Wall clock time and date at job start Wed Apr 1 2020 05:36:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50698 * 109.47144 * 2 1 4 4 O 1.33492 * 126.83238 * 269.97884 * 3 2 1 5 5 N 1.20664 * 113.15774 * 180.02562 * 4 3 2 6 6 C 1.30012 * 112.29808 * 359.70917 * 5 4 3 7 7 C 1.50704 * 127.33358 * 180.30293 * 6 5 4 8 8 C 1.37363 * 126.82657 * 90.00356 * 3 2 1 9 9 C 1.47395 * 128.56443 * 359.95364 * 8 3 2 10 10 O 1.21610 * 120.00056 * 90.00515 * 9 8 3 11 11 N 1.34779 * 120.00407 * 270.00440 * 9 8 3 12 12 C 1.47486 * 125.66179 * 0.02562 * 11 9 8 13 13 C 1.55025 * 104.90987 * 203.99087 * 12 11 9 14 14 C 1.54781 * 101.63391 * 323.76850 * 13 12 11 15 15 C 1.47186 * 125.66503 * 180.02562 * 11 9 8 16 16 C 1.52241 * 110.25557 * 276.09822 * 14 13 12 17 17 C 1.53170 * 109.65258 * 177.82187 * 16 14 13 18 18 C 1.53189 * 109.27684 * 60.16755 * 17 16 14 19 19 N 1.46931 * 108.92780 * 304.78014 * 18 17 16 20 20 C 1.36930 * 120.70497 * 234.13588 * 19 18 17 21 21 H 1.07998 * 120.00049 * 27.26285 * 20 19 18 22 22 C 1.38813 * 120.00308 * 207.25315 * 20 19 18 23 23 N 1.31620 * 120.00047 * 17.20737 * 22 20 19 24 24 Si 1.86807 * 120.00057 * 197.21080 * 22 20 19 25 25 H 1.48498 * 109.47307 * 60.00031 * 24 22 20 26 26 H 1.48498 * 109.46707 * 179.97438 * 24 22 20 27 27 H 1.48501 * 109.46776 * 299.99858 * 24 22 20 28 28 C 1.47081 * 118.59021 * 54.16818 * 19 18 17 29 29 H 1.08997 * 109.47139 * 59.99516 * 1 2 3 30 30 H 1.08998 * 109.46903 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47094 * 299.99587 * 1 2 3 32 32 H 1.09001 * 109.47094 * 240.00413 * 2 1 3 33 33 H 1.08997 * 109.47139 * 120.00483 * 2 1 3 34 34 H 1.09002 * 109.47221 * 270.14931 * 7 6 5 35 35 H 1.08997 * 109.47040 * 30.14842 * 7 6 5 36 36 H 1.08993 * 109.46918 * 150.15094 * 7 6 5 37 37 H 1.09003 * 110.35441 * 322.85895 * 12 11 9 38 38 H 1.09004 * 110.35027 * 85.03072 * 12 11 9 39 39 H 1.09004 * 111.01115 * 81.72193 * 13 12 11 40 40 H 1.08994 * 111.01639 * 205.59310 * 13 12 11 41 41 H 1.08996 * 109.91051 * 297.85744 * 15 11 9 42 42 H 1.09008 * 109.91085 * 58.93436 * 15 11 9 43 43 H 1.09007 * 109.44062 * 297.87207 * 16 14 13 44 44 H 1.08993 * 109.44612 * 57.79715 * 16 14 13 45 45 H 1.08992 * 109.50448 * 180.11421 * 17 16 14 46 46 H 1.09001 * 109.50065 * 300.23068 * 17 16 14 47 47 H 1.08991 * 109.56040 * 64.61898 * 18 17 16 48 48 H 1.08997 * 109.56090 * 184.95045 * 18 17 16 49 49 H 0.96995 * 119.99888 * 180.02562 * 23 22 20 50 50 H 1.09004 * 109.57892 * 187.73566 * 28 19 18 51 51 H 1.08993 * 109.58436 * 67.33837 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 2.2995 2.1751 -1.0685 5 7 2.6907 3.2804 -0.7832 6 6 2.7498 3.4662 0.5022 7 6 3.1830 4.7151 1.2261 8 6 2.3069 2.1970 1.0995 9 6 2.1822 1.8468 2.5258 10 8 3.1234 1.3507 3.1147 11 7 1.0249 2.0764 3.1775 12 6 -0.1905 2.6689 2.5887 13 6 -0.9596 3.2772 3.7894 14 6 -0.6670 2.2435 4.9036 15 6 0.7643 1.7773 4.5949 16 6 -1.6441 1.0796 4.8126 17 6 -1.3083 0.0399 5.8861 18 6 -1.4185 0.6880 7.2698 19 7 -0.5569 1.8775 7.3090 20 6 0.3882 2.0243 8.2889 21 1 0.8219 1.1524 8.7559 22 6 0.7890 3.2938 8.6821 23 7 0.0498 4.3402 8.3805 24 14 2.3776 3.5171 9.6392 25 1 3.5175 3.0155 8.8304 26 1 2.5782 4.9583 9.9360 27 1 2.3002 2.7552 10.9115 28 6 -0.7315 2.9075 6.2737 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 4.2580 4.6784 1.4027 35 1 2.9441 5.5882 0.6191 36 1 2.6602 4.7817 2.1802 37 1 0.0753 3.4483 1.8745 38 1 -0.7904 1.8993 2.1029 39 1 -0.5604 4.2565 4.0536 40 1 -2.0277 3.3359 3.5802 41 1 0.8513 0.7051 4.7701 42 1 1.4737 2.3149 5.2242 43 1 -2.6594 1.4454 4.9669 44 1 -1.5701 0.6198 3.8272 45 1 -2.0079 -0.7930 5.8175 46 1 -0.2921 -0.3242 5.7347 47 1 -2.4522 0.9798 7.4548 48 1 -1.0959 -0.0215 8.0318 49 1 0.3301 5.2273 8.6549 50 1 0.0633 3.6487 6.3581 51 1 -1.6998 3.3916 6.3997 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001040524077.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:36:13 Heat of formation + Delta-G solvation = 40.218337 kcal Electronic energy + Delta-G solvation = -32831.269203 eV Core-core repulsion = 28734.166421 eV Total energy + Delta-G solvation = -4097.102782 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -44.99068 -40.21508 -38.35942 -35.82669 -35.04543 -34.64824 -33.07029 -31.62691 -30.47120 -30.00966 -29.05531 -28.91689 -26.44021 -25.35565 -24.35467 -23.84179 -22.78679 -22.23971 -20.54567 -20.40437 -19.41031 -18.22965 -17.88502 -17.40839 -16.68460 -16.50961 -15.99187 -15.48850 -14.92814 -14.80880 -14.21395 -14.03782 -14.00891 -13.83649 -13.54669 -13.34808 -13.33958 -13.11198 -13.03572 -12.82734 -12.70512 -12.53862 -12.29734 -12.02138 -11.91642 -11.77314 -11.61572 -11.29440 -11.09305 -11.00994 -10.88272 -10.69451 -10.47034 -10.36658 -10.20029 -10.09779 -9.93788 -9.84164 -9.57735 -9.49986 -9.45457 -8.51132 -8.43801 -6.71089 -5.82179 -3.23024 1.17510 1.79267 2.45998 2.69157 3.18973 3.38995 3.44519 3.48110 3.95822 4.07713 4.46628 4.50735 4.66857 4.76087 4.80681 4.83965 4.98163 5.02677 5.14057 5.28001 5.34224 5.35671 5.37614 5.41692 5.47548 5.49702 5.50319 5.57122 5.60872 5.66346 5.71321 5.88542 5.91034 5.98712 6.00265 6.12348 6.14082 6.24174 6.33359 6.35857 6.43813 6.63669 6.68373 6.75865 6.82525 6.96587 7.23744 7.54482 7.61936 7.78043 8.08694 8.19566 8.40730 9.18004 9.81358 10.37615 11.26584 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012859 B = 0.003688 C = 0.003228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2176.925941 B = 7590.632051 C = 8671.936184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.046 4.046 3 C 0.015 3.985 4 O 0.095 5.905 5 N -0.358 5.358 6 C 0.055 3.945 7 C -0.079 4.079 8 C -0.235 4.235 9 C 0.607 3.393 10 O -0.526 6.526 11 N -0.603 5.603 12 C 0.101 3.899 13 C -0.122 4.122 14 C -0.090 4.090 15 C 0.130 3.870 16 C -0.093 4.093 17 C -0.138 4.138 18 C 0.145 3.855 19 N -0.591 5.591 20 C -0.251 4.251 21 H 0.066 0.934 22 C 0.005 3.995 23 N -0.904 5.904 24 Si 0.897 3.103 25 H -0.282 1.282 26 H -0.290 1.290 27 H -0.282 1.282 28 C 0.189 3.811 29 H 0.063 0.937 30 H 0.073 0.927 31 H 0.064 0.936 32 H 0.094 0.906 33 H 0.099 0.901 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.085 0.915 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.079 0.921 40 H 0.081 0.919 41 H 0.070 0.930 42 H 0.078 0.922 43 H 0.059 0.941 44 H 0.045 0.955 45 H 0.051 0.949 46 H 0.060 0.940 47 H 0.017 0.983 48 H 0.052 0.948 49 H 0.254 0.746 50 H 0.090 0.910 51 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.757 -4.821 -17.930 18.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.085 4.085 3 C -0.048 4.048 4 O 0.034 5.966 5 N -0.065 5.065 6 C -0.107 4.107 7 C -0.136 4.136 8 C -0.242 4.242 9 C 0.393 3.607 10 O -0.403 6.403 11 N -0.336 5.336 12 C -0.022 4.022 13 C -0.161 4.161 14 C -0.092 4.092 15 C 0.009 3.991 16 C -0.131 4.131 17 C -0.177 4.177 18 C 0.018 3.982 19 N -0.313 5.313 20 C -0.381 4.381 21 H 0.083 0.917 22 C -0.193 4.193 23 N -0.548 5.548 24 Si 0.727 3.273 25 H -0.209 1.209 26 H -0.216 1.216 27 H -0.209 1.209 28 C 0.063 3.937 29 H 0.082 0.918 30 H 0.092 0.908 31 H 0.082 0.918 32 H 0.113 0.887 33 H 0.117 0.883 34 H 0.104 0.896 35 H 0.101 0.899 36 H 0.104 0.896 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.098 0.902 40 H 0.100 0.900 41 H 0.088 0.912 42 H 0.097 0.903 43 H 0.078 0.922 44 H 0.064 0.936 45 H 0.069 0.931 46 H 0.078 0.922 47 H 0.035 0.965 48 H 0.071 0.929 49 H 0.064 0.936 50 H 0.108 0.892 51 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -1.877 -4.181 -18.617 19.172 hybrid contribution 0.740 -0.010 1.162 1.377 sum -1.137 -4.191 -17.455 17.987 Atomic orbital electron populations 1.21853 0.92882 1.03218 1.03028 1.20240 0.97104 0.85891 1.05232 1.24608 0.98796 0.96325 0.85114 1.84507 1.61688 1.17504 1.32946 1.73600 1.17639 0.98683 1.16568 1.24756 1.00406 0.96574 0.88958 1.20243 1.02645 0.91034 0.99703 1.21941 1.11817 0.95263 0.95174 1.16454 0.81799 0.78812 0.83680 1.90848 1.37825 1.43994 1.67618 1.48619 1.11597 1.60764 1.12584 1.22403 0.85992 0.97036 0.96767 1.22814 1.00093 0.99442 0.93748 1.21895 0.92954 0.95491 0.98860 1.22077 0.97181 1.01192 0.78654 1.21281 0.98392 0.95643 0.97764 1.22098 1.00771 0.97170 0.97704 1.20901 0.93645 0.89955 0.93672 1.44051 1.39272 1.19365 1.28636 1.19130 1.13410 0.91822 1.13701 0.91674 1.24973 0.98934 0.96357 0.99070 1.70002 1.36442 0.98404 1.49974 0.86440 0.84102 0.76757 0.79983 1.20883 1.21626 1.20851 1.20657 1.00803 0.90641 0.81602 0.91833 0.90837 0.91750 0.88748 0.88291 0.89561 0.89914 0.89618 0.91464 0.91487 0.90222 0.90035 0.91216 0.90325 0.92235 0.93580 0.93054 0.92183 0.96489 0.92894 0.93600 0.89158 0.95810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.89 37.16 0.37 -0.74 16 2 C -0.05 -0.40 6.38 -27.88 -0.18 -0.58 16 3 C 0.02 0.18 6.80 -34.63 -0.24 -0.06 16 4 O 0.10 1.17 11.06 18.65 0.21 1.38 16 5 N -0.36 -4.84 12.01 34.78 0.42 -4.42 16 6 C 0.06 0.74 7.59 -79.77 -0.61 0.13 16 7 C -0.08 -0.88 10.49 36.01 0.38 -0.50 16 8 C -0.23 -3.29 5.14 -102.89 -0.53 -3.82 16 9 C 0.61 10.07 7.63 -12.53 -0.10 9.97 16 10 O -0.53 -10.84 17.44 5.27 0.09 -10.75 16 11 N -0.60 -9.29 3.33 -171.95 -0.57 -9.86 16 12 C 0.10 1.24 6.36 -2.43 -0.02 1.23 16 13 C -0.12 -1.65 6.01 -24.72 -0.15 -1.80 16 14 C -0.09 -1.49 0.54 -153.93 -0.08 -1.57 16 15 C 0.13 2.33 5.76 -3.33 -0.02 2.31 16 16 C -0.09 -1.38 4.59 -27.03 -0.12 -1.50 16 17 C -0.14 -2.22 5.90 -26.55 -0.16 -2.38 16 18 C 0.14 2.85 6.49 -3.71 -0.02 2.83 16 19 N -0.59 -13.88 2.88 -172.69 -0.50 -14.38 16 20 C -0.25 -6.65 9.60 -15.06 -0.14 -6.80 16 21 H 0.07 1.72 7.89 -52.49 -0.41 1.31 16 22 C 0.01 0.14 4.92 -17.43 -0.09 0.05 16 23 N -0.90 -25.23 11.17 55.49 0.62 -24.61 16 24 Si 0.90 21.59 29.59 -169.99 -5.03 16.56 16 25 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 26 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 27 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 28 C 0.19 4.10 3.87 -4.04 -0.02 4.08 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.54 6.21 -51.93 -0.32 0.22 16 32 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.10 0.94 8.11 -51.93 -0.42 0.52 16 34 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 37 H 0.07 0.77 7.69 -51.93 -0.40 0.38 16 38 H 0.07 0.72 5.88 -51.93 -0.31 0.41 16 39 H 0.08 1.15 8.02 -51.93 -0.42 0.73 16 40 H 0.08 0.95 8.01 -51.93 -0.42 0.53 16 41 H 0.07 1.31 6.01 -51.93 -0.31 0.99 16 42 H 0.08 1.70 7.66 -51.92 -0.40 1.30 16 43 H 0.06 0.86 8.14 -51.92 -0.42 0.44 16 44 H 0.05 0.60 7.54 -51.93 -0.39 0.21 16 45 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 46 H 0.06 1.03 6.34 -51.93 -0.33 0.70 16 47 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 48 H 0.05 1.04 7.93 -51.93 -0.41 0.63 16 49 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 50 H 0.09 2.25 5.87 -51.93 -0.30 1.94 16 51 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 399.67 15.07 6.02 6.02 Total: -1.00 -31.14 399.67 -8.66 -39.80 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: -8.21 Total: -0.60 kcal Atomic # 6 Polarization: 2.57 SS G_CDS: -1.72 Total: 0.85 kcal Atomic # 7 Polarization: -53.25 SS G_CDS: -0.03 Total: -53.28 kcal Atomic # 8 Polarization: -9.67 SS G_CDS: 0.30 Total: -9.37 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.03 Total: 16.56 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -31.14 -8.66 -39.80 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040524077.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.022 kcal (2) G-P(sol) polarization free energy of solvation -31.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.804 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds