Wall clock time and date at job start Wed Apr 1 2020 05:38:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50697 * 109.46923 * 2 1 4 4 O 1.33503 * 126.82729 * 270.16551 * 3 2 1 5 5 N 1.20655 * 113.15265 * 180.31370 * 4 3 2 6 6 C 1.30016 * 112.30319 * 359.72071 * 5 4 3 7 7 C 1.37363 * 126.83242 * 90.00255 * 3 2 1 8 8 C 1.47400 * 128.56045 * 359.97438 * 7 3 2 9 9 O 1.21608 * 120.00090 * 14.64852 * 8 7 3 10 10 N 1.34770 * 119.99716 * 194.64483 * 8 7 3 11 11 C 1.46930 * 120.63428 * 7.63637 * 10 8 7 12 12 C 1.53191 * 108.77495 * 126.41168 * 11 10 8 13 13 C 1.53043 * 109.31174 * 54.63760 * 12 11 10 14 14 C 1.53067 * 109.66069 * 298.69950 * 13 12 11 15 15 C 1.46929 * 120.63134 * 187.66073 * 10 8 7 16 16 H 1.09004 * 109.58873 * 113.65111 * 15 10 8 17 17 C 1.53000 * 109.58299 * 353.37581 * 15 10 8 18 18 H 1.08994 * 110.63886 * 315.04754 * 17 15 10 19 19 C 1.55156 * 110.72519 * 78.19492 * 17 15 10 20 20 C 1.54905 * 101.58526 * 154.04008 * 19 17 15 21 21 N 1.47429 * 104.83331 * 322.99098 * 20 19 17 22 22 C 1.36935 * 125.64889 * 204.09043 * 21 20 19 23 23 H 1.07997 * 119.99778 * 8.80518 * 22 21 20 24 24 C 1.38813 * 120.00084 * 188.79588 * 22 21 20 25 25 N 1.31624 * 119.99547 * 11.26214 * 24 22 21 26 26 Si 1.86792 * 120.00261 * 191.25634 * 24 22 21 27 27 H 1.48505 * 109.47073 * 84.97923 * 26 24 22 28 28 H 1.48491 * 109.47284 * 204.98036 * 26 24 22 29 29 H 1.48504 * 109.47304 * 324.98464 * 26 24 22 30 30 C 1.47024 * 108.70145 * 24.12518 * 21 20 19 31 31 H 1.08995 * 109.47166 * 300.00171 * 1 2 3 32 32 H 1.09005 * 109.46861 * 59.99908 * 1 2 3 33 33 H 1.08997 * 109.47480 * 179.97438 * 1 2 3 34 34 H 1.08995 * 109.47166 * 239.99829 * 2 1 3 35 35 H 1.08996 * 109.47004 * 119.99847 * 2 1 3 36 36 H 1.08007 * 127.33673 * 180.02562 * 6 5 4 37 37 H 1.08998 * 109.58727 * 246.20214 * 11 10 8 38 38 H 1.09005 * 109.58139 * 6.62626 * 11 10 8 39 39 H 1.08998 * 109.49533 * 174.58981 * 12 11 10 40 40 H 1.09000 * 109.50111 * 294.65674 * 12 11 10 41 41 H 1.09004 * 109.45957 * 58.65312 * 13 12 11 42 42 H 1.08995 * 109.46140 * 178.61156 * 13 12 11 43 43 H 1.09004 * 109.39198 * 301.27690 * 14 13 12 44 44 H 1.08997 * 109.62468 * 181.16609 * 14 13 12 45 45 H 1.09004 * 111.00232 * 35.96072 * 19 17 15 46 46 H 1.08998 * 111.00183 * 272.11971 * 19 17 15 47 47 H 1.09003 * 110.36754 * 81.82615 * 20 19 17 48 48 H 1.09000 * 110.36918 * 204.15113 * 20 19 17 49 49 H 0.97008 * 119.99440 * 179.97438 * 25 24 22 50 50 H 1.08996 * 109.88598 * 239.52526 * 30 21 20 51 51 H 1.09008 * 109.88137 * 118.35509 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 2.2961 2.1763 -1.0686 5 7 2.6933 3.2793 -0.7834 6 6 2.7611 3.4622 0.5020 7 6 2.3068 2.1972 1.0994 8 6 2.1825 1.8468 2.5258 9 8 2.0534 0.6840 2.8573 10 7 2.2120 2.8153 3.4625 11 6 2.1993 4.2325 3.0749 12 6 1.0547 4.9350 3.8118 13 6 1.1996 4.6963 5.3166 14 6 1.1148 3.1965 5.6106 15 6 2.2580 2.4741 4.8909 16 1 3.2125 2.7905 5.3117 17 6 2.0980 0.9622 5.0624 18 1 1.2920 0.5872 4.4317 19 6 3.4287 0.2298 4.7462 20 6 3.2808 -1.0617 5.5885 21 7 2.5996 -0.6312 6.8231 22 6 2.6575 -1.2724 8.0317 23 1 3.3484 -2.0897 8.1768 24 6 1.8284 -0.8717 9.0704 25 7 0.8396 -0.0347 8.8376 26 14 2.1157 -1.5206 10.7983 27 1 3.1359 -0.6827 11.4784 28 1 0.8441 -1.4708 11.5635 29 1 2.5958 -2.9241 10.7266 30 6 1.8473 0.6001 6.5416 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 1.8934 -0.5138 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 3.0821 4.3535 1.0208 37 1 3.1480 4.6946 3.3481 38 1 2.0465 4.3155 1.9988 39 1 1.0933 6.0051 3.6078 40 1 0.1009 4.5335 3.4696 41 1 2.1642 5.0762 5.6533 42 1 0.4004 5.2156 5.8453 43 1 0.1594 2.8113 5.2540 44 1 1.1973 3.0288 6.6844 45 1 4.2857 0.8164 5.0774 46 1 3.5037 -0.0029 3.6840 47 1 2.6740 -1.7944 5.0563 48 1 4.2612 -1.4772 5.8214 49 1 0.2600 0.2450 9.5635 50 1 2.2003 1.4057 7.1853 51 1 0.7832 0.4303 6.7064 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039235866.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:38:57 Heat of formation + Delta-G solvation = 88.219697 kcal Electronic energy + Delta-G solvation = -32920.814443 eV Core-core repulsion = 28825.793156 eV Total energy + Delta-G solvation = -4095.021287 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -45.10945 -40.62443 -37.44655 -36.93090 -34.85135 -34.24840 -32.75959 -32.58295 -31.32973 -30.38087 -28.71585 -27.26414 -25.95849 -24.57340 -24.35507 -23.94744 -23.05867 -21.73689 -20.74995 -19.76844 -19.49076 -19.16676 -17.91291 -17.40527 -16.79760 -16.71484 -15.88128 -15.45462 -15.02427 -14.77677 -14.64868 -14.21305 -14.03066 -13.92147 -13.78041 -13.55280 -13.38505 -13.09177 -12.78291 -12.72437 -12.23429 -12.11657 -12.00806 -11.76163 -11.72693 -11.44826 -11.18926 -11.14475 -11.09065 -10.90685 -10.75109 -10.72981 -10.62114 -10.34367 -10.13094 -9.90744 -9.76832 -9.63830 -9.48726 -9.34597 -8.73393 -8.44850 -8.29785 -6.65057 -5.59060 -2.94069 0.96144 1.57431 2.61223 2.98919 3.19864 3.45631 3.50735 3.52178 3.98017 4.10590 4.43699 4.57492 4.60893 4.71458 4.83871 4.89387 4.98452 5.00166 5.11434 5.13745 5.31827 5.36649 5.43220 5.46979 5.56967 5.58799 5.65939 5.67301 5.70446 5.84399 5.87886 5.89215 5.98153 6.01193 6.11750 6.12868 6.16889 6.30887 6.37845 6.49335 6.65074 6.75947 6.92254 6.95978 6.98029 7.30138 7.49536 7.61129 7.82714 7.94269 7.95352 8.31628 8.40583 9.33178 9.95648 10.65229 11.49572 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014754 B = 0.003356 C = 0.002943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1897.272376 B = 8342.195485 C = 9513.047853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.052 4.052 3 C 0.048 3.952 4 O 0.090 5.910 5 N -0.357 5.357 6 C 0.005 3.995 7 C -0.255 4.255 8 C 0.584 3.416 9 O -0.497 6.497 10 N -0.596 5.596 11 C 0.084 3.916 12 C -0.133 4.133 13 C -0.121 4.121 14 C -0.131 4.131 15 C 0.166 3.834 16 H 0.069 0.931 17 C -0.109 4.109 18 H 0.106 0.894 19 C -0.120 4.120 20 C 0.135 3.865 21 N -0.604 5.604 22 C -0.223 4.223 23 H 0.074 0.926 24 C -0.010 4.010 25 N -0.918 5.918 26 Si 0.907 3.093 27 H -0.290 1.290 28 H -0.292 1.292 29 H -0.282 1.282 30 C 0.175 3.825 31 H 0.062 0.938 32 H 0.056 0.944 33 H 0.073 0.927 34 H 0.089 0.911 35 H 0.120 0.880 36 H 0.210 0.790 37 H 0.069 0.931 38 H 0.096 0.904 39 H 0.071 0.929 40 H 0.066 0.934 41 H 0.061 0.939 42 H 0.064 0.936 43 H 0.067 0.933 44 H 0.091 0.909 45 H 0.044 0.956 46 H 0.081 0.919 47 H 0.017 0.983 48 H 0.030 0.970 49 H 0.249 0.751 50 H 0.019 0.981 51 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.562 10.303 -18.600 21.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.090 4.090 3 C -0.016 4.016 4 O 0.029 5.971 5 N -0.063 5.063 6 C -0.177 4.177 7 C -0.262 4.262 8 C 0.373 3.627 9 O -0.374 6.374 10 N -0.329 5.329 11 C -0.039 4.039 12 C -0.171 4.171 13 C -0.158 4.158 14 C -0.169 4.169 15 C 0.064 3.936 16 H 0.087 0.913 17 C -0.128 4.128 18 H 0.123 0.877 19 C -0.158 4.158 20 C 0.009 3.991 21 N -0.330 5.330 22 C -0.352 4.352 23 H 0.092 0.908 24 C -0.206 4.206 25 N -0.566 5.566 26 Si 0.738 3.262 27 H -0.218 1.218 28 H -0.219 1.219 29 H -0.208 1.208 30 C 0.050 3.950 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.092 0.908 34 H 0.107 0.893 35 H 0.138 0.862 36 H 0.226 0.774 37 H 0.088 0.912 38 H 0.114 0.886 39 H 0.090 0.910 40 H 0.085 0.915 41 H 0.080 0.920 42 H 0.083 0.917 43 H 0.085 0.915 44 H 0.109 0.891 45 H 0.062 0.938 46 H 0.099 0.901 47 H 0.034 0.966 48 H 0.048 0.952 49 H 0.060 0.940 50 H 0.038 0.962 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.653 10.426 -19.288 21.936 hybrid contribution 0.174 -0.139 1.851 1.864 sum 0.827 10.287 -17.438 20.263 Atomic orbital electron populations 1.21718 0.92930 1.03203 1.02446 1.20453 0.97127 0.85443 1.06003 1.24923 0.95579 0.96070 0.85009 1.84554 1.61236 1.17700 1.33563 1.73676 1.16062 0.98853 1.17688 1.26834 1.01825 0.99561 0.89441 1.22349 1.13056 0.94785 0.96047 1.16825 0.78032 0.85338 0.82538 1.90838 1.47858 1.18927 1.79754 1.47844 1.72972 1.05372 1.06748 1.22399 0.99278 0.81426 1.00836 1.21910 0.98752 0.99996 0.96492 1.21553 1.02002 0.97219 0.95046 1.22030 0.98890 0.93747 1.02267 1.21396 0.98177 0.96712 0.77340 0.91321 1.22976 0.99970 0.90405 0.99484 0.87666 1.23071 0.95819 0.97253 0.99692 1.21544 0.95040 0.94554 0.87962 1.44519 1.56326 1.26433 1.05764 1.19058 1.16018 1.13074 0.87052 0.90784 1.24761 0.97173 1.00427 0.98279 1.69971 1.18291 1.37943 1.30358 0.86204 0.76859 0.78297 0.84860 1.21779 1.21856 1.20820 1.21347 0.97454 0.87776 0.88434 0.91857 0.92506 0.90808 0.89255 0.86172 0.77415 0.91249 0.88629 0.91022 0.91501 0.91987 0.91721 0.91472 0.89072 0.93768 0.90122 0.96567 0.95188 0.94029 0.96250 0.92084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.89 37.16 0.37 -0.88 16 2 C -0.05 -0.48 6.20 -27.88 -0.17 -0.65 16 3 C 0.05 0.52 6.80 -34.63 -0.24 0.29 16 4 O 0.09 1.00 11.06 18.63 0.21 1.21 16 5 N -0.36 -4.08 12.01 31.81 0.38 -3.70 16 6 C 0.00 0.05 10.19 -14.73 -0.15 -0.10 16 7 C -0.25 -3.00 6.11 -102.89 -0.63 -3.63 16 8 C 0.58 8.15 7.32 -12.53 -0.09 8.06 16 9 O -0.50 -8.16 8.28 5.27 0.04 -8.12 16 10 N -0.60 -7.74 2.97 -166.48 -0.50 -8.24 16 11 C 0.08 0.78 5.41 -3.71 -0.02 0.76 16 12 C -0.13 -1.22 6.08 -26.61 -0.16 -1.39 16 13 C -0.12 -1.34 5.88 -26.67 -0.16 -1.50 16 14 C -0.13 -1.94 4.82 -26.60 -0.13 -2.07 16 15 C 0.17 2.59 2.51 -67.60 -0.17 2.42 16 16 H 0.07 1.11 7.86 -51.93 -0.41 0.70 16 17 C -0.11 -2.13 1.88 -88.78 -0.17 -2.29 16 18 H 0.11 2.19 5.81 -52.65 -0.31 1.89 16 19 C -0.12 -2.35 5.67 -24.58 -0.14 -2.49 16 20 C 0.13 3.08 7.23 -2.53 -0.02 3.06 16 21 N -0.60 -16.22 3.39 -170.06 -0.58 -16.80 16 22 C -0.22 -6.47 10.24 -15.06 -0.15 -6.62 16 23 H 0.07 2.09 7.85 -52.49 -0.41 1.68 16 24 C -0.01 -0.29 5.41 -17.43 -0.09 -0.39 16 25 N -0.92 -27.22 10.64 55.49 0.59 -26.63 16 26 Si 0.91 22.56 29.57 -169.99 -5.03 17.54 16 27 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 28 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 29 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 30 C 0.18 4.29 4.12 -3.06 -0.01 4.28 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.12 1.31 6.63 -51.93 -0.34 0.96 16 36 H 0.21 1.48 5.82 -52.48 -0.31 1.18 16 37 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.10 0.77 3.36 -51.93 -0.17 0.59 16 39 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 44 H 0.09 1.56 6.66 -51.93 -0.35 1.22 16 45 H 0.04 0.85 7.85 -51.93 -0.41 0.44 16 46 H 0.08 1.50 5.62 -51.93 -0.29 1.21 16 47 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 48 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 49 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 50 H 0.02 0.51 6.73 -51.93 -0.35 0.16 16 51 H 0.06 1.69 6.81 -51.92 -0.35 1.34 16 LS Contribution 382.04 15.07 5.76 5.76 Total: -1.00 -32.58 382.04 -9.16 -41.74 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: -7.91 Total: 0.40 kcal Atomic # 6 Polarization: -1.01 SS G_CDS: -2.13 Total: -3.15 kcal Atomic # 7 Polarization: -55.27 SS G_CDS: -0.10 Total: -55.37 kcal Atomic # 8 Polarization: -7.17 SS G_CDS: 0.25 Total: -6.92 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.03 Total: 17.54 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -32.58 -9.16 -41.74 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039235866.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.962 kcal (2) G-P(sol) polarization free energy of solvation -32.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.742 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds