Wall clock time and date at job start Wed Apr 1 2020 05:44:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50700 * 109.47249 * 2 1 4 4 N 1.30014 * 127.33481 * 269.95784 * 3 2 1 5 5 O 1.20663 * 112.30188 * 179.73369 * 4 3 2 6 6 C 1.33500 * 113.15534 * 0.50396 * 5 4 3 7 7 C 1.50697 * 126.82937 * 179.78019 * 6 5 4 8 8 C 1.37361 * 106.33692 * 359.51817 * 6 5 4 9 9 C 1.47405 * 128.55984 * 180.28263 * 8 6 5 10 10 O 1.21607 * 119.99933 * 89.97504 * 9 8 6 11 11 N 1.34773 * 119.99817 * 269.97216 * 9 8 6 12 12 C 1.47489 * 125.66357 * 359.69944 * 11 9 8 13 13 C 1.55239 * 104.79090 * 155.92876 * 12 11 9 14 14 C 1.54510 * 101.44450 * 36.65929 * 13 12 11 15 15 C 1.47171 * 125.66322 * 179.97438 * 11 9 8 16 16 C 1.52275 * 110.20126 * 83.42421 * 14 13 12 17 17 C 1.53318 * 109.41818 * 182.20233 * 16 14 13 18 18 N 1.46934 * 108.70611 * 306.49045 * 17 16 14 19 19 C 1.36933 * 120.56099 * 234.25756 * 18 17 16 20 20 H 1.07994 * 120.00157 * 27.91498 * 19 18 17 21 21 C 1.38820 * 119.99659 * 207.91819 * 19 18 17 22 22 N 1.31615 * 120.00156 * 17.44644 * 21 19 18 23 23 Si 1.86795 * 119.99550 * 197.45365 * 21 19 18 24 24 H 1.48504 * 109.47280 * 90.00095 * 23 21 19 25 25 H 1.48506 * 109.46717 * 209.99783 * 23 21 19 26 26 H 1.48495 * 109.47544 * 329.99394 * 23 21 19 27 27 C 1.46929 * 118.87058 * 54.23619 * 18 17 16 28 28 C 1.52273 * 110.20921 * 206.61170 * 14 13 12 29 29 H 1.09000 * 109.47106 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47138 * 300.00209 * 1 2 3 31 31 H 1.09000 * 109.47113 * 60.00192 * 1 2 3 32 32 H 1.09001 * 109.47616 * 239.99745 * 2 1 3 33 33 H 1.09000 * 109.47113 * 119.99808 * 2 1 3 34 34 H 1.09006 * 109.46668 * 269.68535 * 7 6 5 35 35 H 1.08994 * 109.47066 * 29.68262 * 7 6 5 36 36 H 1.08993 * 109.47003 * 149.68831 * 7 6 5 37 37 H 1.09003 * 110.34517 * 274.87017 * 12 11 9 38 38 H 1.08990 * 110.35294 * 37.15684 * 12 11 9 39 39 H 1.09008 * 111.19832 * 278.56218 * 13 12 11 40 40 H 1.09000 * 110.94422 * 154.64872 * 13 12 11 41 41 H 1.09003 * 109.91274 * 300.84407 * 15 11 9 42 42 H 1.09002 * 109.90748 * 62.10110 * 15 11 9 43 43 H 1.09003 * 109.47836 * 302.18042 * 16 14 13 44 44 H 1.08992 * 109.48037 * 62.21680 * 16 14 13 45 45 H 1.08996 * 109.59727 * 186.72795 * 17 16 14 46 46 H 1.09003 * 109.60105 * 66.25682 * 17 16 14 47 47 H 0.96991 * 120.00231 * 180.02562 * 22 21 19 48 48 H 1.09001 * 109.60141 * 185.99300 * 27 18 17 49 49 H 1.09001 * 109.73359 * 65.59685 * 27 18 17 50 50 H 1.08998 * 109.48206 * 297.77238 * 28 14 13 51 51 H 1.08993 * 109.48216 * 57.80197 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2959 2.1639 -1.0337 5 8 2.6792 3.2644 -0.7208 6 6 2.7472 3.4405 0.6008 7 6 3.1881 4.6866 1.3246 8 6 2.3297 2.2620 1.1696 9 6 2.2089 1.9238 2.5992 10 8 1.1664 2.1362 3.1883 11 7 3.2538 1.3793 3.2535 12 6 4.5681 1.0641 2.6633 13 6 5.5527 1.0678 3.8635 14 6 4.6772 0.4563 4.9801 15 6 3.2709 0.9953 4.6741 16 6 4.7004 -1.0638 4.8934 17 6 3.7837 -1.6501 5.9734 18 7 4.1742 -1.0935 7.2760 19 6 4.4746 -1.9209 8.3249 20 1 4.8649 -2.9102 8.1376 21 6 4.2773 -1.4879 9.6290 22 7 3.5009 -0.4524 9.8683 23 14 5.1140 -2.3748 11.0441 24 1 6.4388 -1.7555 11.3024 25 1 4.2717 -2.2679 12.2625 26 1 5.2966 -3.8060 10.6927 27 6 4.2374 0.3660 7.4337 28 6 5.1515 0.9391 6.3442 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 4.2632 4.6439 1.4995 35 1 2.9531 5.5613 0.7183 36 1 2.6671 4.7556 2.2795 37 1 4.5458 0.0818 2.1913 38 1 4.8512 1.8274 1.9387 39 1 5.8593 2.0823 4.1186 40 1 6.4196 0.4398 3.6583 41 1 3.0633 1.8658 5.2965 42 1 2.5280 0.2191 4.8577 43 1 4.3499 -1.3772 3.9099 44 1 5.7185 -1.4212 5.0475 45 1 3.8890 -2.7347 5.9930 46 1 2.7486 -1.3847 5.7580 47 1 3.3633 -0.1497 10.7794 48 1 4.6417 0.6105 8.4159 49 1 3.2385 0.7906 7.3334 50 1 6.1742 0.6023 6.5136 51 1 5.1172 2.0280 6.3765 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001040936037.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:44:02 Heat of formation + Delta-G solvation = 40.053481 kcal Electronic energy + Delta-G solvation = -32163.995834 eV Core-core repulsion = 28066.885903 eV Total energy + Delta-G solvation = -4097.109931 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -45.07973 -40.41158 -38.49606 -35.90408 -35.51746 -33.91117 -33.06375 -31.57635 -31.14107 -30.16666 -29.24101 -28.43865 -26.88854 -25.31729 -24.58601 -23.56148 -22.89732 -22.21039 -20.73737 -20.38892 -19.54494 -18.26390 -18.03942 -17.59758 -16.70634 -16.43266 -16.01421 -15.56114 -14.91515 -14.86426 -14.45433 -14.15591 -14.08264 -13.86542 -13.64885 -13.54323 -13.29040 -13.12872 -13.06039 -12.90021 -12.81180 -12.65627 -12.34455 -12.06395 -11.84307 -11.75114 -11.68971 -11.42852 -11.24363 -11.08482 -10.95826 -10.75503 -10.46854 -10.34567 -10.25994 -10.17657 -10.06856 -9.86985 -9.58576 -9.56589 -9.40050 -8.64521 -8.47001 -6.68083 -5.79868 -3.22398 1.08290 1.70122 2.32969 2.59474 3.04675 3.36643 3.43902 3.44983 3.80788 4.01139 4.36332 4.48411 4.58943 4.65916 4.79796 4.86643 4.95078 4.98659 5.02533 5.04876 5.12879 5.26530 5.26842 5.29021 5.37681 5.43168 5.54078 5.59827 5.61939 5.64715 5.67678 5.78565 5.86796 5.91413 5.97986 6.03822 6.07254 6.10305 6.21170 6.28733 6.46518 6.56319 6.60697 6.70011 6.79384 6.94111 7.32819 7.43458 7.64192 7.78592 8.00017 8.04350 8.43821 9.20100 9.83467 10.39859 11.28327 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019929 B = 0.002659 C = 0.002563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.643547 B =10527.176317 C =10923.052865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.047 4.047 3 C 0.060 3.940 4 N -0.356 5.356 5 O 0.095 5.905 6 C 0.013 3.987 7 C -0.079 4.079 8 C -0.239 4.239 9 C 0.609 3.391 10 O -0.524 6.524 11 N -0.604 5.604 12 C 0.102 3.898 13 C -0.126 4.126 14 C -0.055 4.055 15 C 0.118 3.882 16 C -0.119 4.119 17 C 0.143 3.857 18 N -0.590 5.590 19 C -0.253 4.253 20 H 0.065 0.935 21 C 0.003 3.997 22 N -0.901 5.901 23 Si 0.901 3.099 24 H -0.288 1.288 25 H -0.292 1.292 26 H -0.279 1.279 27 C 0.169 3.831 28 C -0.126 4.126 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.057 0.943 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.094 0.906 35 H 0.090 0.910 36 H 0.095 0.905 37 H 0.069 0.931 38 H 0.068 0.932 39 H 0.075 0.925 40 H 0.083 0.917 41 H 0.072 0.928 42 H 0.078 0.922 43 H 0.050 0.950 44 H 0.063 0.937 45 H 0.054 0.946 46 H 0.019 0.981 47 H 0.254 0.746 48 H 0.088 0.912 49 H 0.019 0.981 50 H 0.061 0.939 51 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.406 7.253 -20.026 21.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.085 4.085 3 C -0.103 4.103 4 N -0.061 5.061 5 O 0.033 5.967 6 C -0.050 4.050 7 C -0.136 4.136 8 C -0.246 4.246 9 C 0.395 3.605 10 O -0.400 6.400 11 N -0.337 5.337 12 C -0.021 4.021 13 C -0.164 4.164 14 C -0.055 4.055 15 C -0.003 4.003 16 C -0.158 4.158 17 C 0.017 3.983 18 N -0.313 5.313 19 C -0.383 4.383 20 H 0.083 0.917 21 C -0.196 4.196 22 N -0.545 5.545 23 Si 0.731 3.269 24 H -0.215 1.215 25 H -0.218 1.218 26 H -0.205 1.205 27 C 0.043 3.957 28 C -0.166 4.166 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.105 0.895 33 H 0.106 0.894 34 H 0.113 0.887 35 H 0.109 0.891 36 H 0.113 0.887 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.094 0.906 40 H 0.102 0.898 41 H 0.090 0.910 42 H 0.097 0.903 43 H 0.068 0.932 44 H 0.082 0.918 45 H 0.073 0.927 46 H 0.036 0.964 47 H 0.064 0.936 48 H 0.106 0.894 49 H 0.037 0.963 50 H 0.080 0.920 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.662 7.284 -20.878 22.175 hybrid contribution 0.398 -0.484 1.472 1.600 sum 2.061 6.800 -19.407 20.667 Atomic orbital electron populations 1.21730 0.93352 1.02703 1.02785 1.20004 0.97007 0.87388 1.04097 1.24750 1.00347 0.98736 0.86441 1.73596 1.16750 0.92476 1.23317 1.84526 1.63031 1.26567 1.22565 1.24589 0.99022 0.97694 0.83714 1.20469 1.02887 0.90730 0.99510 1.21894 1.12031 0.95420 0.95240 1.16454 0.82730 0.77699 0.83649 1.90853 1.27827 1.53457 1.67893 1.48547 1.12687 1.60463 1.11987 1.22401 0.82551 1.00532 0.96597 1.22933 0.97425 1.01877 0.94204 1.20980 0.92535 0.96272 0.95753 1.22213 0.98472 1.00380 0.79205 1.21926 1.01626 0.93299 0.98960 1.20964 0.94405 0.96696 0.86271 1.44029 1.78582 1.01577 1.07099 1.19186 1.35953 0.98301 0.84838 0.91702 1.25035 0.98181 0.98678 0.97702 1.70029 1.37031 1.28041 1.19436 0.86306 0.79082 0.79337 0.82135 1.21477 1.21798 1.20474 1.20828 0.95111 0.82968 0.96812 1.22110 1.01329 0.98660 0.94451 0.91270 0.91734 0.92414 0.89525 0.89400 0.88718 0.89077 0.88672 0.91271 0.91391 0.90649 0.89848 0.90970 0.90336 0.93169 0.91795 0.92732 0.96352 0.93612 0.89352 0.96259 0.92033 0.93050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 9.89 37.15 0.37 -1.09 16 2 C -0.05 -0.48 6.54 -27.89 -0.18 -0.66 16 3 C 0.06 0.72 6.84 -79.77 -0.55 0.18 16 4 N -0.36 -4.42 12.01 34.78 0.42 -4.00 16 5 O 0.09 1.07 11.06 18.63 0.21 1.27 16 6 C 0.01 0.14 7.55 -34.63 -0.26 -0.12 16 7 C -0.08 -0.54 10.33 36.00 0.37 -0.17 16 8 C -0.24 -3.02 5.14 -102.89 -0.53 -3.55 16 9 C 0.61 9.08 7.63 -12.53 -0.10 8.99 16 10 O -0.52 -9.85 17.44 5.27 0.09 -9.75 16 11 N -0.60 -8.26 3.33 -171.81 -0.57 -8.83 16 12 C 0.10 1.10 6.37 -2.31 -0.01 1.08 16 13 C -0.13 -1.41 6.00 -24.75 -0.15 -1.56 16 14 C -0.05 -0.80 0.53 -154.10 -0.08 -0.89 16 15 C 0.12 1.87 5.06 -3.32 -0.02 1.85 16 16 C -0.12 -1.86 4.78 -26.94 -0.13 -1.99 16 17 C 0.14 2.85 6.22 -3.64 -0.02 2.83 16 18 N -0.59 -14.13 2.98 -172.15 -0.51 -14.65 16 19 C -0.25 -6.75 9.57 -15.06 -0.14 -6.90 16 20 H 0.07 1.71 7.89 -52.49 -0.41 1.29 16 21 C 0.00 0.08 4.90 -17.43 -0.09 -0.01 16 22 N -0.90 -25.72 11.19 55.49 0.62 -25.10 16 23 Si 0.90 21.33 29.59 -169.99 -5.03 16.30 16 24 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 25 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 26 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 27 C 0.17 3.81 5.05 -3.64 -0.02 3.79 16 28 C -0.13 -2.17 4.71 -26.94 -0.13 -2.30 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.09 0.75 8.11 -51.93 -0.42 0.33 16 37 H 0.07 0.71 7.74 -51.93 -0.40 0.31 16 38 H 0.07 0.63 7.69 -51.93 -0.40 0.24 16 39 H 0.07 0.79 8.01 -51.92 -0.42 0.38 16 40 H 0.08 0.84 8.01 -51.93 -0.42 0.42 16 41 H 0.07 1.23 7.59 -51.93 -0.39 0.84 16 42 H 0.08 1.41 6.07 -51.93 -0.32 1.10 16 43 H 0.05 0.69 7.47 -51.93 -0.39 0.30 16 44 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 45 H 0.05 1.08 7.93 -51.93 -0.41 0.67 16 46 H 0.02 0.38 6.53 -51.93 -0.34 0.05 16 47 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 48 H 0.09 2.27 6.02 -51.93 -0.31 1.96 16 49 H 0.02 0.47 7.48 -51.93 -0.39 0.08 16 50 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 51 H 0.05 0.80 8.10 -51.93 -0.42 0.38 16 LS Contribution 402.26 15.07 6.06 6.06 Total: -1.00 -31.74 402.26 -8.76 -40.50 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: -8.38 Total: -1.30 kcal Atomic # 6 Polarization: 1.15 SS G_CDS: -1.66 Total: -0.51 kcal Atomic # 7 Polarization: -52.53 SS G_CDS: -0.05 Total: -52.57 kcal Atomic # 8 Polarization: -8.78 SS G_CDS: 0.30 Total: -8.48 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.03 Total: 16.30 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -31.74 -8.76 -40.50 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040936037.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.554 kcal (2) G-P(sol) polarization free energy of solvation -31.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.500 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds