Wall clock time and date at job start Wed Apr 1 2020 06:05:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50696 * 109.47024 * 2 1 4 4 N 1.29934 * 125.38451 * 90.30422 * 3 2 1 5 5 C 1.36061 * 108.47944 * 180.11853 * 4 3 2 6 6 C 1.47428 * 126.44623 * 179.86636 * 5 4 3 7 7 O 1.21611 * 119.99379 * 179.68620 * 6 5 4 8 8 N 1.34771 * 120.00090 * 359.68165 * 6 5 4 9 9 C 1.48163 * 127.02795 * 359.97438 * 8 6 5 10 10 C 1.55045 * 103.31543 * 140.99012 * 9 8 6 11 11 C 1.54153 * 102.73182 * 36.98985 * 10 9 8 12 12 C 1.47608 * 127.02869 * 179.97438 * 8 6 5 13 13 C 1.52499 * 110.05966 * 97.48268 * 11 10 9 14 14 C 1.53132 * 109.59929 * 181.75171 * 13 11 10 15 15 C 1.53195 * 109.31895 * 299.46582 * 14 13 11 16 16 N 1.47018 * 108.84940 * 55.05732 * 15 14 13 17 17 C 1.36935 * 120.66310 * 125.97571 * 16 15 14 18 18 H 1.07994 * 120.00038 * 332.06952 * 17 16 15 19 19 C 1.38810 * 119.99585 * 152.08058 * 17 16 15 20 20 N 1.31619 * 120.00374 * 343.20682 * 19 17 16 21 21 Si 1.86801 * 120.00050 * 163.21480 * 19 17 16 22 22 H 1.48499 * 109.47657 * 89.99346 * 21 19 17 23 23 H 1.48500 * 109.47202 * 209.99715 * 21 19 17 24 24 H 1.48505 * 109.46958 * 329.99421 * 21 19 17 25 25 C 1.47033 * 118.64942 * 305.99461 * 16 15 14 26 26 C 1.36092 * 107.10226 * 359.60063 * 5 4 3 27 27 C 1.50702 * 126.52110 * 180.20848 * 26 5 4 28 28 O 1.34054 * 125.37592 * 269.97092 * 3 2 1 29 29 H 1.09006 * 109.47015 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47549 * 300.00333 * 1 2 3 31 31 H 1.09003 * 109.47012 * 60.00288 * 1 2 3 32 32 H 1.08997 * 109.47179 * 239.99277 * 2 1 3 33 33 H 1.09003 * 109.46657 * 119.99301 * 2 1 3 34 34 H 1.08995 * 110.65255 * 259.44836 * 9 8 6 35 35 H 1.09004 * 110.65184 * 22.37183 * 9 8 6 36 36 H 1.08994 * 110.76162 * 278.67277 * 10 9 8 37 37 H 1.09002 * 110.75744 * 155.29855 * 10 9 8 38 38 H 1.09004 * 109.97326 * 85.99256 * 12 8 6 39 39 H 1.09005 * 110.00336 * 324.74178 * 12 8 6 40 40 H 1.08999 * 109.44899 * 61.71438 * 13 11 10 41 41 H 1.08990 * 109.42922 * 301.77402 * 13 11 10 42 42 H 1.09004 * 109.50272 * 59.42692 * 14 13 11 43 43 H 1.09003 * 109.50357 * 179.50737 * 14 13 11 44 44 H 1.09005 * 109.56612 * 174.90798 * 15 14 13 45 45 H 1.08996 * 109.57069 * 295.26464 * 15 14 13 46 46 H 0.97002 * 120.00325 * 180.02562 * 20 19 17 47 47 H 1.09009 * 109.58636 * 293.00871 * 25 16 15 48 48 H 1.09001 * 109.70138 * 172.66345 * 25 16 15 49 49 H 1.09000 * 109.47245 * 90.00401 * 27 26 5 50 50 H 1.09002 * 109.46345 * 209.99800 * 27 26 5 51 51 H 1.08995 * 109.47196 * 329.99557 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2884 2.1283 1.0593 5 6 2.7178 3.3572 0.6637 6 6 3.1130 4.4721 1.5437 7 8 3.4861 5.5244 1.0616 8 7 3.0606 4.3251 2.8824 9 6 2.6328 3.1207 3.6317 10 6 3.6229 3.0713 4.8238 11 6 3.8116 4.5614 5.1706 12 6 3.4177 5.3312 3.9017 13 6 2.9000 4.9481 6.3303 14 6 3.0638 6.4394 6.6373 15 6 4.5179 6.7194 7.0296 16 7 5.4008 6.2317 5.9599 17 6 6.3240 7.0626 5.3833 18 1 6.1454 8.1271 5.3490 19 6 7.4891 6.5364 4.8425 20 7 7.8714 5.3182 5.1622 21 14 8.5147 7.5574 3.6613 22 1 9.5181 8.3404 4.4262 23 1 9.2115 6.6584 2.7065 24 1 7.6296 8.4850 2.9118 25 6 5.2720 4.8341 5.5218 26 6 2.7196 3.3616 -0.6972 27 6 3.1243 4.5064 -1.5899 28 8 2.2915 2.1523 -1.0930 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5137 0.8901 34 1 1.6085 3.2327 3.9871 35 1 2.7281 2.2287 3.0124 36 1 4.5690 2.6220 4.5219 37 1 3.1884 2.5310 5.6648 38 1 2.5613 5.9735 4.1069 39 1 4.2585 5.9318 3.5544 40 1 3.1666 4.3648 7.2116 41 1 1.8638 4.7449 6.0603 42 1 2.8065 7.0232 5.7535 43 1 2.4051 6.7159 7.4606 44 1 4.6605 7.7920 7.1611 45 1 4.7513 6.2015 7.9599 46 1 8.6859 4.9507 4.7846 47 1 5.5845 4.1686 6.3266 48 1 5.8965 4.6649 4.6446 49 1 4.1908 4.4399 -1.8050 50 1 2.5618 4.4564 -2.5222 51 1 2.9130 5.4506 -1.0882 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001040444670.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:05:22 Heat of formation + Delta-G solvation = -13.410429 kcal Electronic energy + Delta-G solvation = -32326.445796 eV Core-core repulsion = 28227.017496 eV Total energy + Delta-G solvation = -4099.428300 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -44.56673 -41.41111 -39.73026 -37.35988 -36.14617 -35.08978 -34.83062 -33.00857 -32.59095 -31.76154 -30.20026 -28.75216 -27.36915 -26.97210 -25.35677 -24.32243 -23.90602 -23.59140 -22.28350 -21.94523 -20.51632 -19.68554 -18.56596 -18.53574 -18.11564 -17.26745 -16.85394 -16.80447 -16.54746 -15.82884 -15.68964 -15.41090 -15.35358 -15.19829 -14.88188 -14.53428 -14.48436 -14.36577 -14.19278 -13.82052 -13.75534 -13.51659 -13.39006 -13.18572 -13.11770 -12.88733 -12.83750 -12.59757 -12.59398 -12.42129 -12.36417 -12.23134 -12.02943 -11.90231 -11.86397 -11.70332 -11.43086 -11.14381 -11.04520 -10.91429 -10.55853 -10.02568 -9.63014 -8.66486 -7.90256 -5.32842 -0.05184 0.90259 1.36581 1.37018 1.41032 1.49442 1.86229 2.13444 2.46512 2.76608 3.24449 3.40023 3.52764 3.64126 3.76606 3.85171 3.97040 4.04294 4.20193 4.25913 4.28200 4.30174 4.34994 4.38400 4.46471 4.48374 4.52383 4.60662 4.72615 4.79407 4.81930 4.90185 4.94718 4.97602 4.98659 5.01181 5.06881 5.08597 5.11682 5.14458 5.18164 5.29270 5.35728 5.36946 5.45450 5.49342 5.57524 5.66491 5.75131 6.33709 6.37122 6.50743 6.96413 7.13688 7.86620 8.36580 9.15256 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011919 B = 0.003557 C = 0.003051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2348.562663 B = 7868.993140 C = 9176.518297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.025 4.025 3 C 0.201 3.799 4 N -0.471 5.471 5 C -0.095 4.095 6 C 0.602 3.398 7 O -0.575 6.575 8 N -0.606 5.606 9 C 0.102 3.898 10 C -0.117 4.117 11 C -0.086 4.086 12 C 0.138 3.862 13 C -0.087 4.087 14 C -0.129 4.129 15 C 0.138 3.862 16 N -0.609 5.609 17 C -0.254 4.254 18 H 0.061 0.939 19 C -0.047 4.047 20 N -0.930 5.930 21 Si 0.951 3.049 22 H -0.277 1.277 23 H -0.296 1.296 24 H -0.278 1.278 25 C 0.203 3.797 26 C 0.042 3.958 27 C -0.074 4.074 28 O -0.193 6.193 29 H 0.099 0.901 30 H 0.052 0.948 31 H 0.055 0.945 32 H 0.118 0.882 33 H 0.121 0.879 34 H 0.088 0.912 35 H 0.113 0.887 36 H 0.051 0.949 37 H 0.111 0.889 38 H 0.068 0.932 39 H 0.037 0.963 40 H 0.071 0.929 41 H 0.081 0.919 42 H 0.048 0.952 43 H 0.088 0.912 44 H 0.048 0.952 45 H 0.019 0.981 46 H 0.247 0.753 47 H 0.000 1.000 48 H 0.041 0.959 49 H 0.097 0.903 50 H 0.112 0.888 51 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.739 -13.368 -9.363 24.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.063 4.063 3 C -0.008 4.008 4 N -0.201 5.201 5 C -0.214 4.214 6 C 0.392 3.608 7 O -0.456 6.456 8 N -0.337 5.337 9 C -0.020 4.020 10 C -0.155 4.155 11 C -0.089 4.089 12 C 0.015 3.985 13 C -0.125 4.125 14 C -0.167 4.167 15 C 0.013 3.987 16 N -0.332 5.332 17 C -0.384 4.384 18 H 0.079 0.921 19 C -0.242 4.242 20 N -0.577 5.577 21 Si 0.780 3.220 22 H -0.204 1.204 23 H -0.222 1.222 24 H -0.204 1.204 25 C 0.077 3.923 26 C -0.015 4.015 27 C -0.130 4.130 28 O -0.081 6.081 29 H 0.117 0.883 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.136 0.864 33 H 0.139 0.861 34 H 0.106 0.894 35 H 0.131 0.869 36 H 0.070 0.930 37 H 0.130 0.870 38 H 0.086 0.914 39 H 0.056 0.944 40 H 0.089 0.911 41 H 0.099 0.901 42 H 0.067 0.933 43 H 0.106 0.894 44 H 0.067 0.933 45 H 0.037 0.963 46 H 0.056 0.944 47 H 0.018 0.982 48 H 0.059 0.941 49 H 0.115 0.885 50 H 0.130 0.870 51 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -18.463 -13.064 -9.113 24.384 hybrid contribution 1.537 1.143 -1.082 2.200 sum -16.926 -11.921 -10.195 23.077 Atomic orbital electron populations 1.21780 0.91964 1.04418 1.02245 1.20461 0.97549 0.81053 1.07197 1.27373 0.97938 0.97972 0.77545 1.70662 1.16869 1.02142 1.30386 1.21212 1.12933 0.94569 0.92643 1.16754 0.77622 0.85598 0.80870 1.90755 1.50440 1.29341 1.75062 1.48765 1.63285 1.17669 1.03981 1.23018 0.98081 0.88278 0.92581 1.22725 0.99129 0.94891 0.98799 1.21659 0.97938 0.95068 0.94185 1.21902 0.98931 0.90617 0.87005 1.21375 0.98510 0.96105 0.96481 1.21977 0.96752 0.96704 1.01307 1.21117 0.90395 0.97339 0.89851 1.44330 1.39797 1.09092 1.40024 1.19393 0.96816 0.90787 1.31445 0.92146 1.25628 0.97699 0.98056 1.02853 1.70148 1.24056 1.17569 1.45880 0.85508 0.78928 0.78226 0.79322 1.20358 1.22203 1.20384 1.20435 0.91057 0.84089 0.96698 1.24024 0.96969 0.86384 0.94139 1.20645 1.03352 0.90764 0.98261 1.84341 1.63818 1.21793 1.38153 0.88276 0.92883 0.92549 0.86387 0.86118 0.89382 0.86936 0.92993 0.87043 0.91368 0.94383 0.91083 0.90063 0.93308 0.89393 0.93321 0.96307 0.94383 0.98178 0.94082 0.88452 0.86965 0.88807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.89 71.98 0.71 -0.52 16 2 C -0.02 -0.26 6.56 29.85 0.20 -0.06 16 3 C 0.20 4.26 7.56 88.39 0.67 4.93 16 4 N -0.47 -12.98 8.32 -293.03 -2.44 -15.42 16 5 C -0.10 -3.11 6.84 40.41 0.28 -2.84 16 6 C 0.60 23.98 7.89 86.66 0.68 24.66 16 7 O -0.57 -26.20 15.15 -4.07 -0.06 -26.26 16 8 N -0.61 -22.83 3.30 -813.50 -2.68 -25.51 16 9 C 0.10 2.97 6.71 86.76 0.58 3.55 16 10 C -0.12 -3.61 6.15 31.68 0.19 -3.41 16 11 C -0.09 -3.19 0.62 -51.89 -0.03 -3.23 16 12 C 0.14 5.62 5.57 86.35 0.48 6.10 16 13 C -0.09 -2.61 4.40 30.47 0.13 -2.47 16 14 C -0.13 -4.16 5.87 30.70 0.18 -3.98 16 15 C 0.14 5.75 6.50 86.35 0.56 6.31 16 16 N -0.61 -31.40 2.76 -699.61 -1.93 -33.33 16 17 C -0.25 -14.69 9.59 84.03 0.81 -13.88 16 18 H 0.06 3.46 7.88 -2.91 -0.02 3.43 16 19 C -0.05 -2.78 4.92 84.86 0.42 -2.36 16 20 N -0.93 -57.46 11.19 21.65 0.24 -57.22 16 21 Si 0.95 48.48 29.59 68.60 2.03 50.51 16 22 H -0.28 -13.54 7.11 99.48 0.71 -12.83 16 23 H -0.30 -15.19 7.11 99.48 0.71 -14.48 16 24 H -0.28 -14.05 7.11 99.48 0.71 -13.34 16 25 C 0.20 9.98 3.59 86.16 0.31 10.29 16 26 C 0.04 1.15 7.44 25.19 0.19 1.34 16 27 C -0.07 -1.67 9.88 71.24 0.70 -0.97 16 28 O -0.19 -4.48 10.73 0.41 0.00 -4.48 16 29 H 0.10 0.37 8.14 -2.38 -0.02 0.35 16 30 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.06 0.52 8.14 -2.39 -0.02 0.51 16 32 H 0.12 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 35 H 0.11 3.22 5.40 -2.39 -0.01 3.20 16 36 H 0.05 1.84 7.84 -2.39 -0.02 1.82 16 37 H 0.11 2.66 7.83 -2.39 -0.02 2.64 16 38 H 0.07 2.60 6.54 -2.38 -0.02 2.59 16 39 H 0.04 1.96 7.52 -2.38 -0.02 1.94 16 40 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 41 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 42 H 0.05 1.69 6.65 -2.38 -0.02 1.68 16 43 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 44 H 0.05 2.02 7.94 -2.38 -0.02 2.00 16 45 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 46 H 0.25 14.90 8.31 -92.71 -0.77 14.13 16 47 H 0.00 0.01 8.14 -2.38 -0.02 -0.01 16 48 H 0.04 2.39 6.09 -2.39 -0.01 2.38 16 49 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 50 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 51 H 0.09 2.54 6.48 -2.39 -0.02 2.53 16 Total: -1.00 -77.76 396.67 3.15 -74.61 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: 0.93 Total: 13.63 kcal Atomic # 6 Polarization: 16.41 SS G_CDS: 7.06 Total: 23.47 kcal Atomic # 7 Polarization: -124.67 SS G_CDS: -6.81 Total: -131.48 kcal Atomic # 8 Polarization: -30.68 SS G_CDS: -0.06 Total: -30.74 kcal Atomic # 14 Polarization: 48.48 SS G_CDS: 2.03 Total: 50.51 kcal Total: -77.76 3.15 -74.61 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040444670.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.200 kcal (2) G-P(sol) polarization free energy of solvation -77.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds