 C 0.172 3.828 16 H 0.095 0.905 17 C -0.074 4.074 18 H 0.080 0.920 19 C -0.116 4.116 20 C 0.195 3.805 21 N -0.627 5.627 22 C -0.243 4.243 23 H 0.084 0.916 24 C -0.072 4.072 25 N -0.954 5.954 26 Si 0.981 3.019 27 H -0.283 1.283 28 H -0.295 1.295 29 H -0.267 1.267 30 C 0.128 3.872 31 H 0.064 0.936 32 H 0.072 0.928 33 H 0.043 0.957 34 H 0.090 0.910 35 H 0.079 0.921 36 H 0.281 0.719 37 H 0.106 0.894 38 H 0.109 0.891 39 H 0.049 0.951 40 H 0.108 0.892 41 H 0.069 0.931 42 H 0.083 0.917 43 H 0.053 0.947 44 H 0.071 0.929 45 H 0.082 0.918 46 H 0.057 0.943 47 H -0.007 1.007 48 H -0.006 1.006 49 H 0.244 0.756 50 H 0.034 0.966 51 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.249 24.481 -12.905 27.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.091 4.091 3 C -0.108 4.108 4 N -0.081 5.081 5 O 0.042 5.958 6 C -0.069 4.069 7 C -0.274 4.274 8 C 0.361 3.639 9 O -0.413 6.413 10 N -0.327 5.327 11 C -0.039 4.039 12 C -0.169 4.169 13 C -0.151 4.151 14 C -0.176 4.176 15 C 0.069 3.931 16 H 0.113 0.887 17 C -0.094 4.094 18 H 0.098 0.902 19 C -0.153 4.153 20 C 0.070 3.930 21 N -0.353 5.353 22 C -0.372 4.372 23 H 0.101 0.899 24 C -0.264 4.264 25 N -0.604 5.604 26 Si 0.809 3.191 27 H -0.210 1.210 28 H -0.222 1.222 29 H -0.191 1.191 30 C 0.003 3.997 31 H 0.083 0.917 32 H 0.091 0.909 33 H 0.063 0.937 34 H 0.109 0.891 35 H 0.098 0.902 36 H 0.296 0.704 37 H 0.124 0.876 38 H 0.127 0.873 39 H 0.068 0.932 40 H 0.126 0.874 41 H 0.088 0.912 42 H 0.101 0.899 43 H 0.072 0.928 44 H 0.089 0.911 45 H 0.100 0.900 46 H 0.075 0.925 47 H 0.011 0.989 48 H 0.012 0.988 49 H 0.053 0.947 50 H 0.053 0.947 51 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 3.192 23.524 -13.981 27.550 hybrid contribution -0.279 -1.783 1.680 2.466 sum 2.913 21.741 -12.301 25.149 Atomic orbital electron populations 1.21612 0.93106 1.02991 1.01627 1.20020 0.97141 0.87869 1.04034 1.24956 0.99756 0.99023 0.87097 1.73657 1.17337 0.93341 1.23801 1.84554 1.61382 1.25733 1.24110 1.27530 0.96708 0.99892 0.82738 1.22356 1.13976 0.96164 0.94879 1.17231 0.77849 0.85080 0.83728 1.90892 1.49755 1.21103 1.79500 1.47905 1.70804 1.08574 1.05379 1.22627 0.99873 0.79867 1.01572 1.21917 0.96886 1.02804 0.95300 1.21517 1.03269 0.93821 0.96471 1.22134 0.96888 0.97643 1.00917 1.21067 0.98954 0.93493 0.79626 0.88719 1.22557 0.99079 0.94137 0.93589 0.90223 1.23213 0.96529 0.95805 0.99772 1.20761 0.91957 0.93821 0.86481 1.44864 1.55958 1.11583 1.22929 1.19532 1.24431 0.93414 0.99804 0.89859 1.25730 1.00163 0.99752 1.00793 1.70268 1.37021 1.20759 1.32316 0.85036 0.78197 0.77768 0.78096 1.20997 1.22207 1.19139 1.22007 0.96002 0.85868 0.95834 0.91730 0.90873 0.93734 0.89142 0.90218 0.70381 0.87643 0.87277 0.93250 0.87404 0.91198 0.89880 0.92831 0.91081 0.90022 0.92501 0.98903 0.98815 0.94677 0.94728 0.94908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.27 9.89 71.98 0.71 -2.56 16 2 C -0.05 -1.38 6.43 29.85 0.19 -1.18 16 3 C 0.05 1.35 6.83 45.15 0.31 1.66 16 4 N -0.38 -8.76 12.01 -44.77 -0.54 -9.30 16 5 O 0.10 1.75 11.06 76.93 0.85 2.60 16 6 C 0.01 0.15 10.05 67.61 0.68 0.83 16 7 C -0.27 -5.82 5.99 -18.74 -0.11 -5.94 16 8 C 0.57 15.44 7.26 86.66 0.63 16.07 16 9 O -0.53 -19.80 8.85 -4.03 -0.04 -19.84 16 10 N -0.59 -12.22 2.96 -798.91 -2.36 -14.59 16 11 C 0.08 0.76 5.41 86.36 0.47 1.23 16 12 C -0.13 -1.32 6.08 30.67 0.19 -1.13 16 13 C -0.11 -1.53 5.88 30.62 0.18 -1.35 16 14 C -0.14 -3.14 4.72 30.67 0.14 -3.00 16 15 C 0.17 4.29 2.80 44.97 0.13 4.42 16 16 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 17 C -0.07 -2.79 2.12 -9.41 -0.02 -2.81 16 18 H 0.08 3.44 6.05 -3.25 -0.02 3.43 16 19 C -0.12 -4.99 5.32 31.78 0.17 -4.82 16 20 C 0.20 11.01 5.37 86.73 0.47 11.48 16 21 N -0.63 -35.43 3.41 -691.18 -2.35 -37.78 16 22 C -0.24 -14.66 10.29 84.03 0.86 -13.79 16 23 H 0.08 4.74 7.83 -2.91 -0.02 4.72 16 24 C -0.07 -4.40 5.49 84.86 0.47 -3.93 16 25 N -0.95 -62.23 10.31 21.65 0.22 -62.01 16 26 Si 0.98 48.51 29.55 68.60 2.03 50.54 16 27 H -0.28 -13.58 7.11 99.48 0.71 -12.88 16 28 H -0.30 -14.69 7.11 99.48 0.71 -13.98 16 29 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 30 C 0.13 5.58 6.63 86.79 0.58 6.15 16 31 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 32 H 0.07 1.67 8.14 -2.39 -0.02 1.66 16 33 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 35 H 0.08 2.51 7.08 -2.39 -0.02 2.49 16 36 H 0.28 0.15 6.17 -2.91 -0.02 0.13 16 37 H 0.11 0.62 3.80 -2.39 -0.01 0.61 16 38 H 0.11 0.37 8.14 -2.39 -0.02 0.35 16 39 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.11 0.45 8.14 -2.39 -0.02 0.43 16 41 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 42 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 43 H 0.05 1.49 5.66 -2.39 -0.01 1.48 16 44 H 0.07 1.77 6.50 -2.39 -0.02 1.75 16 45 H 0.08 3.64 5.38 -18.33 -0.10 3.54 16 46 H 0.06 2.29 5.37 -2.39 -0.01 2.28 16 47 H -0.01 -0.45 7.50 -2.39 -0.02 -0.47 16 48 H -0.01 -0.42 7.37 -2.39 -0.02 -0.44 16 49 H 0.24 15.41 8.31 -92.71 -0.77 14.64 16 50 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 51 H 0.03 1.34 6.11 -2.39 -0.01 1.32 16 Total: -1.00 -83.90 378.73 4.70 -79.20 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: 0.86 Total: 9.85 kcal Atomic # 6 Polarization: -4.71 SS G_CDS: 6.03 Total: 1.32 kcal Atomic # 7 Polarization: -118.65 SS G_CDS: -5.03 Total: -123.68 kcal Atomic # 8 Polarization: -18.05 SS G_CDS: 0.82 Total: -17.23 kcal Atomic # 14 Polarization: 48.51 SS G_CDS: 2.03 Total: 50.54 kcal Total: -83.90 4.70 -79.20 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039228151.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.870 kcal (2) G-P(sol) polarization free energy of solvation -83.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.199 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds