Wall clock time and date at job start Wed Apr 1 2020 05:38:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50697 * 109.46923 * 2 1 4 4 O 1.33503 * 126.82729 * 270.16551 * 3 2 1 5 5 N 1.20655 * 113.15265 * 180.31370 * 4 3 2 6 6 C 1.30016 * 112.30319 * 359.72071 * 5 4 3 7 7 C 1.37363 * 126.83242 * 90.00255 * 3 2 1 8 8 C 1.47400 * 128.56045 * 359.97438 * 7 3 2 9 9 O 1.21608 * 120.00090 * 14.64852 * 8 7 3 10 10 N 1.34770 * 119.99716 * 194.64483 * 8 7 3 11 11 C 1.46930 * 120.63428 * 7.63637 * 10 8 7 12 12 C 1.53191 * 108.77495 * 126.41168 * 11 10 8 13 13 C 1.53043 * 109.31174 * 54.63760 * 12 11 10 14 14 C 1.53067 * 109.66069 * 298.69950 * 13 12 11 15 15 C 1.46929 * 120.63134 * 187.66073 * 10 8 7 16 16 H 1.09004 * 109.58873 * 113.65111 * 15 10 8 17 17 C 1.53000 * 109.58299 * 353.37581 * 15 10 8 18 18 H 1.08994 * 110.63886 * 315.04754 * 17 15 10 19 19 C 1.55156 * 110.72519 * 78.19492 * 17 15 10 20 20 C 1.54905 * 101.58526 * 154.04008 * 19 17 15 21 21 N 1.47429 * 104.83331 * 322.99098 * 20 19 17 22 22 C 1.36935 * 125.64889 * 204.09043 * 21 20 19 23 23 H 1.07997 * 119.99778 * 8.80518 * 22 21 20 24 24 C 1.38813 * 120.00084 * 188.79588 * 22 21 20 25 25 N 1.31624 * 119.99547 * 11.26214 * 24 22 21 26 26 Si 1.86792 * 120.00261 * 191.25634 * 24 22 21 27 27 H 1.48505 * 109.47073 * 84.97923 * 26 24 22 28 28 H 1.48491 * 109.47284 * 204.98036 * 26 24 22 29 29 H 1.48504 * 109.47304 * 324.98464 * 26 24 22 30 30 C 1.47024 * 108.70145 * 24.12518 * 21 20 19 31 31 H 1.08995 * 109.47166 * 300.00171 * 1 2 3 32 32 H 1.09005 * 109.46861 * 59.99908 * 1 2 3 33 33 H 1.08997 * 109.47480 * 179.97438 * 1 2 3 34 34 H 1.08995 * 109.47166 * 239.99829 * 2 1 3 35 35 H 1.08996 * 109.47004 * 119.99847 * 2 1 3 36 36 H 1.08007 * 127.33673 * 180.02562 * 6 5 4 37 37 H 1.08998 * 109.58727 * 246.20214 * 11 10 8 38 38 H 1.09005 * 109.58139 * 6.62626 * 11 10 8 39 39 H 1.08998 * 109.49533 * 174.58981 * 12 11 10 40 40 H 1.09000 * 109.50111 * 294.65674 * 12 11 10 41 41 H 1.09004 * 109.45957 * 58.65312 * 13 12 11 42 42 H 1.08995 * 109.46140 * 178.61156 * 13 12 11 43 43 H 1.09004 * 109.39198 * 301.27690 * 14 13 12 44 44 H 1.08997 * 109.62468 * 181.16609 * 14 13 12 45 45 H 1.09004 * 111.00232 * 35.96072 * 19 17 15 46 46 H 1.08998 * 111.00183 * 272.11971 * 19 17 15 47 47 H 1.09003 * 110.36754 * 81.82615 * 20 19 17 48 48 H 1.09000 * 110.36918 * 204.15113 * 20 19 17 49 49 H 0.97008 * 119.99440 * 179.97438 * 25 24 22 50 50 H 1.08996 * 109.88598 * 239.52526 * 30 21 20 51 51 H 1.09008 * 109.88137 * 118.35509 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 2.2961 2.1763 -1.0686 5 7 2.6933 3.2793 -0.7834 6 6 2.7611 3.4622 0.5020 7 6 2.3068 2.1972 1.0994 8 6 2.1825 1.8468 2.5258 9 8 2.0534 0.6840 2.8573 10 7 2.2120 2.8153 3.4625 11 6 2.1993 4.2325 3.0749 12 6 1.0547 4.9350 3.8118 13 6 1.1996 4.6963 5.3166 14 6 1.1148 3.1965 5.6106 15 6 2.2580 2.4741 4.8909 16 1 3.2125 2.7905 5.3117 17 6 2.0980 0.9622 5.0624 18 1 1.2920 0.5872 4.4317 19 6 3.4287 0.2298 4.7462 20 6 3.2808 -1.0617 5.5885 21 7 2.5996 -0.6312 6.8231 22 6 2.6575 -1.2724 8.0317 23 1 3.3484 -2.0897 8.1768 24 6 1.8284 -0.8717 9.0704 25 7 0.8396 -0.0347 8.8376 26 14 2.1157 -1.5206 10.7983 27 1 3.1359 -0.6827 11.4784 28 1 0.8441 -1.4708 11.5635 29 1 2.5958 -2.9241 10.7266 30 6 1.8473 0.6001 6.5416 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 1.8934 -0.5138 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 3.0821 4.3535 1.0208 37 1 3.1480 4.6946 3.3481 38 1 2.0465 4.3155 1.9988 39 1 1.0933 6.0051 3.6078 40 1 0.1009 4.5335 3.4696 41 1 2.1642 5.0762 5.6533 42 1 0.4004 5.2156 5.8453 43 1 0.1594 2.8113 5.2540 44 1 1.1973 3.0288 6.6844 45 1 4.2857 0.8164 5.0774 46 1 3.5037 -0.0029 3.6840 47 1 2.6740 -1.7944 5.0563 48 1 4.2612 -1.4772 5.8214 49 1 0.2600 0.2450 9.5635 50 1 2.2003 1.4057 7.1853 51 1 0.7832 0.4303 6.7064 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039235866.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:38:56 Heat of formation + Delta-G solvation = 69.592465 kcal Electronic energy + Delta-G solvation = -32921.622180 eV Core-core repulsion = 28825.793156 eV Total energy + Delta-G solvation = -4095.829024 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -45.94063 -41.80233 -38.83728 -38.31887 -35.72776 -35.25525 -34.47119 -33.62078 -32.86244 -31.20553 -30.49657 -28.88685 -27.28469 -26.14534 -25.35759 -24.84174 -24.20161 -22.78808 -22.13747 -21.26775 -21.06003 -20.13663 -18.83398 -18.74245 -18.36067 -17.71784 -17.10970 -16.91999 -16.40839 -15.97670 -15.72595 -15.58720 -15.38592 -14.98711 -14.85245 -14.59005 -14.50211 -14.14489 -14.10265 -14.01229 -13.68840 -13.57509 -13.38421 -13.22527 -12.87861 -12.79160 -12.72599 -12.47379 -12.32159 -12.20179 -12.02047 -11.87945 -11.82738 -11.75194 -11.64472 -11.37602 -11.34523 -11.21456 -11.06011 -10.75243 -10.39826 -9.94679 -9.47250 -8.83062 -7.79817 -5.19507 0.07028 0.75946 1.44727 1.47551 1.55600 1.70116 2.00805 2.17566 2.51267 3.19522 3.30207 3.32954 3.51352 3.66943 3.77719 3.84066 3.92823 4.00579 4.09618 4.18324 4.22811 4.27223 4.27451 4.33878 4.41058 4.44861 4.58294 4.63685 4.70720 4.71989 4.82262 4.83000 4.89768 4.94424 4.99281 5.00645 5.07751 5.13488 5.17226 5.21884 5.24786 5.29205 5.33859 5.44238 5.47246 5.52442 5.63574 5.82301 5.90984 6.24759 6.45933 7.11794 7.12619 7.22922 7.80977 8.49067 9.26671 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014754 B = 0.003356 C = 0.002943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1897.272376 B = 8342.195485 C = 9513.047853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.052 4.052 3 C 0.057 3.943 4 O 0.085 5.915 5 N -0.372 5.372 6 C 0.023 3.977 7 C -0.274 4.274 8 C 0.583 3.417 9 O -0.532 6.532 10 N -0.594 5.594 11 C 0.078 3.922 12 C -0.128 4.128 13 C -0.115 4.115 14 C -0.126 4.126 15 C 0.175 3.825 16 H 0.071 0.929 17 C -0.091 4.091 18 H 0.092 0.908 19 C -0.101 4.101 20 C 0.129 3.871 21 N -0.627 5.627 22 C -0.248 4.248 23 H 0.076 0.924 24 C -0.063 4.063 25 N -0.943 5.943 26 Si 0.977 3.023 27 H -0.284 1.284 28 H -0.293 1.293 29 H -0.271 1.271 30 C 0.190 3.810 31 H 0.040 0.960 32 H 0.069 0.931 33 H 0.083 0.917 34 H 0.115 0.885 35 H 0.102 0.898 36 H 0.241 0.759 37 H 0.094 0.906 38 H 0.114 0.886 39 H 0.107 0.893 40 H 0.056 0.944 41 H 0.073 0.927 42 H 0.070 0.930 43 H 0.049 0.951 44 H 0.057 0.943 45 H 0.049 0.951 46 H 0.097 0.903 47 H 0.009 0.991 48 H 0.036 0.964 49 H 0.246 0.754 50 H -0.003 1.003 51 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.675 12.131 -20.235 23.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.090 4.090 3 C -0.007 4.007 4 O 0.028 5.972 5 N -0.080 5.080 6 C -0.159 4.159 7 C -0.282 4.282 8 C 0.372 3.628 9 O -0.412 6.412 10 N -0.326 5.326 11 C -0.043 4.043 12 C -0.166 4.166 13 C -0.152 4.152 14 C -0.165 4.165 15 C 0.072 3.928 16 H 0.088 0.912 17 C -0.110 4.110 18 H 0.110 0.890 19 C -0.139 4.139 20 C 0.004 3.996 21 N -0.353 5.353 22 C -0.377 4.377 23 H 0.094 0.906 24 C -0.257 4.257 25 N -0.591 5.591 26 Si 0.805 3.195 27 H -0.211 1.211 28 H -0.219 1.219 29 H -0.196 1.196 30 C 0.064 3.936 31 H 0.059 0.941 32 H 0.088 0.912 33 H 0.102 0.898 34 H 0.134 0.866 35 H 0.120 0.880 36 H 0.256 0.744 37 H 0.112 0.888 38 H 0.132 0.868 39 H 0.125 0.875 40 H 0.075 0.925 41 H 0.091 0.909 42 H 0.089 0.911 43 H 0.068 0.932 44 H 0.076 0.924 45 H 0.068 0.932 46 H 0.114 0.886 47 H 0.026 0.974 48 H 0.054 0.946 49 H 0.055 0.945 50 H 0.015 0.985 51 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 1.777 12.264 -20.968 24.356 hybrid contribution -0.216 -0.753 2.330 2.458 sum 1.561 11.511 -18.638 21.962 Atomic orbital electron populations 1.21687 0.92504 1.03768 1.01918 1.20502 0.97382 0.84779 1.06373 1.25194 0.94221 0.96391 0.84892 1.84561 1.61433 1.17783 1.33417 1.73679 1.16964 0.99039 1.18292 1.27246 1.00192 0.99593 0.88866 1.22135 1.14981 0.96243 0.94830 1.17107 0.77156 0.84985 0.83503 1.90800 1.49639 1.20300 1.80440 1.47857 1.72479 1.07170 1.05131 1.22740 1.00671 0.78934 1.01948 1.21904 0.98176 1.02074 0.94401 1.21526 1.02928 0.93741 0.97053 1.21910 0.97689 0.96960 0.99933 1.21047 0.98433 0.93786 0.79531 0.91150 1.22733 0.99625 0.93550 0.95135 0.89030 1.22961 0.95697 0.95332 0.99899 1.21702 0.94644 0.96144 0.87110 1.44892 1.56894 1.27094 1.06467 1.19435 1.16296 1.13595 0.88415 0.90634 1.25639 0.96910 1.00952 1.02151 1.70206 1.18882 1.38929 1.31122 0.85124 0.76569 0.78177 0.79650 1.21130 1.21904 1.19605 1.21083 0.94546 0.86471 0.91482 0.94110 0.91175 0.89786 0.86639 0.87983 0.74364 0.88753 0.86831 0.87502 0.92490 0.90860 0.91081 0.93194 0.92431 0.93246 0.88551 0.97351 0.94566 0.94462 0.98515 0.96329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 9.89 71.98 0.71 -1.61 16 2 C -0.05 -0.91 6.20 29.85 0.18 -0.72 16 3 C 0.06 1.15 6.80 25.48 0.17 1.33 16 4 O 0.09 1.71 11.06 76.90 0.85 2.57 16 5 N -0.37 -7.48 12.01 -54.19 -0.65 -8.14 16 6 C 0.02 0.38 10.19 87.29 0.89 1.27 16 7 C -0.27 -5.95 6.11 -18.75 -0.11 -6.06 16 8 C 0.58 15.71 7.32 86.66 0.63 16.34 16 9 O -0.53 -17.66 8.28 -4.06 -0.03 -17.69 16 10 N -0.59 -14.56 2.97 -798.88 -2.38 -16.94 16 11 C 0.08 1.18 5.41 86.36 0.47 1.65 16 12 C -0.13 -1.93 6.08 30.67 0.19 -1.75 16 13 C -0.11 -2.37 5.88 30.63 0.18 -2.19 16 14 C -0.13 -3.87 4.82 30.68 0.15 -3.72 16 15 C 0.18 5.50 2.51 44.97 0.11 5.61 16 16 H 0.07 2.22 7.86 -2.38 -0.02 2.20 16 17 C -0.09 -3.69 1.88 -9.60 -0.02 -3.71 16 18 H 0.09 4.02 5.81 -13.97 -0.08 3.94 16 19 C -0.10 -3.98 5.67 31.98 0.18 -3.80 16 20 C 0.13 6.05 7.23 86.85 0.63 6.68 16 21 N -0.63 -35.10 3.39 -691.96 -2.35 -37.45 16 22 C -0.25 -14.83 10.24 84.03 0.86 -13.97 16 23 H 0.08 4.35 7.85 -2.91 -0.02 4.33 16 24 C -0.06 -3.73 5.41 84.86 0.46 -3.27 16 25 N -0.94 -58.37 10.64 21.65 0.23 -58.14 16 26 Si 0.98 47.29 29.57 68.60 2.03 49.31 16 27 H -0.28 -13.44 7.11 99.48 0.71 -12.74 16 28 H -0.29 -14.09 7.11 99.48 0.71 -13.39 16 29 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 30 C 0.19 9.86 4.12 86.73 0.36 10.21 16 31 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 33 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.12 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.10 2.22 6.63 -2.39 -0.02 2.20 16 36 H 0.24 2.26 5.82 -2.91 -0.02 2.24 16 37 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.11 1.34 3.36 -2.38 -0.01 1.33 16 39 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 42 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 43 H 0.05 1.66 8.14 -2.38 -0.02 1.64 16 44 H 0.06 2.13 6.66 -2.39 -0.02 2.11 16 45 H 0.05 1.88 7.85 -2.39 -0.02 1.86 16 46 H 0.10 3.56 5.62 -2.66 -0.01 3.55 16 47 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 48 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 49 H 0.25 14.73 8.31 -92.70 -0.77 13.95 16 50 H 0.00 -0.18 6.73 -2.39 -0.02 -0.19 16 51 H 0.02 1.11 6.81 -2.38 -0.02 1.10 16 Total: -1.00 -74.46 382.04 4.61 -69.84 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: 0.87 Total: 14.33 kcal Atomic # 6 Polarization: -3.74 SS G_CDS: 6.04 Total: 2.30 kcal Atomic # 7 Polarization: -115.51 SS G_CDS: -5.15 Total: -120.66 kcal Atomic # 8 Polarization: -15.94 SS G_CDS: 0.82 Total: -15.12 kcal Atomic # 14 Polarization: 47.29 SS G_CDS: 2.03 Total: 49.31 kcal Total: -74.46 4.61 -69.84 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039235866.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.437 kcal (2) G-P(sol) polarization free energy of solvation -74.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.844 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds