Wall clock time and date at job start Wed Apr 1 2020 06:03:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50698 * 109.46795 * 2 1 4 4 N 1.33700 * 126.27360 * 269.97145 * 3 2 1 5 5 C 1.30615 * 108.99438 * 180.02562 * 4 3 2 6 6 O 1.33663 * 109.15570 * 359.75592 * 5 4 3 7 7 C 1.35344 * 107.68451 * 0.39496 * 6 5 4 8 8 C 1.46721 * 126.64488 * 179.87313 * 7 6 5 9 9 O 1.21685 * 120.00247 * 172.16604 * 8 7 6 10 10 N 1.34773 * 119.99964 * 352.16537 * 8 7 6 11 11 C 1.46926 * 120.63089 * 352.68140 * 10 8 7 12 12 C 1.53191 * 108.89631 * 233.51759 * 11 10 8 13 13 C 1.53080 * 109.29414 * 305.57784 * 12 11 10 14 14 C 1.53050 * 109.65667 * 61.15552 * 13 12 11 15 15 C 1.46933 * 120.63046 * 172.66766 * 10 8 7 16 16 H 1.09007 * 109.58174 * 246.19939 * 15 10 8 17 17 C 1.53000 * 109.58684 * 6.47904 * 15 10 8 18 18 H 1.08999 * 110.88286 * 46.88875 * 17 15 10 19 19 C 1.55161 * 111.00515 * 282.96904 * 17 15 10 20 20 C 1.54317 * 102.94312 * 206.42493 * 19 17 15 21 21 N 1.47022 * 107.27064 * 22.19218 * 20 19 17 22 22 C 1.36937 * 125.64575 * 181.02541 * 21 20 19 23 23 H 1.08012 * 119.99561 * 180.02562 * 22 21 20 24 24 C 1.38806 * 120.00631 * 0.04178 * 22 21 20 25 25 N 1.31624 * 119.99391 * 359.97438 * 24 22 21 26 26 Si 1.86792 * 120.00442 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.47296 * 60.00061 * 26 24 22 28 28 H 1.48507 * 109.47407 * 179.97438 * 26 24 22 29 29 H 1.48500 * 109.47036 * 299.99771 * 26 24 22 30 30 C 1.47421 * 108.70336 * 1.06063 * 21 20 19 31 31 H 1.08996 * 109.47532 * 60.00235 * 1 2 3 32 32 H 1.09001 * 109.47040 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.47294 * 299.99748 * 1 2 3 34 34 H 1.09004 * 109.46857 * 239.99946 * 2 1 3 35 35 H 1.08996 * 109.47105 * 120.00089 * 2 1 3 36 36 H 1.07998 * 125.41947 * 180.02562 * 5 4 3 37 37 H 1.08996 * 109.58490 * 353.38083 * 11 10 8 38 38 H 1.09009 * 109.58218 * 113.66113 * 11 10 8 39 39 H 1.08999 * 109.50058 * 65.38805 * 12 11 10 40 40 H 1.08996 * 109.49905 * 185.48749 * 12 11 10 41 41 H 1.08992 * 109.34962 * 301.13077 * 13 12 11 42 42 H 1.09001 * 109.44050 * 181.23074 * 13 12 11 43 43 H 1.08999 * 109.49603 * 178.75039 * 14 13 12 44 44 H 1.09000 * 109.52323 * 58.66311 * 14 13 12 45 45 H 1.09008 * 110.71833 * 324.79095 * 19 17 15 46 46 H 1.09000 * 110.72308 * 88.05578 * 19 17 15 47 47 H 1.08999 * 109.88456 * 262.77683 * 20 19 17 48 48 H 1.08998 * 110.01266 * 141.67676 * 20 19 17 49 49 H 0.97007 * 119.99551 * 180.02562 * 25 24 22 50 50 H 1.09003 * 110.36987 * 217.03382 * 30 21 20 51 51 H 1.09004 * 110.37063 * 94.71395 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 7 2.2964 2.1664 -1.0779 5 6 2.7124 3.3422 -0.6899 6 8 2.7216 3.3854 0.6460 7 6 2.3012 2.1814 1.0991 8 6 2.1567 1.7753 2.5016 9 8 1.6335 0.7116 2.7763 10 7 2.6037 2.5804 3.4857 11 6 3.3783 3.7885 3.1708 12 6 4.6895 3.7575 3.9624 13 6 4.3779 3.5771 5.4502 14 6 3.6482 2.2492 5.6661 15 6 2.3252 2.2668 4.8939 16 1 1.6668 3.0271 5.3143 17 6 1.6531 0.8958 4.9909 18 1 2.1806 0.1606 4.3833 19 6 0.1568 0.9802 4.5889 20 6 -0.4756 -0.1965 5.3614 21 7 0.4167 -0.5092 6.4874 22 6 0.2235 -1.5067 7.4054 23 1 0.9403 -1.6560 8.1995 24 6 -0.8933 -2.3262 7.3155 25 7 -1.7668 -2.1441 6.3479 26 14 -1.1571 -3.6864 8.5682 27 1 -1.2542 -3.0957 9.9272 28 1 -2.4139 -4.4123 8.2536 29 1 -0.0133 -4.6323 8.5201 30 6 1.5532 0.4294 6.4647 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5138 0.8900 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5138 0.8899 36 1 2.9988 4.1522 -1.3444 37 1 3.5964 3.8146 2.1032 38 1 2.8047 4.6729 3.4483 39 1 5.3030 2.9252 3.6176 40 1 5.2275 4.6934 3.8119 41 1 3.7460 4.3980 5.7890 42 1 5.3082 3.5767 6.0182 43 1 3.4473 2.1131 6.7288 44 1 4.2692 1.4294 5.3052 45 1 -0.2755 1.9284 4.9087 46 1 0.0380 0.8442 3.5140 47 1 -0.5652 -1.0639 4.7075 48 1 -1.4588 0.0886 5.7358 49 1 -2.5475 -2.7165 6.2852 50 1 2.4701 -0.0777 6.7650 51 1 1.3569 1.2788 7.1190 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039234696.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:03:13 Heat of formation + Delta-G solvation = 22.104687 kcal Electronic energy + Delta-G solvation = -32973.395499 eV Core-core repulsion = 28875.507250 eV Total energy + Delta-G solvation = -4097.888249 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -44.48497 -41.76461 -38.83629 -38.43063 -36.66476 -34.94589 -34.03543 -33.77155 -32.65863 -30.95253 -30.51054 -28.77838 -27.00678 -26.06137 -25.20610 -24.41128 -24.06761 -22.69133 -21.98727 -21.42447 -21.11184 -20.65211 -18.83627 -18.28901 -17.92755 -17.60346 -17.29765 -16.64235 -16.49511 -16.05340 -15.92563 -15.62447 -15.31179 -15.08728 -14.85702 -14.77488 -14.45495 -14.19629 -14.16124 -13.95779 -13.75376 -13.67118 -13.55633 -13.23160 -12.86064 -12.70752 -12.52698 -12.27331 -12.22517 -12.11647 -12.05270 -12.00220 -11.93203 -11.76776 -11.70899 -11.51766 -11.37919 -11.26138 -11.14637 -10.69620 -10.26822 -9.93183 -9.50994 -8.85425 -7.81599 -5.18130 -0.16962 1.37719 1.43510 1.46479 1.48481 1.54627 1.97902 2.08708 2.50888 3.13989 3.33795 3.43633 3.65496 3.66379 3.82785 3.88859 3.98210 4.08278 4.19708 4.24173 4.25791 4.32210 4.36004 4.39687 4.42813 4.49672 4.57908 4.63164 4.69347 4.76692 4.87301 4.91162 4.95022 4.96128 4.98829 5.08276 5.11391 5.14042 5.19259 5.20461 5.27695 5.31385 5.38315 5.45767 5.47642 5.54274 5.71868 5.77429 5.84550 6.21701 6.27296 6.58745 7.06686 7.11962 7.80995 8.47860 9.28548 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012171 B = 0.003684 C = 0.002935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2300.087379 B = 7599.432704 C = 9537.633606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.049 4.049 3 C 0.071 3.929 4 N -0.522 5.522 5 C 0.218 3.782 6 O -0.182 6.182 7 C -0.122 4.122 8 C 0.583 3.417 9 O -0.509 6.509 10 N -0.596 5.596 11 C 0.093 3.907 12 C -0.127 4.127 13 C -0.115 4.115 14 C -0.128 4.128 15 C 0.168 3.832 16 H 0.079 0.921 17 C -0.075 4.075 18 H 0.086 0.914 19 C -0.118 4.118 20 C 0.196 3.804 21 N -0.628 5.628 22 C -0.245 4.245 23 H 0.084 0.916 24 C -0.071 4.071 25 N -0.953 5.953 26 Si 0.982 3.018 27 H -0.274 1.274 28 H -0.294 1.294 29 H -0.276 1.276 30 C 0.137 3.863 31 H 0.060 0.940 32 H 0.067 0.933 33 H 0.038 0.962 34 H 0.090 0.910 35 H 0.078 0.922 36 H 0.309 0.691 37 H 0.106 0.894 38 H 0.084 0.916 39 H 0.056 0.944 40 H 0.104 0.896 41 H 0.074 0.926 42 H 0.080 0.920 43 H 0.079 0.921 44 H 0.057 0.943 45 H 0.048 0.952 46 H 0.085 0.915 47 H -0.001 1.001 48 H -0.004 1.004 49 H 0.245 0.755 50 H 0.038 0.962 51 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.565 19.222 -13.444 28.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.087 4.087 3 C -0.052 4.052 4 N -0.250 5.250 5 C -0.007 4.007 6 O -0.070 6.070 7 C -0.177 4.177 8 C 0.371 3.629 9 O -0.388 6.388 10 N -0.328 5.328 11 C -0.028 4.028 12 C -0.165 4.165 13 C -0.153 4.153 14 C -0.166 4.166 15 C 0.066 3.934 16 H 0.097 0.903 17 C -0.095 4.095 18 H 0.104 0.896 19 C -0.155 4.155 20 C 0.070 3.930 21 N -0.354 5.354 22 C -0.374 4.374 23 H 0.101 0.899 24 C -0.263 4.263 25 N -0.602 5.602 26 Si 0.809 3.191 27 H -0.200 1.200 28 H -0.221 1.221 29 H -0.202 1.202 30 C 0.011 3.989 31 H 0.080 0.920 32 H 0.086 0.914 33 H 0.057 0.943 34 H 0.108 0.892 35 H 0.097 0.903 36 H 0.323 0.677 37 H 0.123 0.877 38 H 0.103 0.897 39 H 0.075 0.925 40 H 0.123 0.877 41 H 0.093 0.907 42 H 0.099 0.901 43 H 0.097 0.903 44 H 0.075 0.925 45 H 0.067 0.933 46 H 0.103 0.897 47 H 0.018 0.982 48 H 0.014 0.986 49 H 0.054 0.946 50 H 0.057 0.943 51 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 15.107 18.396 -13.818 27.524 hybrid contribution -0.734 -0.917 1.210 1.687 sum 14.373 17.479 -12.607 25.905 Atomic orbital electron populations 1.21551 0.93745 1.02520 1.01176 1.20052 0.96688 0.88250 1.03690 1.22081 0.97657 0.98312 0.87106 1.70352 1.18636 1.04720 1.31335 1.29641 0.93732 0.97484 0.79810 1.84643 1.64846 1.32827 1.24677 1.22859 1.13147 0.85943 0.95718 1.16861 0.79448 0.84591 0.81988 1.90969 1.43921 1.23426 1.80491 1.47998 1.53657 1.25669 1.05447 1.22354 0.92522 0.85879 1.02003 1.21909 0.96051 1.03566 0.94972 1.21538 1.00998 0.96152 0.96569 1.21974 0.94923 0.99323 1.00403 1.21235 0.96905 0.95563 0.79729 0.90269 1.22575 0.95632 0.96582 0.94673 0.89560 1.23104 0.95410 0.96616 1.00420 1.20758 0.91183 0.93459 0.87563 1.44810 1.24193 1.35642 1.30761 1.19484 1.05734 1.06883 1.05277 0.89869 1.25733 0.97308 1.02393 1.00893 1.70260 1.13555 1.41602 1.34812 0.85107 0.76790 0.78731 0.78426 1.19991 1.22057 1.20220 1.21813 0.89722 0.91850 0.95472 0.92049 0.91365 0.94255 0.89173 0.90303 0.67667 0.87652 0.89745 0.92481 0.87738 0.90691 0.90136 0.90267 0.92464 0.93338 0.89694 0.98234 0.98570 0.94619 0.94338 0.95800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.63 9.89 71.98 0.71 -2.92 16 2 C -0.05 -1.33 5.85 29.85 0.17 -1.15 16 3 C 0.07 1.85 6.41 41.83 0.27 2.12 16 4 N -0.52 -11.19 11.26 -303.13 -3.41 -14.60 16 5 C 0.22 2.74 13.21 130.42 1.72 4.46 16 6 O -0.18 -3.11 7.47 -7.08 -0.05 -3.16 16 7 C -0.12 -3.05 6.79 24.05 0.16 -2.89 16 8 C 0.58 17.22 7.30 86.46 0.63 17.85 16 9 O -0.51 -18.83 7.84 -4.30 -0.03 -18.86 16 10 N -0.60 -14.63 2.97 -799.63 -2.38 -17.01 16 11 C 0.09 1.48 6.11 86.36 0.53 2.01 16 12 C -0.13 -1.62 6.09 30.68 0.19 -1.43 16 13 C -0.12 -1.69 5.88 30.64 0.18 -1.51 16 14 C -0.13 -2.86 4.89 30.67 0.15 -2.71 16 15 C 0.17 4.63 2.56 44.97 0.11 4.74 16 16 H 0.08 2.12 7.89 -2.38 -0.02 2.10 16 17 C -0.08 -2.88 1.90 -9.40 -0.02 -2.90 16 18 H 0.09 3.73 5.98 -4.67 -0.03 3.70 16 19 C -0.12 -5.14 5.54 31.78 0.18 -4.96 16 20 C 0.20 11.00 5.38 86.73 0.47 11.46 16 21 N -0.63 -35.44 3.39 -692.01 -2.35 -37.79 16 22 C -0.24 -14.73 10.28 84.03 0.86 -13.87 16 23 H 0.08 4.71 7.83 -2.90 -0.02 4.69 16 24 C -0.07 -4.30 5.49 84.86 0.47 -3.84 16 25 N -0.95 -61.74 10.31 21.65 0.22 -61.51 16 26 Si 0.98 48.29 29.55 68.60 2.03 50.32 16 27 H -0.27 -12.83 7.11 99.48 0.71 -12.12 16 28 H -0.29 -14.52 7.11 99.48 0.71 -13.82 16 29 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 30 C 0.14 6.00 5.37 86.85 0.47 6.47 16 31 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.04 1.24 8.14 -2.39 -0.02 1.23 16 34 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 35 H 0.08 2.46 6.65 -2.39 -0.02 2.44 16 36 H 0.31 -0.30 8.06 -2.91 -0.02 -0.32 16 37 H 0.11 1.54 4.28 -13.44 -0.06 1.49 16 38 H 0.08 1.12 8.14 -2.38 -0.02 1.10 16 39 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 41 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 43 H 0.08 1.82 7.23 -2.39 -0.02 1.80 16 44 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 45 H 0.05 1.97 7.86 -2.38 -0.02 1.95 16 46 H 0.09 3.76 5.48 -10.05 -0.06 3.71 16 47 H 0.00 -0.04 7.38 -2.39 -0.02 -0.06 16 48 H 0.00 -0.24 7.50 -2.39 -0.02 -0.26 16 49 H 0.24 15.38 8.31 -92.70 -0.77 14.61 16 50 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 51 H 0.02 1.00 7.89 -2.38 -0.02 0.98 16 Total: -1.00 -80.97 384.93 2.10 -78.87 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: 0.82 Total: 12.82 kcal Atomic # 6 Polarization: 3.68 SS G_CDS: 7.25 Total: 10.93 kcal Atomic # 7 Polarization: -123.00 SS G_CDS: -7.92 Total: -130.92 kcal Atomic # 8 Polarization: -21.93 SS G_CDS: -0.09 Total: -22.02 kcal Atomic # 14 Polarization: 48.29 SS G_CDS: 2.03 Total: 50.32 kcal Total: -80.97 2.10 -78.87 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039234696.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.970 kcal (2) G-P(sol) polarization free energy of solvation -80.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.865 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds