Wall clock time and date at job start Wed Apr 1 2020 05:36:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50698 * 109.47144 * 2 1 4 4 O 1.33492 * 126.83238 * 269.97884 * 3 2 1 5 5 N 1.20664 * 113.15774 * 180.02562 * 4 3 2 6 6 C 1.30012 * 112.29808 * 359.70917 * 5 4 3 7 7 C 1.50704 * 127.33358 * 180.30293 * 6 5 4 8 8 C 1.37363 * 126.82657 * 90.00356 * 3 2 1 9 9 C 1.47395 * 128.56443 * 359.95364 * 8 3 2 10 10 O 1.21610 * 120.00056 * 90.00515 * 9 8 3 11 11 N 1.34779 * 120.00407 * 270.00440 * 9 8 3 12 12 C 1.47486 * 125.66179 * 0.02562 * 11 9 8 13 13 C 1.55025 * 104.90987 * 203.99087 * 12 11 9 14 14 C 1.54781 * 101.63391 * 323.76850 * 13 12 11 15 15 C 1.47186 * 125.66503 * 180.02562 * 11 9 8 16 16 C 1.52241 * 110.25557 * 276.09822 * 14 13 12 17 17 C 1.53170 * 109.65258 * 177.82187 * 16 14 13 18 18 C 1.53189 * 109.27684 * 60.16755 * 17 16 14 19 19 N 1.46931 * 108.92780 * 304.78014 * 18 17 16 20 20 C 1.36930 * 120.70497 * 234.13588 * 19 18 17 21 21 H 1.07998 * 120.00049 * 27.26285 * 20 19 18 22 22 C 1.38813 * 120.00308 * 207.25315 * 20 19 18 23 23 N 1.31620 * 120.00047 * 17.20737 * 22 20 19 24 24 Si 1.86807 * 120.00057 * 197.21080 * 22 20 19 25 25 H 1.48498 * 109.47307 * 60.00031 * 24 22 20 26 26 H 1.48498 * 109.46707 * 179.97438 * 24 22 20 27 27 H 1.48501 * 109.46776 * 299.99858 * 24 22 20 28 28 C 1.47081 * 118.59021 * 54.16818 * 19 18 17 29 29 H 1.08997 * 109.47139 * 59.99516 * 1 2 3 30 30 H 1.08998 * 109.46903 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47094 * 299.99587 * 1 2 3 32 32 H 1.09001 * 109.47094 * 240.00413 * 2 1 3 33 33 H 1.08997 * 109.47139 * 120.00483 * 2 1 3 34 34 H 1.09002 * 109.47221 * 270.14931 * 7 6 5 35 35 H 1.08997 * 109.47040 * 30.14842 * 7 6 5 36 36 H 1.08993 * 109.46918 * 150.15094 * 7 6 5 37 37 H 1.09003 * 110.35441 * 322.85895 * 12 11 9 38 38 H 1.09004 * 110.35027 * 85.03072 * 12 11 9 39 39 H 1.09004 * 111.01115 * 81.72193 * 13 12 11 40 40 H 1.08994 * 111.01639 * 205.59310 * 13 12 11 41 41 H 1.08996 * 109.91051 * 297.85744 * 15 11 9 42 42 H 1.09008 * 109.91085 * 58.93436 * 15 11 9 43 43 H 1.09007 * 109.44062 * 297.87207 * 16 14 13 44 44 H 1.08993 * 109.44612 * 57.79715 * 16 14 13 45 45 H 1.08992 * 109.50448 * 180.11421 * 17 16 14 46 46 H 1.09001 * 109.50065 * 300.23068 * 17 16 14 47 47 H 1.08991 * 109.56040 * 64.61898 * 18 17 16 48 48 H 1.08997 * 109.56090 * 184.95045 * 18 17 16 49 49 H 0.96995 * 119.99888 * 180.02562 * 23 22 20 50 50 H 1.09004 * 109.57892 * 187.73566 * 28 19 18 51 51 H 1.08993 * 109.58436 * 67.33837 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 2.2995 2.1751 -1.0685 5 7 2.6907 3.2804 -0.7832 6 6 2.7498 3.4662 0.5022 7 6 3.1830 4.7151 1.2261 8 6 2.3069 2.1970 1.0995 9 6 2.1822 1.8468 2.5258 10 8 3.1234 1.3507 3.1147 11 7 1.0249 2.0764 3.1775 12 6 -0.1905 2.6689 2.5887 13 6 -0.9596 3.2772 3.7894 14 6 -0.6670 2.2435 4.9036 15 6 0.7643 1.7773 4.5949 16 6 -1.6441 1.0796 4.8126 17 6 -1.3083 0.0399 5.8861 18 6 -1.4185 0.6880 7.2698 19 7 -0.5569 1.8775 7.3090 20 6 0.3882 2.0243 8.2889 21 1 0.8219 1.1524 8.7559 22 6 0.7890 3.2938 8.6821 23 7 0.0498 4.3402 8.3805 24 14 2.3776 3.5171 9.6392 25 1 3.5175 3.0155 8.8304 26 1 2.5782 4.9583 9.9360 27 1 2.3002 2.7552 10.9115 28 6 -0.7315 2.9075 6.2737 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 4.2580 4.6784 1.4027 35 1 2.9441 5.5882 0.6191 36 1 2.6602 4.7817 2.1802 37 1 0.0753 3.4483 1.8745 38 1 -0.7904 1.8993 2.1029 39 1 -0.5604 4.2565 4.0536 40 1 -2.0277 3.3359 3.5802 41 1 0.8513 0.7051 4.7701 42 1 1.4737 2.3149 5.2242 43 1 -2.6594 1.4454 4.9669 44 1 -1.5701 0.6198 3.8272 45 1 -2.0079 -0.7930 5.8175 46 1 -0.2921 -0.3242 5.7347 47 1 -2.4522 0.9798 7.4548 48 1 -1.0959 -0.0215 8.0318 49 1 0.3301 5.2273 8.6549 50 1 0.0633 3.6487 6.3581 51 1 -1.6998 3.3916 6.3997 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001040524077.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:36:12 Heat of formation + Delta-G solvation = 22.736288 kcal Electronic energy + Delta-G solvation = -32832.027281 eV Core-core repulsion = 28734.166421 eV Total energy + Delta-G solvation = -4097.860861 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -45.99377 -41.55272 -39.78024 -37.35729 -35.88415 -35.62424 -34.79909 -33.07282 -31.76414 -31.35283 -30.33352 -29.87131 -27.83357 -27.15945 -25.39316 -24.77740 -24.01024 -23.81982 -22.05014 -21.41578 -20.50000 -19.72088 -18.90555 -18.60734 -18.49516 -17.63979 -17.23161 -16.77764 -16.59705 -15.81826 -15.81325 -15.32512 -15.21010 -14.95755 -14.87931 -14.58413 -14.44280 -14.35343 -14.26581 -13.91857 -13.84649 -13.73497 -13.47294 -13.39183 -13.08413 -12.89847 -12.85923 -12.62744 -12.54277 -12.44784 -12.23446 -12.22587 -11.96969 -11.87622 -11.80888 -11.46411 -11.33548 -11.06499 -11.02431 -10.96396 -10.53257 -10.49411 -9.78373 -8.64742 -7.88166 -5.29663 0.21995 0.75877 1.19710 1.41436 1.45381 1.50344 1.64549 2.06171 2.49001 2.96381 3.15649 3.25312 3.38342 3.57795 3.70758 3.81616 3.84848 3.95296 4.07676 4.16753 4.23469 4.24466 4.29520 4.35239 4.43409 4.46262 4.46778 4.58111 4.60940 4.66547 4.72321 4.78420 4.88147 4.95255 4.98456 4.98785 4.99745 5.05555 5.09455 5.14034 5.16856 5.21507 5.34284 5.36514 5.39489 5.49897 5.58983 5.67940 5.77402 6.35564 6.39711 6.89403 7.11425 7.16537 7.89033 8.38490 9.17381 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012859 B = 0.003688 C = 0.003228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2176.925941 B = 7590.632051 C = 8671.936184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.049 4.049 3 C 0.040 3.960 4 O 0.100 5.900 5 N -0.369 5.369 6 C 0.050 3.950 7 C -0.080 4.080 8 C -0.264 4.264 9 C 0.611 3.389 10 O -0.578 6.578 11 N -0.598 5.598 12 C 0.105 3.895 13 C -0.116 4.116 14 C -0.081 4.081 15 C 0.142 3.858 16 C -0.087 4.087 17 C -0.129 4.129 18 C 0.139 3.861 19 N -0.610 5.610 20 C -0.257 4.257 21 H 0.060 0.940 22 C -0.041 4.041 23 N -0.928 5.928 24 Si 0.949 3.051 25 H -0.289 1.289 26 H -0.291 1.291 27 H -0.274 1.274 28 C 0.200 3.800 29 H 0.073 0.927 30 H 0.092 0.908 31 H 0.053 0.947 32 H 0.122 0.878 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.102 0.898 36 H 0.076 0.924 37 H 0.081 0.919 38 H 0.100 0.900 39 H 0.063 0.937 40 H 0.114 0.886 41 H 0.061 0.939 42 H 0.027 0.973 43 H 0.073 0.927 44 H 0.080 0.920 45 H 0.086 0.914 46 H 0.046 0.954 47 H 0.020 0.980 48 H 0.045 0.955 49 H 0.249 0.751 50 H 0.049 0.951 51 H 0.006 0.994 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.502 -6.225 -20.829 22.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.087 4.087 3 C -0.024 4.024 4 O 0.040 5.960 5 N -0.076 5.076 6 C -0.112 4.112 7 C -0.137 4.137 8 C -0.271 4.271 9 C 0.399 3.601 10 O -0.458 6.458 11 N -0.329 5.329 12 C -0.016 4.016 13 C -0.155 4.155 14 C -0.083 4.083 15 C 0.020 3.980 16 C -0.125 4.125 17 C -0.168 4.168 18 C 0.014 3.986 19 N -0.333 5.333 20 C -0.388 4.388 21 H 0.077 0.923 22 C -0.237 4.237 23 N -0.574 5.574 24 Si 0.778 3.222 25 H -0.216 1.216 26 H -0.217 1.217 27 H -0.200 1.200 28 C 0.074 3.926 29 H 0.092 0.908 30 H 0.111 0.889 31 H 0.072 0.928 32 H 0.140 0.860 33 H 0.107 0.893 34 H 0.107 0.893 35 H 0.121 0.879 36 H 0.095 0.905 37 H 0.099 0.901 38 H 0.118 0.882 39 H 0.082 0.918 40 H 0.132 0.868 41 H 0.079 0.921 42 H 0.046 0.954 43 H 0.091 0.909 44 H 0.098 0.902 45 H 0.104 0.896 46 H 0.065 0.935 47 H 0.038 0.962 48 H 0.064 0.936 49 H 0.058 0.942 50 H 0.067 0.933 51 H 0.025 0.975 Dipole moment (debyes) X Y Z Total from point charges -3.665 -5.594 -21.543 22.558 hybrid contribution 1.277 0.370 2.077 2.466 sum -2.388 -5.224 -19.467 20.297 Atomic orbital electron populations 1.21858 0.91241 1.04521 1.02971 1.20488 0.98364 0.83773 1.06109 1.25143 0.96285 0.96907 0.84040 1.84503 1.61355 1.17288 1.32884 1.73595 1.18331 0.99301 1.16401 1.25019 1.00162 0.96945 0.89052 1.20307 1.02679 0.91217 0.99485 1.21684 1.14819 0.96575 0.94060 1.16747 0.81117 0.77699 0.84545 1.90813 1.39539 1.46402 1.69042 1.48620 1.12538 1.60260 1.11514 1.22612 0.84575 0.98173 0.96244 1.22821 1.02212 0.97664 0.92760 1.21662 0.92819 0.97134 0.96704 1.21719 0.96876 0.99783 0.79642 1.21282 0.98020 0.94194 0.98975 1.21985 1.01080 0.98271 0.95428 1.21078 0.92802 0.88549 0.96215 1.44308 1.39606 1.20741 1.28617 1.19375 1.13919 0.91649 1.13815 0.92271 1.25536 1.01250 0.96333 1.00606 1.70123 1.37605 0.98330 1.51380 0.85619 0.81042 0.76453 0.79091 1.21619 1.21707 1.19957 1.20396 0.98064 0.89996 0.84152 0.90811 0.88920 0.92774 0.85999 0.89284 0.89297 0.87935 0.90464 0.90113 0.88235 0.91845 0.86818 0.92053 0.95422 0.90868 0.90192 0.89555 0.93482 0.96249 0.93626 0.94194 0.93277 0.97549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 9.89 71.98 0.71 -0.81 16 2 C -0.05 -0.69 6.38 29.85 0.19 -0.50 16 3 C 0.04 0.85 6.80 25.48 0.17 1.02 16 4 O 0.10 2.23 11.06 76.99 0.85 3.08 16 5 N -0.37 -9.32 12.01 -44.78 -0.54 -9.86 16 6 C 0.05 1.29 7.59 45.16 0.34 1.64 16 7 C -0.08 -1.74 10.49 71.24 0.75 -1.00 16 8 C -0.26 -7.12 5.14 -18.74 -0.10 -7.22 16 9 C 0.61 20.36 7.63 86.65 0.66 21.02 16 10 O -0.58 -24.71 17.44 -4.06 -0.07 -24.78 16 11 N -0.60 -18.13 3.33 -816.17 -2.72 -20.85 16 12 C 0.11 2.30 6.36 86.88 0.55 2.86 16 13 C -0.12 -2.91 6.01 31.89 0.19 -2.72 16 14 C -0.08 -2.63 0.54 -51.80 -0.03 -2.66 16 15 C 0.14 5.20 5.76 86.47 0.50 5.70 16 16 C -0.09 -2.30 4.59 30.40 0.14 -2.16 16 17 C -0.13 -3.85 5.90 30.71 0.18 -3.66 16 18 C 0.14 5.43 6.49 86.36 0.56 5.99 16 19 N -0.61 -29.46 2.88 -700.26 -2.02 -31.48 16 20 C -0.26 -14.15 9.60 84.03 0.81 -13.34 16 21 H 0.06 3.25 7.89 -2.91 -0.02 3.22 16 22 C -0.04 -2.32 4.92 84.86 0.42 -1.90 16 23 N -0.93 -54.08 11.17 21.65 0.24 -53.84 16 24 Si 0.95 46.09 29.59 68.60 2.03 48.11 16 25 H -0.29 -14.23 7.11 99.48 0.71 -13.52 16 26 H -0.29 -14.06 7.11 99.48 0.71 -13.36 16 27 H -0.27 -12.81 7.11 99.48 0.71 -12.10 16 28 C 0.20 8.94 3.87 86.07 0.33 9.27 16 29 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.05 0.67 6.21 -2.39 -0.01 0.66 16 32 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.09 1.49 8.11 -2.39 -0.02 1.47 16 34 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 37 H 0.08 1.63 7.69 -2.39 -0.02 1.61 16 38 H 0.10 1.63 5.88 -2.38 -0.01 1.61 16 39 H 0.06 1.81 8.02 -2.38 -0.02 1.79 16 40 H 0.11 2.18 8.01 -2.39 -0.02 2.16 16 41 H 0.06 2.34 6.01 -2.39 -0.01 2.32 16 42 H 0.03 1.28 7.66 -2.38 -0.02 1.26 16 43 H 0.07 1.80 8.14 -2.38 -0.02 1.78 16 44 H 0.08 1.65 7.54 -2.39 -0.02 1.63 16 45 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 46 H 0.05 1.54 6.34 -2.39 -0.02 1.53 16 47 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 48 H 0.05 1.80 7.93 -2.39 -0.02 1.79 16 49 H 0.25 14.19 8.31 -92.71 -0.77 13.42 16 50 H 0.05 2.60 5.87 -2.38 -0.01 2.58 16 51 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 Total: -1.00 -72.59 399.67 5.09 -67.50 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: 0.93 Total: 10.60 kcal Atomic # 6 Polarization: 5.13 SS G_CDS: 6.38 Total: 11.51 kcal Atomic # 7 Polarization: -111.00 SS G_CDS: -5.03 Total: -116.03 kcal Atomic # 8 Polarization: -22.48 SS G_CDS: 0.78 Total: -21.70 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 2.03 Total: 48.11 kcal Total: -72.59 5.09 -67.50 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040524077.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.239 kcal (2) G-P(sol) polarization free energy of solvation -72.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.503 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds