Wall clock time and date at job start Wed Apr 1 2020 06:03:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50698 * 109.46795 * 2 1 4 4 N 1.33700 * 126.27360 * 269.97145 * 3 2 1 5 5 C 1.30615 * 108.99438 * 180.02562 * 4 3 2 6 6 O 1.33663 * 109.15570 * 359.75592 * 5 4 3 7 7 C 1.35344 * 107.68451 * 0.39496 * 6 5 4 8 8 C 1.46721 * 126.64488 * 179.87313 * 7 6 5 9 9 O 1.21685 * 120.00247 * 172.16604 * 8 7 6 10 10 N 1.34773 * 119.99964 * 352.16537 * 8 7 6 11 11 C 1.46926 * 120.63089 * 352.68140 * 10 8 7 12 12 C 1.53191 * 108.89631 * 233.51759 * 11 10 8 13 13 C 1.53080 * 109.29414 * 305.57784 * 12 11 10 14 14 C 1.53050 * 109.65667 * 61.15552 * 13 12 11 15 15 C 1.46933 * 120.63046 * 172.66766 * 10 8 7 16 16 H 1.09007 * 109.58174 * 246.19939 * 15 10 8 17 17 C 1.53000 * 109.58684 * 6.47904 * 15 10 8 18 18 H 1.08999 * 110.88286 * 46.88875 * 17 15 10 19 19 C 1.55161 * 111.00515 * 282.96904 * 17 15 10 20 20 C 1.54317 * 102.94312 * 206.42493 * 19 17 15 21 21 N 1.47022 * 107.27064 * 22.19218 * 20 19 17 22 22 C 1.36937 * 125.64575 * 181.02541 * 21 20 19 23 23 H 1.08012 * 119.99561 * 180.02562 * 22 21 20 24 24 C 1.38806 * 120.00631 * 0.04178 * 22 21 20 25 25 N 1.31624 * 119.99391 * 359.97438 * 24 22 21 26 26 Si 1.86792 * 120.00442 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.47296 * 60.00061 * 26 24 22 28 28 H 1.48507 * 109.47407 * 179.97438 * 26 24 22 29 29 H 1.48500 * 109.47036 * 299.99771 * 26 24 22 30 30 C 1.47421 * 108.70336 * 1.06063 * 21 20 19 31 31 H 1.08996 * 109.47532 * 60.00235 * 1 2 3 32 32 H 1.09001 * 109.47040 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.47294 * 299.99748 * 1 2 3 34 34 H 1.09004 * 109.46857 * 239.99946 * 2 1 3 35 35 H 1.08996 * 109.47105 * 120.00089 * 2 1 3 36 36 H 1.07998 * 125.41947 * 180.02562 * 5 4 3 37 37 H 1.08996 * 109.58490 * 353.38083 * 11 10 8 38 38 H 1.09009 * 109.58218 * 113.66113 * 11 10 8 39 39 H 1.08999 * 109.50058 * 65.38805 * 12 11 10 40 40 H 1.08996 * 109.49905 * 185.48749 * 12 11 10 41 41 H 1.08992 * 109.34962 * 301.13077 * 13 12 11 42 42 H 1.09001 * 109.44050 * 181.23074 * 13 12 11 43 43 H 1.08999 * 109.49603 * 178.75039 * 14 13 12 44 44 H 1.09000 * 109.52323 * 58.66311 * 14 13 12 45 45 H 1.09008 * 110.71833 * 324.79095 * 19 17 15 46 46 H 1.09000 * 110.72308 * 88.05578 * 19 17 15 47 47 H 1.08999 * 109.88456 * 262.77683 * 20 19 17 48 48 H 1.08998 * 110.01266 * 141.67676 * 20 19 17 49 49 H 0.97007 * 119.99551 * 180.02562 * 25 24 22 50 50 H 1.09003 * 110.36987 * 217.03382 * 30 21 20 51 51 H 1.09004 * 110.37063 * 94.71395 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 7 2.2964 2.1664 -1.0779 5 6 2.7124 3.3422 -0.6899 6 8 2.7216 3.3854 0.6460 7 6 2.3012 2.1814 1.0991 8 6 2.1567 1.7753 2.5016 9 8 1.6335 0.7116 2.7763 10 7 2.6037 2.5804 3.4857 11 6 3.3783 3.7885 3.1708 12 6 4.6895 3.7575 3.9624 13 6 4.3779 3.5771 5.4502 14 6 3.6482 2.2492 5.6661 15 6 2.3252 2.2668 4.8939 16 1 1.6668 3.0271 5.3143 17 6 1.6531 0.8958 4.9909 18 1 2.1806 0.1606 4.3833 19 6 0.1568 0.9802 4.5889 20 6 -0.4756 -0.1965 5.3614 21 7 0.4167 -0.5092 6.4874 22 6 0.2235 -1.5067 7.4054 23 1 0.9403 -1.6560 8.1995 24 6 -0.8933 -2.3262 7.3155 25 7 -1.7668 -2.1441 6.3479 26 14 -1.1571 -3.6864 8.5682 27 1 -1.2542 -3.0957 9.9272 28 1 -2.4139 -4.4123 8.2536 29 1 -0.0133 -4.6323 8.5201 30 6 1.5532 0.4294 6.4647 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5138 0.8900 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5138 0.8899 36 1 2.9988 4.1522 -1.3444 37 1 3.5964 3.8146 2.1032 38 1 2.8047 4.6729 3.4483 39 1 5.3030 2.9252 3.6176 40 1 5.2275 4.6934 3.8119 41 1 3.7460 4.3980 5.7890 42 1 5.3082 3.5767 6.0182 43 1 3.4473 2.1131 6.7288 44 1 4.2692 1.4294 5.3052 45 1 -0.2755 1.9284 4.9087 46 1 0.0380 0.8442 3.5140 47 1 -0.5652 -1.0639 4.7075 48 1 -1.4588 0.0886 5.7358 49 1 -2.5475 -2.7165 6.2852 50 1 2.4701 -0.0777 6.7650 51 1 1.3569 1.2788 7.1190 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039234696.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:03:14 Heat of formation + Delta-G solvation = 45.521867 kcal Electronic energy + Delta-G solvation = -32972.380054 eV Core-core repulsion = 28875.507250 eV Total energy + Delta-G solvation = -4096.872804 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.64695 -40.61436 -37.61637 -36.88732 -35.76710 -33.36304 -32.89041 -32.74626 -31.08489 -29.74586 -28.89849 -27.22877 -25.60244 -24.45762 -24.22495 -23.52146 -22.89626 -21.63909 -20.76317 -19.79796 -19.66467 -19.61446 -17.40476 -17.06273 -16.84278 -16.53196 -16.12498 -15.19897 -15.12499 -14.90132 -14.51465 -14.36129 -14.11125 -13.95205 -13.71537 -13.56583 -13.35184 -13.19990 -13.03587 -12.68791 -12.21436 -12.07918 -11.90643 -11.65817 -11.49226 -11.32077 -11.25027 -11.08794 -10.99769 -10.91790 -10.81830 -10.72877 -10.64031 -10.56859 -10.06578 -9.95234 -9.75743 -9.57237 -9.49522 -9.07381 -8.82799 -8.49821 -8.35440 -6.65055 -5.56395 -2.89226 0.72635 2.25809 2.29923 2.95634 3.09482 3.48049 3.51713 3.53409 3.84091 4.38681 4.56912 4.61485 4.64724 4.73157 4.80304 4.97267 5.06804 5.20489 5.28064 5.32670 5.42872 5.44304 5.46361 5.54366 5.59544 5.62342 5.70778 5.74547 5.83166 5.86959 5.96935 6.01116 6.02123 6.09041 6.10338 6.13235 6.23800 6.27793 6.35737 6.39573 6.50554 6.62556 6.76857 6.93714 7.06809 7.25680 7.30971 7.45769 7.71560 7.89515 8.03066 8.16216 8.43163 9.37423 9.98472 10.66700 11.54659 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012171 B = 0.003684 C = 0.002935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2300.087379 B = 7599.432704 C = 9537.633606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.050 4.050 3 C 0.078 3.922 4 N -0.490 5.490 5 C 0.182 3.818 6 O -0.190 6.190 7 C -0.104 4.104 8 C 0.587 3.413 9 O -0.466 6.466 10 N -0.598 5.598 11 C 0.098 3.902 12 C -0.133 4.133 13 C -0.121 4.121 14 C -0.131 4.131 15 C 0.162 3.838 16 H 0.073 0.927 17 C -0.097 4.097 18 H 0.107 0.893 19 C -0.135 4.135 20 C 0.183 3.817 21 N -0.604 5.604 22 C -0.226 4.226 23 H 0.075 0.925 24 C -0.009 4.009 25 N -0.920 5.920 26 Si 0.909 3.091 27 H -0.287 1.287 28 H -0.291 1.291 29 H -0.286 1.286 30 C 0.140 3.860 31 H 0.050 0.950 32 H 0.066 0.934 33 H 0.062 0.938 34 H 0.078 0.922 35 H 0.100 0.900 36 H 0.251 0.749 37 H 0.098 0.902 38 H 0.068 0.932 39 H 0.065 0.935 40 H 0.073 0.927 41 H 0.063 0.937 42 H 0.065 0.935 43 H 0.082 0.918 44 H 0.068 0.932 45 H 0.037 0.963 46 H 0.084 0.916 47 H 0.044 0.956 48 H 0.034 0.966 49 H 0.250 0.750 50 H 0.033 0.967 51 H 0.010 0.990 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.074 16.205 -12.923 24.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.088 4.088 3 C -0.045 4.045 4 N -0.218 5.218 5 C -0.043 4.043 6 O -0.077 6.077 7 C -0.159 4.159 8 C 0.374 3.626 9 O -0.341 6.341 10 N -0.331 5.331 11 C -0.025 4.025 12 C -0.171 4.171 13 C -0.158 4.158 14 C -0.169 4.169 15 C 0.060 3.940 16 H 0.091 0.909 17 C -0.116 4.116 18 H 0.125 0.875 19 C -0.173 4.173 20 C 0.058 3.942 21 N -0.330 5.330 22 C -0.354 4.354 23 H 0.092 0.908 24 C -0.205 4.205 25 N -0.568 5.568 26 Si 0.740 3.260 27 H -0.213 1.213 28 H -0.217 1.217 29 H -0.213 1.213 30 C 0.013 3.987 31 H 0.069 0.931 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.096 0.904 35 H 0.118 0.882 36 H 0.267 0.733 37 H 0.116 0.884 38 H 0.087 0.913 39 H 0.084 0.916 40 H 0.092 0.908 41 H 0.082 0.918 42 H 0.083 0.917 43 H 0.101 0.899 44 H 0.087 0.913 45 H 0.056 0.944 46 H 0.102 0.898 47 H 0.062 0.938 48 H 0.052 0.948 49 H 0.061 0.939 50 H 0.052 0.948 51 H 0.028 0.972 Dipole moment (debyes) X Y Z Total from point charges 12.560 15.329 -13.302 23.868 hybrid contribution -0.015 -0.062 1.159 1.161 sum 12.545 15.267 -12.143 23.193 Atomic orbital electron populations 1.21633 0.93454 1.02652 1.01961 1.20146 0.96968 0.87486 1.04186 1.22088 0.97792 0.98348 0.86275 1.70333 1.16578 1.03278 1.31644 1.28332 0.98011 0.97640 0.80272 1.84647 1.64915 1.34342 1.23753 1.23384 1.11048 0.84703 0.96714 1.16602 0.80031 0.84980 0.80954 1.90998 1.41859 1.21689 1.79581 1.47902 1.53846 1.24862 1.06511 1.22066 0.92133 0.87155 1.01124 1.21913 0.96822 1.02309 0.96046 1.21554 1.00584 0.98062 0.95613 1.22013 0.96202 0.97494 1.01232 1.21433 0.95802 0.98613 0.78194 0.90949 1.22853 0.97109 0.94041 0.97597 0.87514 1.23285 0.94070 0.98802 1.01147 1.21073 0.92077 0.93139 0.87908 1.44462 1.22487 1.35027 1.31069 1.19005 1.05506 1.06248 1.04688 0.90759 1.24782 0.97437 0.99663 0.98663 1.69997 1.13237 1.40685 1.32877 0.86241 0.77084 0.81953 0.80721 1.21342 1.21676 1.21282 1.21613 0.91421 0.92508 0.93192 0.93126 0.91476 0.91880 0.90389 0.88214 0.73285 0.88430 0.91350 0.91577 0.90836 0.91807 0.91663 0.89942 0.91311 0.94435 0.89801 0.93782 0.94777 0.93917 0.94828 0.97224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 9.89 37.16 0.37 -1.44 16 2 C -0.05 -0.65 5.85 -27.88 -0.16 -0.81 16 3 C 0.08 1.03 6.41 -82.46 -0.53 0.50 16 4 N -0.49 -5.78 11.26 -10.88 -0.12 -5.90 16 5 C 0.18 1.51 13.21 52.24 0.69 2.20 16 6 O -0.19 -1.91 7.47 4.43 0.03 -1.88 16 7 C -0.10 -1.35 6.79 -36.84 -0.25 -1.60 16 8 C 0.59 8.63 7.30 -12.84 -0.09 8.53 16 9 O -0.47 -8.14 7.84 5.20 0.04 -8.10 16 10 N -0.60 -7.74 2.97 -166.73 -0.50 -8.23 16 11 C 0.10 0.94 6.11 -3.71 -0.02 0.91 16 12 C -0.13 -1.10 6.09 -26.59 -0.16 -1.26 16 13 C -0.12 -1.10 5.88 -26.66 -0.16 -1.26 16 14 C -0.13 -1.58 4.89 -26.61 -0.13 -1.71 16 15 C 0.16 2.30 2.56 -67.60 -0.17 2.13 16 16 H 0.07 1.04 7.89 -51.93 -0.41 0.63 16 17 C -0.10 -1.80 1.90 -88.47 -0.17 -1.97 16 18 H 0.11 2.19 5.98 -51.98 -0.31 1.88 16 19 C -0.14 -2.81 5.54 -24.90 -0.14 -2.95 16 20 C 0.18 4.79 5.38 -3.07 -0.02 4.78 16 21 N -0.60 -16.35 3.39 -170.08 -0.58 -16.93 16 22 C -0.23 -6.59 10.28 -15.06 -0.15 -6.75 16 23 H 0.07 2.08 7.83 -52.48 -0.41 1.67 16 24 C -0.01 -0.28 5.49 -17.43 -0.10 -0.37 16 25 N -0.92 -28.28 10.31 55.49 0.57 -27.70 16 26 Si 0.91 22.90 29.55 -169.99 -5.02 17.88 16 27 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 28 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 29 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 30 C 0.14 3.00 5.37 -2.53 -0.01 2.99 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.10 1.43 6.65 -51.93 -0.35 1.08 16 36 H 0.25 0.66 8.06 -52.49 -0.42 0.23 16 37 H 0.10 0.89 4.28 -52.63 -0.23 0.67 16 38 H 0.07 0.60 8.14 -51.92 -0.42 0.18 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 42 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.08 1.02 7.23 -51.93 -0.38 0.64 16 44 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 45 H 0.04 0.75 7.86 -51.92 -0.41 0.34 16 46 H 0.08 1.74 5.48 -52.32 -0.29 1.45 16 47 H 0.04 1.29 7.38 -51.93 -0.38 0.91 16 48 H 0.03 0.99 7.50 -51.93 -0.39 0.60 16 49 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 50 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 51 H 0.01 0.21 7.89 -51.93 -0.41 -0.20 16 LS Contribution 384.93 15.07 5.80 5.80 Total: -1.00 -34.33 384.93 -9.14 -43.47 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: -8.16 Total: -0.34 kcal Atomic # 6 Polarization: 3.14 SS G_CDS: -1.21 Total: 1.93 kcal Atomic # 7 Polarization: -58.14 SS G_CDS: -0.62 Total: -58.76 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: 0.07 Total: -9.97 kcal Atomic # 14 Polarization: 22.90 SS G_CDS: -5.02 Total: 17.88 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.33 -9.14 -43.47 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039234696.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.991 kcal (2) G-P(sol) polarization free energy of solvation -34.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.470 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds