Wall clock time and date at job start Wed Apr 1 2020 05:39:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50701 * 109.47386 * 2 1 4 4 C 1.35309 * 126.66589 * 90.26204 * 3 2 1 5 5 C 1.42278 * 103.92061 * 180.11110 * 4 3 2 6 6 C 1.48331 * 126.93523 * 179.91133 * 5 4 3 7 7 O 1.21492 * 120.00111 * 6.33348 * 6 5 4 8 8 N 1.34778 * 119.99426 * 186.60964 * 6 5 4 9 9 C 1.46924 * 120.63189 * 7.38743 * 8 6 5 10 10 C 1.53628 * 108.53922 * 126.37260 * 9 8 6 11 11 C 1.53034 * 109.24461 * 54.85629 * 10 9 8 12 12 C 1.53048 * 109.53773 * 298.50671 * 11 10 9 13 13 C 1.46925 * 120.62492 * 187.66932 * 8 6 5 14 14 H 1.09007 * 109.58544 * 113.80024 * 13 8 6 15 15 C 1.52997 * 109.59183 * 353.51263 * 13 8 6 16 16 H 1.09001 * 110.88508 * 50.10044 * 15 13 8 17 17 C 1.55151 * 111.00618 * 286.17760 * 15 13 8 18 18 C 1.54326 * 102.94422 * 206.42105 * 17 15 13 19 19 N 1.47015 * 107.26927 * 22.19054 * 18 17 15 20 20 C 1.36939 * 125.64818 * 181.02373 * 19 18 17 21 21 H 1.08004 * 120.00245 * 180.02562 * 20 19 18 22 22 C 1.38806 * 120.00098 * 0.04370 * 20 19 18 23 23 N 1.31619 * 119.99820 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 120.00245 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.46974 * 90.00029 * 24 22 20 26 26 H 1.48502 * 109.47531 * 209.99883 * 24 22 20 27 27 H 1.48503 * 109.47432 * 330.00270 * 24 22 20 28 28 C 1.47425 * 108.70792 * 1.06134 * 19 18 17 29 29 N 1.30985 * 106.12228 * 359.64992 * 5 4 3 30 30 O 1.20904 * 111.43921 * 0.22430 * 29 5 4 31 31 H 1.09002 * 109.46799 * 300.00093 * 1 2 3 32 32 H 1.09004 * 109.47463 * 59.99339 * 1 2 3 33 33 H 1.08994 * 109.47471 * 180.02562 * 1 2 3 34 34 H 1.09002 * 109.46799 * 239.99907 * 2 1 3 35 35 H 1.08998 * 109.47099 * 120.00396 * 2 1 3 36 36 H 1.08001 * 128.03824 * 0.02562 * 4 3 2 37 37 H 1.08998 * 109.58405 * 246.20094 * 9 8 6 38 38 H 1.08990 * 109.58620 * 6.62881 * 9 8 6 39 39 H 1.09004 * 109.63443 * 294.85890 * 10 9 8 40 40 H 1.09003 * 109.42917 * 174.72831 * 10 9 8 41 41 H 1.09007 * 109.45967 * 178.49437 * 11 10 9 42 42 H 1.08997 * 109.46151 * 58.52989 * 11 10 9 43 43 H 1.08990 * 109.49734 * 301.41732 * 12 11 10 44 44 H 1.08994 * 109.52296 * 181.33070 * 12 11 10 45 45 H 1.09006 * 110.72094 * 324.78451 * 17 15 13 46 46 H 1.09004 * 110.72194 * 88.05681 * 17 15 13 47 47 H 1.08998 * 109.88266 * 262.77374 * 18 17 15 48 48 H 1.08996 * 110.01524 * 141.68053 * 18 17 15 49 49 H 0.97010 * 120.00028 * 180.02562 * 23 22 20 50 50 H 1.08995 * 110.37036 * 217.03165 * 28 19 18 51 51 H 1.08999 * 110.36791 * 94.70683 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3065 2.1809 1.0853 5 6 2.7390 3.4197 0.5353 6 6 3.1663 4.6267 1.2841 7 8 3.2796 4.5832 2.4929 8 7 3.4235 5.7732 0.6239 9 6 3.1321 5.8923 -0.8112 10 6 2.2498 7.1309 -1.0294 11 6 2.9410 8.3553 -0.4251 12 6 3.1195 8.1509 1.0811 13 6 4.0064 6.9257 1.3244 14 1 5.0084 7.1180 0.9407 15 6 4.0792 6.6314 2.8241 16 1 4.5473 5.6643 3.0080 17 6 2.6719 6.7014 3.4735 18 6 2.9856 7.0677 4.9395 19 7 4.3142 7.6971 4.9574 20 6 4.9680 8.1494 6.0724 21 1 5.9455 8.5993 5.9799 22 6 4.3747 8.0293 7.3215 23 7 3.1834 7.4812 7.4342 24 14 5.2669 8.6457 8.8425 25 1 4.9094 10.0666 9.0843 26 1 4.8675 7.8282 10.0161 27 1 6.7332 8.5324 8.6363 28 6 4.8256 7.7614 3.5762 29 7 2.6891 3.2771 -0.7658 30 8 2.2996 2.1751 -1.0750 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3634 -1.0276 0.0005 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5139 0.8899 36 1 2.2163 1.9106 2.1271 37 1 4.0642 6.0020 -1.3655 38 1 2.6046 5.0015 -1.1520 39 1 1.2842 6.9825 -0.5459 40 1 2.1019 7.2870 -2.0980 41 1 2.3303 9.2409 -0.6015 42 1 3.9170 8.4885 -0.8917 43 1 2.1458 7.9929 1.5447 44 1 3.5903 9.0329 1.5151 45 1 2.0681 7.4774 3.0029 46 1 2.1721 5.7345 3.4161 47 1 2.9939 6.1669 5.5531 48 1 2.2393 7.7665 5.3173 49 1 2.7686 7.3976 8.3071 50 1 5.9005 7.5818 3.5609 51 1 4.5955 8.7295 3.1312 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039256660.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:39:02 Heat of formation + Delta-G solvation = 69.783018 kcal Electronic energy + Delta-G solvation = -32250.441049 eV Core-core repulsion = 28154.620288 eV Total energy + Delta-G solvation = -4095.820761 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -46.14069 -41.95720 -39.00325 -38.28403 -35.83531 -35.48640 -34.53019 -33.73490 -32.57730 -31.12780 -30.63022 -29.04935 -27.28376 -26.10751 -25.26563 -25.04877 -24.14059 -23.29355 -22.25470 -21.50572 -21.17951 -19.58841 -18.88431 -18.83633 -18.37110 -17.65715 -17.03168 -16.80339 -16.54965 -16.43687 -15.74542 -15.56921 -15.40607 -15.14019 -14.91814 -14.82524 -14.38294 -14.35995 -14.12306 -13.98371 -13.92553 -13.53469 -13.47715 -13.24215 -12.93717 -12.85455 -12.72341 -12.46171 -12.31997 -12.07170 -12.01836 -11.91975 -11.86567 -11.76949 -11.58357 -11.51681 -11.39944 -11.21693 -11.10303 -10.69913 -10.41938 -10.33545 -9.53901 -8.86831 -7.83664 -5.20340 0.02782 0.66535 1.42029 1.46029 1.54600 1.66127 2.01325 2.03568 2.48963 2.79889 3.31443 3.36957 3.62325 3.72965 3.78124 3.90430 3.97547 3.99619 4.07374 4.13803 4.18910 4.25414 4.30953 4.36027 4.37383 4.45731 4.54723 4.62235 4.68840 4.73639 4.82561 4.87651 4.91373 4.95328 4.97955 5.04808 5.07583 5.14000 5.16052 5.17022 5.21743 5.26517 5.40837 5.44111 5.45615 5.48592 5.66562 5.75212 5.81669 6.19261 6.25449 6.90326 7.09293 7.10636 7.78302 8.45576 9.26813 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012650 B = 0.003051 C = 0.002579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2212.838968 B = 9175.177873 C =10855.254478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.041 4.041 3 C -0.006 4.006 4 C -0.204 4.204 5 C -0.036 4.036 6 C 0.572 3.428 7 O -0.526 6.526 8 N -0.589 5.589 9 C 0.086 3.914 10 C -0.127 4.127 11 C -0.113 4.113 12 C -0.136 4.136 13 C 0.167 3.833 14 H 0.090 0.910 15 C -0.082 4.082 16 H 0.084 0.916 17 C -0.115 4.115 18 C 0.196 3.804 19 N -0.626 5.626 20 C -0.243 4.243 21 H 0.084 0.916 22 C -0.073 4.073 23 N -0.954 5.954 24 Si 0.984 3.016 25 H -0.283 1.283 26 H -0.294 1.294 27 H -0.267 1.267 28 C 0.132 3.868 29 N -0.336 5.336 30 O 0.119 5.881 31 H 0.050 0.950 32 H 0.058 0.942 33 H 0.090 0.910 34 H 0.113 0.887 35 H 0.114 0.886 36 H 0.180 0.820 37 H 0.083 0.917 38 H 0.112 0.888 39 H 0.053 0.947 40 H 0.101 0.899 41 H 0.078 0.922 42 H 0.078 0.922 43 H 0.060 0.940 44 H 0.077 0.923 45 H 0.065 0.935 46 H 0.070 0.930 47 H -0.005 1.005 48 H -0.001 1.001 49 H 0.245 0.755 50 H 0.035 0.965 51 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.776 -12.581 -25.727 29.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.079 4.079 3 C -0.069 4.069 4 C -0.226 4.226 5 C -0.193 4.193 6 C 0.359 3.641 7 O -0.402 6.402 8 N -0.322 5.322 9 C -0.035 4.035 10 C -0.165 4.165 11 C -0.150 4.150 12 C -0.174 4.174 13 C 0.064 3.936 14 H 0.108 0.892 15 C -0.101 4.101 16 H 0.102 0.898 17 C -0.153 4.153 18 C 0.070 3.930 19 N -0.352 5.352 20 C -0.372 4.372 21 H 0.102 0.898 22 C -0.266 4.266 23 N -0.603 5.603 24 Si 0.812 3.188 25 H -0.209 1.209 26 H -0.221 1.221 27 H -0.192 1.192 28 C 0.006 3.994 29 N -0.040 5.040 30 O 0.046 5.954 31 H 0.069 0.931 32 H 0.077 0.923 33 H 0.108 0.892 34 H 0.132 0.868 35 H 0.133 0.867 36 H 0.197 0.803 37 H 0.101 0.899 38 H 0.130 0.870 39 H 0.071 0.929 40 H 0.120 0.880 41 H 0.097 0.903 42 H 0.097 0.903 43 H 0.078 0.922 44 H 0.096 0.904 45 H 0.083 0.917 46 H 0.088 0.912 47 H 0.014 0.986 48 H 0.017 0.983 49 H 0.054 0.946 50 H 0.054 0.946 51 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -4.421 -11.718 -25.881 28.752 hybrid contribution 0.160 0.165 2.370 2.381 sum -4.261 -11.553 -23.512 26.541 Atomic orbital electron populations 1.21820 0.92888 1.03943 1.02298 1.20426 0.96919 0.83650 1.06866 1.25067 0.99917 0.97928 0.83998 1.22610 1.05960 0.91597 1.02472 1.23590 1.07037 0.98043 0.90651 1.17454 0.78425 0.82126 0.86060 1.90895 1.51700 1.83784 1.13859 1.48013 1.61327 1.11571 1.11297 1.22615 1.01101 1.01338 0.78453 1.21975 0.98101 0.93879 1.02591 1.21525 1.01926 0.98260 0.93319 1.22142 1.00094 0.96926 0.98208 1.21177 0.96973 0.84967 0.90492 0.89179 1.22689 0.96624 0.98238 0.92549 0.89773 1.23065 0.96980 1.00274 0.94969 1.20759 0.85919 0.93694 0.92580 1.44776 1.17598 1.70450 1.02378 1.19526 1.00178 1.32043 0.85474 0.89836 1.25769 0.97986 1.02036 1.00773 1.70272 1.16797 1.50684 1.22593 0.84997 0.78099 0.77341 0.78394 1.20949 1.22093 1.19203 1.21885 0.96227 0.96426 0.84859 1.74007 1.15605 0.99649 1.14761 1.84739 1.59430 1.17159 1.34072 0.93105 0.92276 0.89166 0.86842 0.86744 0.80286 0.89870 0.87019 0.92857 0.88019 0.90348 0.90343 0.92157 0.90450 0.91655 0.91209 0.98634 0.98295 0.94591 0.94641 0.94883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.90 71.98 0.71 -0.37 16 2 C -0.04 -0.30 6.50 29.85 0.19 -0.10 16 3 C -0.01 -0.09 6.73 25.01 0.17 0.08 16 4 C -0.20 -4.58 10.93 22.60 0.25 -4.33 16 5 C -0.04 -0.97 6.87 42.96 0.30 -0.67 16 6 C 0.57 18.71 7.43 86.93 0.65 19.35 16 7 O -0.53 -21.37 10.06 -3.69 -0.04 -21.40 16 8 N -0.59 -16.51 2.96 -797.03 -2.36 -18.87 16 9 C 0.09 1.79 6.14 86.51 0.53 2.32 16 10 C -0.13 -2.22 6.10 30.82 0.19 -2.03 16 11 C -0.11 -2.07 5.88 30.62 0.18 -1.89 16 12 C -0.14 -3.57 4.69 30.68 0.14 -3.43 16 13 C 0.17 4.97 2.76 44.98 0.12 5.10 16 14 H 0.09 2.42 8.14 -2.38 -0.02 2.40 16 15 C -0.08 -3.30 2.11 -9.40 -0.02 -3.32 16 16 H 0.08 3.89 5.77 -16.79 -0.10 3.79 16 17 C -0.12 -5.19 5.44 31.78 0.17 -5.02 16 18 C 0.20 11.22 5.38 86.73 0.47 11.69 16 19 N -0.63 -35.95 3.39 -692.01 -2.35 -38.30 16 20 C -0.24 -14.82 10.28 84.03 0.86 -13.96 16 21 H 0.08 4.80 7.83 -2.91 -0.02 4.78 16 22 C -0.07 -4.50 5.49 84.86 0.47 -4.04 16 23 N -0.95 -62.41 10.31 21.65 0.22 -62.18 16 24 Si 0.98 48.76 29.55 68.60 2.03 50.79 16 25 H -0.28 -13.59 7.11 99.48 0.71 -12.88 16 26 H -0.29 -14.61 7.11 99.48 0.71 -13.91 16 27 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 28 C 0.13 5.96 6.63 86.86 0.58 6.54 16 29 N -0.34 -7.71 8.67 -49.51 -0.43 -8.14 16 30 O 0.12 2.21 11.18 71.87 0.80 3.02 16 31 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 33 H 0.09 0.32 8.14 -2.39 -0.02 0.30 16 34 H 0.11 0.38 8.14 -2.39 -0.02 0.36 16 35 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 36 H 0.18 3.95 8.06 -2.91 -0.02 3.92 16 37 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.11 2.38 4.24 -9.02 -0.04 2.34 16 39 H 0.05 1.08 8.14 -2.38 -0.02 1.06 16 40 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.08 1.27 8.14 -2.38 -0.02 1.25 16 42 H 0.08 1.23 8.14 -2.39 -0.02 1.22 16 43 H 0.06 1.82 5.62 -2.39 -0.01 1.81 16 44 H 0.08 2.11 6.69 -2.39 -0.02 2.09 16 45 H 0.07 2.72 5.23 -2.38 -0.01 2.70 16 46 H 0.07 3.26 5.75 -2.38 -0.01 3.24 16 47 H 0.00 -0.30 7.38 -2.39 -0.02 -0.32 16 48 H 0.00 -0.07 7.50 -2.39 -0.02 -0.09 16 49 H 0.24 15.47 8.31 -92.70 -0.77 14.70 16 50 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 51 H 0.03 1.40 6.39 -2.39 -0.02 1.39 16 Total: -1.00 -79.75 383.13 4.66 -75.10 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: 0.83 Total: 14.09 kcal Atomic # 6 Polarization: -0.05 SS G_CDS: 5.95 Total: 5.90 kcal Atomic # 7 Polarization: -122.58 SS G_CDS: -4.92 Total: -127.49 kcal Atomic # 8 Polarization: -19.15 SS G_CDS: 0.77 Total: -18.39 kcal Atomic # 14 Polarization: 48.76 SS G_CDS: 2.03 Total: 50.79 kcal Total: -79.75 4.66 -75.10 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039256660.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.879 kcal (2) G-P(sol) polarization free energy of solvation -79.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.096 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds