Wall clock time and date at job start Wed Apr 1 2020 05:36:12
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 C 1.50698 * 109.47144 * 2 1
4 4 O 1.33492 * 126.83238 * 269.97884 * 3 2 1
5 5 N 1.20664 * 113.15774 * 180.02562 * 4 3 2
6 6 C 1.30012 * 112.29808 * 359.70917 * 5 4 3
7 7 C 1.50704 * 127.33358 * 180.30293 * 6 5 4
8 8 C 1.37363 * 126.82657 * 90.00356 * 3 2 1
9 9 C 1.47395 * 128.56443 * 359.95364 * 8 3 2
10 10 O 1.21610 * 120.00056 * 90.00515 * 9 8 3
11 11 N 1.34779 * 120.00407 * 270.00440 * 9 8 3
12 12 C 1.47486 * 125.66179 * 0.02562 * 11 9 8
13 13 C 1.55025 * 104.90987 * 203.99087 * 12 11 9
14 14 C 1.54781 * 101.63391 * 323.76850 * 13 12 11
15 15 C 1.47186 * 125.66503 * 180.02562 * 11 9 8
16 16 C 1.52241 * 110.25557 * 276.09822 * 14 13 12
17 17 C 1.53170 * 109.65258 * 177.82187 * 16 14 13
18 18 C 1.53189 * 109.27684 * 60.16755 * 17 16 14
19 19 N 1.46931 * 108.92780 * 304.78014 * 18 17 16
20 20 C 1.36930 * 120.70497 * 234.13588 * 19 18 17
21 21 H 1.07998 * 120.00049 * 27.26285 * 20 19 18
22 22 C 1.38813 * 120.00308 * 207.25315 * 20 19 18
23 23 N 1.31620 * 120.00047 * 17.20737 * 22 20 19
24 24 Si 1.86807 * 120.00057 * 197.21080 * 22 20 19
25 25 H 1.48498 * 109.47307 * 60.00031 * 24 22 20
26 26 H 1.48498 * 109.46707 * 179.97438 * 24 22 20
27 27 H 1.48501 * 109.46776 * 299.99858 * 24 22 20
28 28 C 1.47081 * 118.59021 * 54.16818 * 19 18 17
29 29 H 1.08997 * 109.47139 * 59.99516 * 1 2 3
30 30 H 1.08998 * 109.46903 * 179.97438 * 1 2 3
31 31 H 1.09001 * 109.47094 * 299.99587 * 1 2 3
32 32 H 1.09001 * 109.47094 * 240.00413 * 2 1 3
33 33 H 1.08997 * 109.47139 * 120.00483 * 2 1 3
34 34 H 1.09002 * 109.47221 * 270.14931 * 7 6 5
35 35 H 1.08997 * 109.47040 * 30.14842 * 7 6 5
36 36 H 1.08993 * 109.46918 * 150.15094 * 7 6 5
37 37 H 1.09003 * 110.35441 * 322.85895 * 12 11 9
38 38 H 1.09004 * 110.35027 * 85.03072 * 12 11 9
39 39 H 1.09004 * 111.01115 * 81.72193 * 13 12 11
40 40 H 1.08994 * 111.01639 * 205.59310 * 13 12 11
41 41 H 1.08996 * 109.91051 * 297.85744 * 15 11 9
42 42 H 1.09008 * 109.91085 * 58.93436 * 15 11 9
43 43 H 1.09007 * 109.44062 * 297.87207 * 16 14 13
44 44 H 1.08993 * 109.44612 * 57.79715 * 16 14 13
45 45 H 1.08992 * 109.50448 * 180.11421 * 17 16 14
46 46 H 1.09001 * 109.50065 * 300.23068 * 17 16 14
47 47 H 1.08991 * 109.56040 * 64.61898 * 18 17 16
48 48 H 1.08997 * 109.56090 * 184.95045 * 18 17 16
49 49 H 0.96995 * 119.99888 * 180.02562 * 23 22 20
50 50 H 1.09004 * 109.57892 * 187.73566 * 28 19 18
51 51 H 1.08993 * 109.58436 * 67.33837 * 28 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0324 1.4208 0.0000
4 8 2.2995 2.1751 -1.0685
5 7 2.6907 3.2804 -0.7832
6 6 2.7498 3.4662 0.5022
7 6 3.1830 4.7151 1.2261
8 6 2.3069 2.1970 1.0995
9 6 2.1822 1.8468 2.5258
10 8 3.1234 1.3507 3.1147
11 7 1.0249 2.0764 3.1775
12 6 -0.1905 2.6689 2.5887
13 6 -0.9596 3.2772 3.7894
14 6 -0.6670 2.2435 4.9036
15 6 0.7643 1.7773 4.5949
16 6 -1.6441 1.0796 4.8126
17 6 -1.3083 0.0399 5.8861
18 6 -1.4185 0.6880 7.2698
19 7 -0.5569 1.8775 7.3090
20 6 0.3882 2.0243 8.2889
21 1 0.8219 1.1524 8.7559
22 6 0.7890 3.2938 8.6821
23 7 0.0498 4.3402 8.3805
24 14 2.3776 3.5171 9.6392
25 1 3.5175 3.0155 8.8304
26 1 2.5782 4.9583 9.9360
27 1 2.3002 2.7552 10.9115
28 6 -0.7315 2.9075 6.2737
29 1 -0.3633 0.5139 -0.8899
30 1 -0.3633 -1.0277 -0.0005
31 1 -0.3633 0.5138 0.8900
32 1 1.8934 -0.5138 -0.8900
33 1 1.8933 -0.5139 0.8899
34 1 4.2580 4.6784 1.4027
35 1 2.9441 5.5882 0.6191
36 1 2.6602 4.7817 2.1802
37 1 0.0753 3.4483 1.8745
38 1 -0.7904 1.8993 2.1029
39 1 -0.5604 4.2565 4.0536
40 1 -2.0277 3.3359 3.5802
41 1 0.8513 0.7051 4.7701
42 1 1.4737 2.3149 5.2242
43 1 -2.6594 1.4454 4.9669
44 1 -1.5701 0.6198 3.8272
45 1 -2.0079 -0.7930 5.8175
46 1 -0.2921 -0.3242 5.7347
47 1 -2.4522 0.9798 7.4548
48 1 -1.0959 -0.0215 8.0318
49 1 0.3301 5.2273 8.6549
50 1 0.0633 3.6487 6.3581
51 1 -1.6998 3.3916 6.3997
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001040524077.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:36:12
Heat of formation + Delta-G solvation = 22.736288 kcal
Electronic energy + Delta-G solvation = -32832.027281 eV
Core-core repulsion = 28734.166421 eV
Total energy + Delta-G solvation = -4097.860861 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 0.91 seconds
Orbital eigenvalues (eV)
-45.99377 -41.55272 -39.78024 -37.35729 -35.88415 -35.62424 -34.79909 -33.07282
-31.76414 -31.35283 -30.33352 -29.87131 -27.83357 -27.15945 -25.39316 -24.77740
-24.01024 -23.81982 -22.05014 -21.41578 -20.50000 -19.72088 -18.90555 -18.60734
-18.49516 -17.63979 -17.23161 -16.77764 -16.59705 -15.81826 -15.81325 -15.32512
-15.21010 -14.95755 -14.87931 -14.58413 -14.44280 -14.35343 -14.26581 -13.91857
-13.84649 -13.73497 -13.47294 -13.39183 -13.08413 -12.89847 -12.85923 -12.62744
-12.54277 -12.44784 -12.23446 -12.22587 -11.96969 -11.87622 -11.80888 -11.46411
-11.33548 -11.06499 -11.02431 -10.96396 -10.53257 -10.49411 -9.78373 -8.64742
-7.88166 -5.29663 0.21995 0.75877 1.19710 1.41436 1.45381 1.50344
1.64549 2.06171 2.49001 2.96381 3.15649 3.25312 3.38342 3.57795
3.70758 3.81616 3.84848 3.95296 4.07676 4.16753 4.23469 4.24466
4.29520 4.35239 4.43409 4.46262 4.46778 4.58111 4.60940 4.66547
4.72321 4.78420 4.88147 4.95255 4.98456 4.98785 4.99745 5.05555
5.09455 5.14034 5.16856 5.21507 5.34284 5.36514 5.39489 5.49897
5.58983 5.67940 5.77402 6.35564 6.39711 6.89403 7.11425 7.16537
7.89033 8.38490 9.17381
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.012859 B = 0.003688 C = 0.003228
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2176.925941 B = 7590.632051 C = 8671.936184
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.149 4.149
2 C -0.049 4.049
3 C 0.040 3.960
4 O 0.100 5.900
5 N -0.369 5.369
6 C 0.050 3.950
7 C -0.080 4.080
8 C -0.264 4.264
9 C 0.611 3.389
10 O -0.578 6.578
11 N -0.598 5.598
12 C 0.105 3.895
13 C -0.116 4.116
14 C -0.081 4.081
15 C 0.142 3.858
16 C -0.087 4.087
17 C -0.129 4.129
18 C 0.139 3.861
19 N -0.610 5.610
20 C -0.257 4.257
21 H 0.060 0.940
22 C -0.041 4.041
23 N -0.928 5.928
24 Si 0.949 3.051
25 H -0.289 1.289
26 H -0.291 1.291
27 H -0.274 1.274
28 C 0.200 3.800
29 H 0.073 0.927
30 H 0.092 0.908
31 H 0.053 0.947
32 H 0.122 0.878
33 H 0.089 0.911
34 H 0.089 0.911
35 H 0.102 0.898
36 H 0.076 0.924
37 H 0.081 0.919
38 H 0.100 0.900
39 H 0.063 0.937
40 H 0.114 0.886
41 H 0.061 0.939
42 H 0.027 0.973
43 H 0.073 0.927
44 H 0.080 0.920
45 H 0.086 0.914
46 H 0.046 0.954
47 H 0.020 0.980
48 H 0.045 0.955
49 H 0.249 0.751
50 H 0.049 0.951
51 H 0.006 0.994
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.502 -6.225 -20.829 22.200
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.206 4.206
2 C -0.087 4.087
3 C -0.024 4.024
4 O 0.040 5.960
5 N -0.076 5.076
6 C -0.112 4.112
7 C -0.137 4.137
8 C -0.271 4.271
9 C 0.399 3.601
10 O -0.458 6.458
11 N -0.329 5.329
12 C -0.016 4.016
13 C -0.155 4.155
14 C -0.083 4.083
15 C 0.020 3.980
16 C -0.125 4.125
17 C -0.168 4.168
18 C 0.014 3.986
19 N -0.333 5.333
20 C -0.388 4.388
21 H 0.077 0.923
22 C -0.237 4.237
23 N -0.574 5.574
24 Si 0.778 3.222
25 H -0.216 1.216
26 H -0.217 1.217
27 H -0.200 1.200
28 C 0.074 3.926
29 H 0.092 0.908
30 H 0.111 0.889
31 H 0.072 0.928
32 H 0.140 0.860
33 H 0.107 0.893
34 H 0.107 0.893
35 H 0.121 0.879
36 H 0.095 0.905
37 H 0.099 0.901
38 H 0.118 0.882
39 H 0.082 0.918
40 H 0.132 0.868
41 H 0.079 0.921
42 H 0.046 0.954
43 H 0.091 0.909
44 H 0.098 0.902
45 H 0.104 0.896
46 H 0.065 0.935
47 H 0.038 0.962
48 H 0.064 0.936
49 H 0.058 0.942
50 H 0.067 0.933
51 H 0.025 0.975
Dipole moment (debyes) X Y Z Total
from point charges -3.665 -5.594 -21.543 22.558
hybrid contribution 1.277 0.370 2.077 2.466
sum -2.388 -5.224 -19.467 20.297
Atomic orbital electron populations
1.21858 0.91241 1.04521 1.02971 1.20488 0.98364 0.83773 1.06109
1.25143 0.96285 0.96907 0.84040 1.84503 1.61355 1.17288 1.32884
1.73595 1.18331 0.99301 1.16401 1.25019 1.00162 0.96945 0.89052
1.20307 1.02679 0.91217 0.99485 1.21684 1.14819 0.96575 0.94060
1.16747 0.81117 0.77699 0.84545 1.90813 1.39539 1.46402 1.69042
1.48620 1.12538 1.60260 1.11514 1.22612 0.84575 0.98173 0.96244
1.22821 1.02212 0.97664 0.92760 1.21662 0.92819 0.97134 0.96704
1.21719 0.96876 0.99783 0.79642 1.21282 0.98020 0.94194 0.98975
1.21985 1.01080 0.98271 0.95428 1.21078 0.92802 0.88549 0.96215
1.44308 1.39606 1.20741 1.28617 1.19375 1.13919 0.91649 1.13815
0.92271 1.25536 1.01250 0.96333 1.00606 1.70123 1.37605 0.98330
1.51380 0.85619 0.81042 0.76453 0.79091 1.21619 1.21707 1.19957
1.20396 0.98064 0.89996 0.84152 0.90811 0.88920 0.92774 0.85999
0.89284 0.89297 0.87935 0.90464 0.90113 0.88235 0.91845 0.86818
0.92053 0.95422 0.90868 0.90192 0.89555 0.93482 0.96249 0.93626
0.94194 0.93277 0.97549
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.53 9.89 71.98 0.71 -0.81 16
2 C -0.05 -0.69 6.38 29.85 0.19 -0.50 16
3 C 0.04 0.85 6.80 25.48 0.17 1.02 16
4 O 0.10 2.23 11.06 76.99 0.85 3.08 16
5 N -0.37 -9.32 12.01 -44.78 -0.54 -9.86 16
6 C 0.05 1.29 7.59 45.16 0.34 1.64 16
7 C -0.08 -1.74 10.49 71.24 0.75 -1.00 16
8 C -0.26 -7.12 5.14 -18.74 -0.10 -7.22 16
9 C 0.61 20.36 7.63 86.65 0.66 21.02 16
10 O -0.58 -24.71 17.44 -4.06 -0.07 -24.78 16
11 N -0.60 -18.13 3.33 -816.17 -2.72 -20.85 16
12 C 0.11 2.30 6.36 86.88 0.55 2.86 16
13 C -0.12 -2.91 6.01 31.89 0.19 -2.72 16
14 C -0.08 -2.63 0.54 -51.80 -0.03 -2.66 16
15 C 0.14 5.20 5.76 86.47 0.50 5.70 16
16 C -0.09 -2.30 4.59 30.40 0.14 -2.16 16
17 C -0.13 -3.85 5.90 30.71 0.18 -3.66 16
18 C 0.14 5.43 6.49 86.36 0.56 5.99 16
19 N -0.61 -29.46 2.88 -700.26 -2.02 -31.48 16
20 C -0.26 -14.15 9.60 84.03 0.81 -13.34 16
21 H 0.06 3.25 7.89 -2.91 -0.02 3.22 16
22 C -0.04 -2.32 4.92 84.86 0.42 -1.90 16
23 N -0.93 -54.08 11.17 21.65 0.24 -53.84 16
24 Si 0.95 46.09 29.59 68.60 2.03 48.11 16
25 H -0.29 -14.23 7.11 99.48 0.71 -13.52 16
26 H -0.29 -14.06 7.11 99.48 0.71 -13.36 16
27 H -0.27 -12.81 7.11 99.48 0.71 -12.10 16
28 C 0.20 8.94 3.87 86.07 0.33 9.27 16
29 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16
30 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16
31 H 0.05 0.67 6.21 -2.39 -0.01 0.66 16
32 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16
33 H 0.09 1.49 8.11 -2.39 -0.02 1.47 16
34 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16
35 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16
36 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16
37 H 0.08 1.63 7.69 -2.39 -0.02 1.61 16
38 H 0.10 1.63 5.88 -2.38 -0.01 1.61 16
39 H 0.06 1.81 8.02 -2.38 -0.02 1.79 16
40 H 0.11 2.18 8.01 -2.39 -0.02 2.16 16
41 H 0.06 2.34 6.01 -2.39 -0.01 2.32 16
42 H 0.03 1.28 7.66 -2.38 -0.02 1.26 16
43 H 0.07 1.80 8.14 -2.38 -0.02 1.78 16
44 H 0.08 1.65 7.54 -2.39 -0.02 1.63 16
45 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16
46 H 0.05 1.54 6.34 -2.39 -0.02 1.53 16
47 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16
48 H 0.05 1.80 7.93 -2.39 -0.02 1.79 16
49 H 0.25 14.19 8.31 -92.71 -0.77 13.42 16
50 H 0.05 2.60 5.87 -2.38 -0.01 2.58 16
51 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16
Total: -1.00 -72.59 399.67 5.09 -67.50
By element:
Atomic # 1 Polarization: 9.67 SS G_CDS: 0.93 Total: 10.60 kcal
Atomic # 6 Polarization: 5.13 SS G_CDS: 6.38 Total: 11.51 kcal
Atomic # 7 Polarization: -111.00 SS G_CDS: -5.03 Total: -116.03 kcal
Atomic # 8 Polarization: -22.48 SS G_CDS: 0.78 Total: -21.70 kcal
Atomic # 14 Polarization: 46.09 SS G_CDS: 2.03 Total: 48.11 kcal
Total: -72.59 5.09 -67.50 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001040524077.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 90.239 kcal
(2) G-P(sol) polarization free energy of solvation -72.594 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.645 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.091 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.503 kcal
(6) G-S(sol) free energy of system = (1) + (5) 22.736 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.92 seconds