Wall clock time and date at job start Wed Apr 1 2020 06:05:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50696 * 109.47024 * 2 1 4 4 N 1.29934 * 125.38451 * 90.30422 * 3 2 1 5 5 C 1.36061 * 108.47944 * 180.11853 * 4 3 2 6 6 C 1.47428 * 126.44623 * 179.86636 * 5 4 3 7 7 O 1.21611 * 119.99379 * 179.68620 * 6 5 4 8 8 N 1.34771 * 120.00090 * 359.68165 * 6 5 4 9 9 C 1.48163 * 127.02795 * 359.97438 * 8 6 5 10 10 C 1.55045 * 103.31543 * 140.99012 * 9 8 6 11 11 C 1.54153 * 102.73182 * 36.98985 * 10 9 8 12 12 C 1.47608 * 127.02869 * 179.97438 * 8 6 5 13 13 C 1.52499 * 110.05966 * 97.48268 * 11 10 9 14 14 C 1.53132 * 109.59929 * 181.75171 * 13 11 10 15 15 C 1.53195 * 109.31895 * 299.46582 * 14 13 11 16 16 N 1.47018 * 108.84940 * 55.05732 * 15 14 13 17 17 C 1.36935 * 120.66310 * 125.97571 * 16 15 14 18 18 H 1.07994 * 120.00038 * 332.06952 * 17 16 15 19 19 C 1.38810 * 119.99585 * 152.08058 * 17 16 15 20 20 N 1.31619 * 120.00374 * 343.20682 * 19 17 16 21 21 Si 1.86801 * 120.00050 * 163.21480 * 19 17 16 22 22 H 1.48499 * 109.47657 * 89.99346 * 21 19 17 23 23 H 1.48500 * 109.47202 * 209.99715 * 21 19 17 24 24 H 1.48505 * 109.46958 * 329.99421 * 21 19 17 25 25 C 1.47033 * 118.64942 * 305.99461 * 16 15 14 26 26 C 1.36092 * 107.10226 * 359.60063 * 5 4 3 27 27 C 1.50702 * 126.52110 * 180.20848 * 26 5 4 28 28 O 1.34054 * 125.37592 * 269.97092 * 3 2 1 29 29 H 1.09006 * 109.47015 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47549 * 300.00333 * 1 2 3 31 31 H 1.09003 * 109.47012 * 60.00288 * 1 2 3 32 32 H 1.08997 * 109.47179 * 239.99277 * 2 1 3 33 33 H 1.09003 * 109.46657 * 119.99301 * 2 1 3 34 34 H 1.08995 * 110.65255 * 259.44836 * 9 8 6 35 35 H 1.09004 * 110.65184 * 22.37183 * 9 8 6 36 36 H 1.08994 * 110.76162 * 278.67277 * 10 9 8 37 37 H 1.09002 * 110.75744 * 155.29855 * 10 9 8 38 38 H 1.09004 * 109.97326 * 85.99256 * 12 8 6 39 39 H 1.09005 * 110.00336 * 324.74178 * 12 8 6 40 40 H 1.08999 * 109.44899 * 61.71438 * 13 11 10 41 41 H 1.08990 * 109.42922 * 301.77402 * 13 11 10 42 42 H 1.09004 * 109.50272 * 59.42692 * 14 13 11 43 43 H 1.09003 * 109.50357 * 179.50737 * 14 13 11 44 44 H 1.09005 * 109.56612 * 174.90798 * 15 14 13 45 45 H 1.08996 * 109.57069 * 295.26464 * 15 14 13 46 46 H 0.97002 * 120.00325 * 180.02562 * 20 19 17 47 47 H 1.09009 * 109.58636 * 293.00871 * 25 16 15 48 48 H 1.09001 * 109.70138 * 172.66345 * 25 16 15 49 49 H 1.09000 * 109.47245 * 90.00401 * 27 26 5 50 50 H 1.09002 * 109.46345 * 209.99800 * 27 26 5 51 51 H 1.08995 * 109.47196 * 329.99557 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2884 2.1283 1.0593 5 6 2.7178 3.3572 0.6637 6 6 3.1130 4.4721 1.5437 7 8 3.4861 5.5244 1.0616 8 7 3.0606 4.3251 2.8824 9 6 2.6328 3.1207 3.6317 10 6 3.6229 3.0713 4.8238 11 6 3.8116 4.5614 5.1706 12 6 3.4177 5.3312 3.9017 13 6 2.9000 4.9481 6.3303 14 6 3.0638 6.4394 6.6373 15 6 4.5179 6.7194 7.0296 16 7 5.4008 6.2317 5.9599 17 6 6.3240 7.0626 5.3833 18 1 6.1454 8.1271 5.3490 19 6 7.4891 6.5364 4.8425 20 7 7.8714 5.3182 5.1622 21 14 8.5147 7.5574 3.6613 22 1 9.5181 8.3404 4.4262 23 1 9.2115 6.6584 2.7065 24 1 7.6296 8.4850 2.9118 25 6 5.2720 4.8341 5.5218 26 6 2.7196 3.3616 -0.6972 27 6 3.1243 4.5064 -1.5899 28 8 2.2915 2.1523 -1.0930 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5137 0.8901 34 1 1.6085 3.2327 3.9871 35 1 2.7281 2.2287 3.0124 36 1 4.5690 2.6220 4.5219 37 1 3.1884 2.5310 5.6648 38 1 2.5613 5.9735 4.1069 39 1 4.2585 5.9318 3.5544 40 1 3.1666 4.3648 7.2116 41 1 1.8638 4.7449 6.0603 42 1 2.8065 7.0232 5.7535 43 1 2.4051 6.7159 7.4606 44 1 4.6605 7.7920 7.1611 45 1 4.7513 6.2015 7.9599 46 1 8.6859 4.9507 4.7846 47 1 5.5845 4.1686 6.3266 48 1 5.8965 4.6649 4.6446 49 1 4.1908 4.4399 -1.8050 50 1 2.5618 4.4564 -2.5222 51 1 2.9130 5.4506 -1.0882 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001040444670.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:05:23 Heat of formation + Delta-G solvation = 7.727502 kcal Electronic energy + Delta-G solvation = -32325.529186 eV Core-core repulsion = 28227.017496 eV Total energy + Delta-G solvation = -4098.511690 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -43.54258 -39.91405 -38.18879 -35.73473 -35.14604 -34.26105 -32.99718 -31.78728 -31.32424 -29.90480 -28.73671 -27.58666 -25.87111 -25.24435 -24.34183 -23.06657 -22.48326 -22.13293 -21.27628 -20.31536 -19.32708 -18.03854 -17.27645 -17.06785 -16.55528 -16.05077 -15.48410 -15.28932 -14.99299 -14.71583 -14.56996 -13.99167 -13.80600 -13.74636 -13.53651 -13.38246 -13.21535 -12.88681 -12.81257 -12.74774 -12.58323 -12.26819 -12.16706 -12.04420 -11.79936 -11.60785 -11.52320 -11.27542 -11.13031 -10.99470 -10.87920 -10.63752 -10.41378 -10.29676 -10.19788 -10.10592 -9.78129 -9.70828 -9.40233 -9.32488 -8.88603 -8.42293 -8.21470 -6.60925 -5.73631 -3.15080 1.05939 1.97092 2.33560 3.20088 3.43425 3.49187 3.50872 3.55365 3.72401 4.47362 4.55716 4.59583 4.73835 4.75359 4.94636 5.10521 5.12327 5.17365 5.32682 5.33671 5.38387 5.39938 5.51327 5.53134 5.56213 5.68563 5.69379 5.71567 5.77766 5.80685 5.85355 5.97313 6.08075 6.10760 6.24531 6.26919 6.33138 6.45228 6.46963 6.50905 6.57881 6.79583 6.83696 6.89974 6.95688 7.05037 7.37109 7.40841 7.68111 7.85985 7.89832 8.41436 8.49984 9.26676 9.90339 10.46919 11.34930 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011919 B = 0.003557 C = 0.003051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2348.562663 B = 7868.993140 C = 9176.518297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.025 4.025 3 C 0.187 3.813 4 N -0.451 5.451 5 C -0.062 4.062 6 C 0.612 3.388 7 O -0.537 6.537 8 N -0.599 5.599 9 C 0.094 3.906 10 C -0.124 4.124 11 C -0.094 4.094 12 C 0.127 3.873 13 C -0.093 4.093 14 C -0.138 4.138 15 C 0.145 3.855 16 N -0.591 5.591 17 C -0.250 4.250 18 H 0.065 0.935 19 C 0.005 3.995 20 N -0.903 5.903 21 Si 0.897 3.103 22 H -0.288 1.288 23 H -0.290 1.290 24 H -0.278 1.278 25 C 0.190 3.810 26 C 0.035 3.965 27 C -0.075 4.075 28 O -0.198 6.198 29 H 0.073 0.927 30 H 0.065 0.935 31 H 0.059 0.941 32 H 0.093 0.907 33 H 0.108 0.892 34 H 0.062 0.938 35 H 0.107 0.893 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.058 0.942 39 H 0.093 0.907 40 H 0.058 0.942 41 H 0.046 0.954 42 H 0.059 0.941 43 H 0.050 0.950 44 H 0.052 0.948 45 H 0.017 0.983 46 H 0.252 0.748 47 H 0.020 0.980 48 H 0.088 0.912 49 H 0.092 0.908 50 H 0.078 0.922 51 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.845 -11.427 -9.108 21.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.063 4.063 3 C -0.021 4.021 4 N -0.181 5.181 5 C -0.182 4.182 6 C 0.400 3.600 7 O -0.415 6.415 8 N -0.331 5.331 9 C -0.029 4.029 10 C -0.163 4.163 11 C -0.096 4.096 12 C 0.006 3.994 13 C -0.131 4.131 14 C -0.177 4.177 15 C 0.018 3.982 16 N -0.314 5.314 17 C -0.379 4.379 18 H 0.082 0.918 19 C -0.194 4.194 20 N -0.547 5.547 21 Si 0.727 3.273 22 H -0.215 1.215 23 H -0.216 1.216 24 H -0.203 1.203 25 C 0.064 3.936 26 C -0.021 4.021 27 C -0.131 4.131 28 O -0.086 6.086 29 H 0.092 0.908 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.111 0.889 33 H 0.126 0.874 34 H 0.080 0.920 35 H 0.124 0.876 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.076 0.924 39 H 0.111 0.889 40 H 0.077 0.923 41 H 0.065 0.935 42 H 0.077 0.923 43 H 0.069 0.931 44 H 0.071 0.929 45 H 0.035 0.965 46 H 0.062 0.938 47 H 0.038 0.962 48 H 0.106 0.894 49 H 0.110 0.890 50 H 0.096 0.904 51 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -15.539 -11.118 -8.898 21.077 hybrid contribution 0.663 0.568 -1.149 1.443 sum -14.876 -10.551 -10.047 20.822 Atomic orbital electron populations 1.21790 0.93049 1.02968 1.03033 1.20086 0.96850 0.83989 1.05351 1.26289 1.00400 0.96959 0.78483 1.70744 1.15444 1.02667 1.29223 1.21517 1.10291 0.94245 0.92164 1.16251 0.78219 0.85124 0.80431 1.90795 1.48735 1.27633 1.74325 1.48616 1.63430 1.16994 1.04028 1.22885 0.97286 0.89315 0.93392 1.22735 0.99539 0.96808 0.97216 1.21839 1.00917 0.93234 0.93656 1.22172 1.00708 0.90337 0.86168 1.21370 0.97445 0.96795 0.97441 1.22085 0.99222 0.95997 1.00442 1.20919 0.88690 0.97643 0.90921 1.44082 1.39615 1.08945 1.38724 1.19135 0.96473 0.90433 1.31896 0.91756 1.24997 0.96319 0.96960 1.01117 1.70014 1.23777 1.16259 1.44666 0.86366 0.80185 0.79586 0.81139 1.21476 1.21623 1.20303 1.20745 0.88377 0.84941 0.99585 1.23700 0.98313 0.85558 0.94533 1.20594 1.02551 0.92528 0.97473 1.84295 1.63955 1.22364 1.37951 0.90849 0.91617 0.92230 0.88876 0.87373 0.91981 0.87556 0.90741 0.90661 0.92387 0.88887 0.92310 0.93530 0.92272 0.93145 0.92938 0.96544 0.93752 0.96173 0.89396 0.88972 0.90365 0.86836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.89 37.16 0.37 -0.51 16 2 C -0.02 -0.17 6.56 -27.88 -0.18 -0.35 16 3 C 0.19 2.18 7.56 -13.08 -0.10 2.08 16 4 N -0.45 -6.47 8.32 -7.65 -0.06 -6.53 16 5 C -0.06 -1.01 6.84 -83.02 -0.57 -1.58 16 6 C 0.61 11.75 7.89 -12.52 -0.10 11.65 16 7 O -0.54 -11.53 15.15 5.27 0.08 -11.45 16 8 N -0.60 -11.11 3.30 -171.10 -0.56 -11.67 16 9 C 0.09 1.45 6.71 -2.05 -0.01 1.43 16 10 C -0.12 -2.00 6.15 -25.05 -0.15 -2.15 16 11 C -0.09 -1.76 0.62 -154.06 -0.09 -1.85 16 12 C 0.13 2.54 5.57 -3.15 -0.02 2.52 16 13 C -0.09 -1.53 4.40 -26.92 -0.12 -1.65 16 14 C -0.14 -2.40 5.87 -26.56 -0.16 -2.55 16 15 C 0.14 3.03 6.50 -3.66 -0.02 3.01 16 16 N -0.59 -14.75 2.76 -172.48 -0.48 -15.23 16 17 C -0.25 -6.94 9.59 -15.06 -0.14 -7.08 16 18 H 0.06 1.77 7.88 -52.49 -0.41 1.36 16 19 C 0.00 0.13 4.92 -17.43 -0.09 0.04 16 20 N -0.90 -26.56 11.19 55.49 0.62 -25.94 16 21 Si 0.90 22.62 29.59 -169.99 -5.03 17.59 16 22 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 23 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 24 H -0.28 -6.98 7.11 56.52 0.40 -6.57 16 25 C 0.19 4.47 3.59 -3.93 -0.01 4.46 16 26 C 0.03 0.49 7.44 -35.08 -0.26 0.23 16 27 C -0.08 -0.86 9.88 36.01 0.36 -0.50 16 28 O -0.20 -2.48 10.73 6.52 0.07 -2.41 16 29 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.11 1.60 5.40 -51.93 -0.28 1.32 16 36 H 0.07 1.30 7.84 -51.93 -0.41 0.89 16 37 H 0.07 1.03 7.83 -51.93 -0.41 0.63 16 38 H 0.06 1.11 6.54 -51.93 -0.34 0.77 16 39 H 0.09 2.25 7.52 -51.93 -0.39 1.86 16 40 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 41 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.06 1.07 6.65 -51.93 -0.35 0.73 16 43 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.05 1.09 7.94 -51.93 -0.41 0.67 16 45 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 46 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 47 H 0.02 0.50 8.14 -51.92 -0.42 0.08 16 48 H 0.09 2.40 6.09 -51.93 -0.32 2.09 16 49 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 50 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 51 H 0.11 1.48 6.48 -51.93 -0.34 1.14 16 LS Contribution 396.67 15.07 5.98 5.98 Total: -1.00 -32.97 396.67 -8.97 -41.94 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -8.28 Total: 0.52 kcal Atomic # 6 Polarization: 8.51 SS G_CDS: -1.31 Total: 7.20 kcal Atomic # 7 Polarization: -58.89 SS G_CDS: -0.48 Total: -59.37 kcal Atomic # 8 Polarization: -14.01 SS G_CDS: 0.15 Total: -13.86 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.03 Total: 17.59 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -32.97 -8.97 -41.94 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040444670.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.668 kcal (2) G-P(sol) polarization free energy of solvation -32.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.941 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds