Wall clock time and date at job start Wed Apr 1 2020 05:43:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50698 * 109.47108 * 2 1 4 4 N 1.30016 * 127.33422 * 269.95736 * 3 2 1 5 5 O 1.20656 * 112.30104 * 180.02562 * 4 3 2 6 6 C 1.33484 * 113.15999 * 359.71484 * 5 4 3 7 7 C 1.50698 * 126.83432 * 180.30633 * 6 5 4 8 8 C 1.37363 * 106.34133 * 0.45475 * 6 5 4 9 9 C 1.47395 * 128.56746 * 179.85671 * 8 6 5 10 10 O 1.21610 * 120.00056 * 269.67521 * 9 8 6 11 11 N 1.34779 * 120.00407 * 89.67446 * 9 8 6 12 12 C 1.47494 * 125.65760 * 0.02562 * 11 9 8 13 13 C 1.55026 * 104.90195 * 203.99123 * 12 11 9 14 14 C 1.54782 * 101.63851 * 323.76279 * 13 12 11 15 15 C 1.47186 * 125.66503 * 180.02562 * 11 9 8 16 16 C 1.52241 * 110.25949 * 276.10377 * 14 13 12 17 17 C 1.53164 * 109.65190 * 177.81485 * 16 14 13 18 18 C 1.53197 * 109.27545 * 60.17170 * 17 16 14 19 19 N 1.46931 * 108.92546 * 304.77697 * 18 17 16 20 20 C 1.36930 * 120.70497 * 234.13630 * 19 18 17 21 21 H 1.08000 * 120.00126 * 27.25690 * 20 19 18 22 22 C 1.38813 * 120.00308 * 207.25315 * 20 19 18 23 23 N 1.31620 * 120.00047 * 17.20737 * 22 20 19 24 24 Si 1.86807 * 120.00057 * 197.21080 * 22 20 19 25 25 H 1.48496 * 109.47120 * 89.99995 * 24 22 20 26 26 H 1.48504 * 109.46834 * 209.99802 * 24 22 20 27 27 H 1.48493 * 109.46878 * 329.99741 * 24 22 20 28 28 C 1.47087 * 118.59053 * 54.16497 * 19 18 17 29 29 H 1.08998 * 109.47314 * 299.99730 * 1 2 3 30 30 H 1.08997 * 109.47292 * 60.00128 * 1 2 3 31 31 H 1.08999 * 109.46912 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47176 * 239.99522 * 2 1 3 33 33 H 1.09002 * 109.46893 * 119.99662 * 2 1 3 34 34 H 1.08990 * 109.47717 * 270.17364 * 7 6 5 35 35 H 1.09001 * 109.47025 * 30.17568 * 7 6 5 36 36 H 1.09003 * 109.47557 * 150.16999 * 7 6 5 37 37 H 1.08996 * 110.35381 * 322.84985 * 12 11 9 38 38 H 1.08996 * 110.34965 * 85.03089 * 12 11 9 39 39 H 1.09004 * 111.01335 * 81.72239 * 13 12 11 40 40 H 1.09006 * 111.01476 * 205.59525 * 13 12 11 41 41 H 1.08996 * 109.90858 * 297.85224 * 15 11 9 42 42 H 1.08998 * 109.91071 * 58.93640 * 15 11 9 43 43 H 1.08995 * 109.43718 * 297.86950 * 16 14 13 44 44 H 1.08996 * 109.43988 * 57.79750 * 16 14 13 45 45 H 1.08995 * 109.50603 * 180.10952 * 17 16 14 46 46 H 1.09001 * 109.50371 * 300.23216 * 17 16 14 47 47 H 1.08991 * 109.56191 * 64.61530 * 18 17 16 48 48 H 1.08997 * 109.56172 * 184.94821 * 18 17 16 49 49 H 0.96995 * 119.99888 * 180.02562 * 23 22 20 50 50 H 1.09001 * 109.57718 * 187.73182 * 28 19 18 51 51 H 1.08998 * 109.57710 * 67.34179 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2958 2.1639 -1.0338 5 8 2.6845 3.2625 -0.7208 6 6 2.7411 3.4426 0.6006 7 6 3.1741 4.6915 1.3244 8 6 2.3295 2.2621 1.1696 9 6 2.2090 1.9239 2.5991 10 8 3.1522 1.4330 3.1894 11 7 1.0537 2.1586 3.2522 12 6 -0.1637 2.7460 2.6619 13 6 -0.9294 3.3642 3.8598 14 6 -0.6333 2.3398 4.9817 15 6 0.7973 1.8715 4.6729 16 6 -1.6105 1.1751 4.9034 17 6 -1.2712 0.1445 5.9845 18 6 -1.3776 0.8041 7.3631 19 7 -0.5161 1.9941 7.3898 20 6 0.4317 2.1493 8.3657 21 1 0.8669 1.2814 8.8388 22 6 0.8334 3.4221 8.7471 23 7 0.0931 4.4658 8.4388 24 14 2.4248 3.6538 9.6976 25 1 3.5457 3.8555 8.7447 26 1 2.3056 4.8421 10.5803 27 1 2.6880 2.4481 10.5235 28 6 -0.6940 3.0153 6.3463 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 4.2490 4.6551 1.5009 35 1 2.9349 5.5646 0.7174 36 1 2.6513 4.7582 2.2786 37 1 0.1000 3.5194 1.9406 38 1 -0.7647 1.9722 2.1844 39 1 -0.5296 4.3457 4.1146 40 1 -1.9982 3.4208 3.6533 41 1 0.8850 0.8007 4.8568 42 1 1.5083 2.4144 5.2955 43 1 -2.6252 1.5419 5.0575 44 1 -1.5390 0.7070 3.9216 45 1 -1.9709 -0.6891 5.9250 46 1 -0.2554 -0.2207 5.8332 47 1 -2.4108 1.0973 7.5487 48 1 -1.0527 0.1011 8.1301 49 1 0.3740 5.3553 8.7050 50 1 0.1009 3.7574 6.4223 51 1 -1.6621 3.5003 6.4711 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001040521581.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:43:57 Heat of formation + Delta-G solvation = 22.287720 kcal Electronic energy + Delta-G solvation = -32803.837816 eV Core-core repulsion = 28705.957504 eV Total energy + Delta-G solvation = -4097.880312 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -45.97517 -41.54667 -39.77595 -37.35354 -36.38564 -34.92673 -34.59771 -33.02820 -32.34928 -31.75922 -30.32911 -29.19879 -27.66768 -27.14828 -25.68364 -24.93404 -23.95137 -23.77205 -22.04318 -21.32667 -20.45228 -19.72409 -18.93912 -18.61118 -18.50558 -17.65206 -17.09794 -16.78095 -16.63445 -15.82089 -15.70911 -15.36366 -15.26007 -15.13165 -14.88800 -14.59061 -14.37180 -14.35579 -14.20768 -13.96367 -13.75028 -13.68075 -13.54171 -13.36070 -13.08415 -12.89074 -12.85415 -12.64237 -12.53353 -12.49995 -12.23981 -12.19041 -11.97783 -11.87747 -11.83492 -11.45854 -11.34100 -11.06213 -11.03397 -10.98246 -10.53171 -10.45686 -9.78173 -8.64527 -7.87407 -5.29162 0.21417 0.78921 1.21177 1.42356 1.46233 1.52107 1.64041 2.07828 2.49744 2.94054 3.17608 3.25409 3.38170 3.58312 3.73044 3.81176 3.88462 3.95048 4.07191 4.19609 4.23719 4.24549 4.29182 4.32633 4.37422 4.47192 4.49691 4.58036 4.62321 4.67263 4.72096 4.82047 4.88076 4.93108 4.95348 4.98676 4.99537 5.04312 5.08833 5.13833 5.16357 5.21234 5.28581 5.34252 5.38279 5.49403 5.59340 5.67944 5.77790 6.36052 6.40483 6.89932 7.11760 7.17256 7.89143 8.38947 9.18294 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012904 B = 0.003671 C = 0.003216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2169.268352 B = 7625.175807 C = 8704.402916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.051 4.051 3 C 0.061 3.939 4 N -0.368 5.368 5 O 0.096 5.904 6 C 0.034 3.966 7 C -0.081 4.081 8 C -0.266 4.266 9 C 0.611 3.389 10 O -0.578 6.578 11 N -0.598 5.598 12 C 0.105 3.895 13 C -0.115 4.115 14 C -0.081 4.081 15 C 0.142 3.858 16 C -0.088 4.088 17 C -0.129 4.129 18 C 0.139 3.861 19 N -0.610 5.610 20 C -0.257 4.257 21 H 0.059 0.941 22 C -0.041 4.041 23 N -0.927 5.927 24 Si 0.949 3.051 25 H -0.293 1.293 26 H -0.291 1.291 27 H -0.272 1.272 28 C 0.200 3.800 29 H 0.055 0.945 30 H 0.062 0.938 31 H 0.085 0.915 32 H 0.099 0.901 33 H 0.078 0.922 34 H 0.104 0.896 35 H 0.123 0.877 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.092 0.908 39 H 0.068 0.932 40 H 0.112 0.888 41 H 0.058 0.942 42 H 0.031 0.969 43 H 0.073 0.927 44 H 0.076 0.924 45 H 0.084 0.916 46 H 0.046 0.954 47 H 0.020 0.980 48 H 0.045 0.955 49 H 0.249 0.751 50 H 0.051 0.949 51 H 0.007 0.993 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.323 -2.915 -19.807 20.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.089 4.089 3 C -0.101 4.101 4 N -0.076 5.076 5 O 0.037 5.963 6 C -0.030 4.030 7 C -0.138 4.138 8 C -0.273 4.273 9 C 0.399 3.601 10 O -0.458 6.458 11 N -0.330 5.330 12 C -0.016 4.016 13 C -0.153 4.153 14 C -0.084 4.084 15 C 0.020 3.980 16 C -0.125 4.125 17 C -0.168 4.168 18 C 0.014 3.986 19 N -0.333 5.333 20 C -0.387 4.387 21 H 0.076 0.924 22 C -0.236 4.236 23 N -0.574 5.574 24 Si 0.779 3.221 25 H -0.220 1.220 26 H -0.217 1.217 27 H -0.197 1.197 28 C 0.074 3.926 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.104 0.896 32 H 0.117 0.883 33 H 0.096 0.904 34 H 0.122 0.878 35 H 0.142 0.858 36 H 0.104 0.896 37 H 0.104 0.896 38 H 0.110 0.890 39 H 0.087 0.913 40 H 0.130 0.870 41 H 0.076 0.924 42 H 0.049 0.951 43 H 0.091 0.909 44 H 0.094 0.906 45 H 0.103 0.897 46 H 0.064 0.936 47 H 0.038 0.962 48 H 0.063 0.937 49 H 0.059 0.941 50 H 0.070 0.930 51 H 0.025 0.975 Dipole moment (debyes) X Y Z Total from point charges -2.804 -3.198 -20.770 21.201 hybrid contribution 1.235 0.249 2.007 2.370 sum -1.568 -2.949 -18.763 19.058 Atomic orbital electron populations 1.21738 0.91867 1.03846 1.02429 1.20129 0.98111 0.86307 1.04344 1.25038 0.99782 0.99428 0.85874 1.73577 1.17512 0.92984 1.23494 1.84510 1.62781 1.26471 1.22578 1.25050 0.96883 0.97687 0.83390 1.20664 1.03648 0.90396 0.99120 1.21692 1.15136 0.96551 0.93966 1.16750 0.81156 0.77723 0.84467 1.90812 1.39468 1.46309 1.69220 1.48623 1.12490 1.60581 1.11269 1.22587 0.84518 0.98162 0.96328 1.22821 1.02177 0.97801 0.92533 1.21667 0.92748 0.97102 0.96859 1.21715 0.96980 0.99721 0.79604 1.21277 0.98131 0.94362 0.98764 1.21986 1.00986 0.98269 0.95565 1.21066 0.92856 0.88571 0.96095 1.44319 1.39414 1.21083 1.28471 1.19408 1.13666 0.91618 1.14016 0.92359 1.25529 1.01242 0.96279 1.00595 1.70129 1.37449 0.98280 1.51521 0.85532 0.80923 0.77315 0.78364 1.22016 1.21708 1.19694 1.20405 0.98171 0.90037 0.83953 0.92562 0.91865 0.89581 0.88307 0.90352 0.87758 0.85832 0.89554 0.89592 0.88976 0.91338 0.86971 0.92412 0.95070 0.90853 0.90551 0.89727 0.93570 0.96217 0.93657 0.94141 0.93032 0.97486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.12 9.89 71.98 0.71 -1.41 16 2 C -0.05 -0.99 6.55 29.85 0.20 -0.79 16 3 C 0.06 1.49 6.84 45.16 0.31 1.80 16 4 N -0.37 -9.06 12.01 -44.78 -0.54 -9.60 16 5 O 0.10 2.18 11.06 77.07 0.85 3.03 16 6 C 0.03 0.74 7.55 25.48 0.19 0.93 16 7 C -0.08 -1.28 10.33 71.24 0.74 -0.55 16 8 C -0.27 -7.13 5.14 -18.74 -0.10 -7.23 16 9 C 0.61 20.28 7.63 86.65 0.66 20.94 16 10 O -0.58 -24.65 17.44 -4.06 -0.07 -24.72 16 11 N -0.60 -18.07 3.33 -816.18 -2.72 -20.79 16 12 C 0.11 2.29 6.37 86.88 0.55 2.85 16 13 C -0.11 -2.82 6.00 31.90 0.19 -2.63 16 14 C -0.08 -2.64 0.54 -51.80 -0.03 -2.67 16 15 C 0.14 5.19 5.76 86.47 0.50 5.69 16 16 C -0.09 -2.37 4.59 30.40 0.14 -2.23 16 17 C -0.13 -3.95 5.90 30.72 0.18 -3.77 16 18 C 0.14 5.48 6.49 86.36 0.56 6.05 16 19 N -0.61 -29.37 2.88 -700.24 -2.02 -31.38 16 20 C -0.26 -14.04 9.60 84.03 0.81 -13.24 16 21 H 0.06 3.20 7.89 -2.91 -0.02 3.18 16 22 C -0.04 -2.25 4.92 84.86 0.42 -1.83 16 23 N -0.93 -53.38 11.17 21.65 0.24 -53.14 16 24 Si 0.95 45.61 29.59 68.60 2.03 47.64 16 25 H -0.29 -14.24 7.11 99.48 0.71 -13.53 16 26 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 27 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 28 C 0.20 8.86 3.87 86.06 0.33 9.19 16 29 H 0.06 0.90 6.60 -2.39 -0.02 0.89 16 30 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.08 1.68 8.14 -2.39 -0.02 1.67 16 34 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.09 1.57 8.11 -2.39 -0.02 1.55 16 37 H 0.09 1.61 7.69 -2.39 -0.02 1.59 16 38 H 0.09 1.63 6.26 -2.39 -0.01 1.61 16 39 H 0.07 1.86 8.02 -2.38 -0.02 1.84 16 40 H 0.11 2.13 8.01 -2.38 -0.02 2.11 16 41 H 0.06 2.24 6.01 -2.39 -0.01 2.22 16 42 H 0.03 1.42 7.66 -2.39 -0.02 1.41 16 43 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 44 H 0.08 1.68 7.54 -2.39 -0.02 1.66 16 45 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 46 H 0.05 1.55 6.34 -2.39 -0.02 1.54 16 47 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 48 H 0.04 1.81 7.93 -2.39 -0.02 1.79 16 49 H 0.25 13.98 8.31 -92.71 -0.77 13.21 16 50 H 0.05 2.68 5.87 -2.39 -0.01 2.67 16 51 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 Total: -1.00 -71.54 400.44 5.07 -66.47 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: 0.93 Total: 11.39 kcal Atomic # 6 Polarization: 4.73 SS G_CDS: 6.36 Total: 11.10 kcal Atomic # 7 Polarization: -109.88 SS G_CDS: -5.03 Total: -114.91 kcal Atomic # 8 Polarization: -22.47 SS G_CDS: 0.78 Total: -21.69 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.64 kcal Total: -71.54 5.07 -66.47 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040521581.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.761 kcal (2) G-P(sol) polarization free energy of solvation -71.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.474 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds