Wall clock time and date at job start Wed Apr 1 2020 05:44:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50700 * 109.47249 * 2 1 4 4 N 1.30014 * 127.33481 * 269.95784 * 3 2 1 5 5 O 1.20663 * 112.30188 * 179.73369 * 4 3 2 6 6 C 1.33500 * 113.15534 * 0.50396 * 5 4 3 7 7 C 1.50697 * 126.82937 * 179.78019 * 6 5 4 8 8 C 1.37361 * 106.33692 * 359.51817 * 6 5 4 9 9 C 1.47405 * 128.55984 * 180.28263 * 8 6 5 10 10 O 1.21607 * 119.99933 * 89.97504 * 9 8 6 11 11 N 1.34773 * 119.99817 * 269.97216 * 9 8 6 12 12 C 1.47489 * 125.66357 * 359.69944 * 11 9 8 13 13 C 1.55239 * 104.79090 * 155.92876 * 12 11 9 14 14 C 1.54510 * 101.44450 * 36.65929 * 13 12 11 15 15 C 1.47171 * 125.66322 * 179.97438 * 11 9 8 16 16 C 1.52275 * 110.20126 * 83.42421 * 14 13 12 17 17 C 1.53318 * 109.41818 * 182.20233 * 16 14 13 18 18 N 1.46934 * 108.70611 * 306.49045 * 17 16 14 19 19 C 1.36933 * 120.56099 * 234.25756 * 18 17 16 20 20 H 1.07994 * 120.00157 * 27.91498 * 19 18 17 21 21 C 1.38820 * 119.99659 * 207.91819 * 19 18 17 22 22 N 1.31615 * 120.00156 * 17.44644 * 21 19 18 23 23 Si 1.86795 * 119.99550 * 197.45365 * 21 19 18 24 24 H 1.48504 * 109.47280 * 90.00095 * 23 21 19 25 25 H 1.48506 * 109.46717 * 209.99783 * 23 21 19 26 26 H 1.48495 * 109.47544 * 329.99394 * 23 21 19 27 27 C 1.46929 * 118.87058 * 54.23619 * 18 17 16 28 28 C 1.52273 * 110.20921 * 206.61170 * 14 13 12 29 29 H 1.09000 * 109.47106 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47138 * 300.00209 * 1 2 3 31 31 H 1.09000 * 109.47113 * 60.00192 * 1 2 3 32 32 H 1.09001 * 109.47616 * 239.99745 * 2 1 3 33 33 H 1.09000 * 109.47113 * 119.99808 * 2 1 3 34 34 H 1.09006 * 109.46668 * 269.68535 * 7 6 5 35 35 H 1.08994 * 109.47066 * 29.68262 * 7 6 5 36 36 H 1.08993 * 109.47003 * 149.68831 * 7 6 5 37 37 H 1.09003 * 110.34517 * 274.87017 * 12 11 9 38 38 H 1.08990 * 110.35294 * 37.15684 * 12 11 9 39 39 H 1.09008 * 111.19832 * 278.56218 * 13 12 11 40 40 H 1.09000 * 110.94422 * 154.64872 * 13 12 11 41 41 H 1.09003 * 109.91274 * 300.84407 * 15 11 9 42 42 H 1.09002 * 109.90748 * 62.10110 * 15 11 9 43 43 H 1.09003 * 109.47836 * 302.18042 * 16 14 13 44 44 H 1.08992 * 109.48037 * 62.21680 * 16 14 13 45 45 H 1.08996 * 109.59727 * 186.72795 * 17 16 14 46 46 H 1.09003 * 109.60105 * 66.25682 * 17 16 14 47 47 H 0.96991 * 120.00231 * 180.02562 * 22 21 19 48 48 H 1.09001 * 109.60141 * 185.99300 * 27 18 17 49 49 H 1.09001 * 109.73359 * 65.59685 * 27 18 17 50 50 H 1.08998 * 109.48206 * 297.77238 * 28 14 13 51 51 H 1.08993 * 109.48216 * 57.80197 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2959 2.1639 -1.0337 5 8 2.6792 3.2644 -0.7208 6 6 2.7472 3.4405 0.6008 7 6 3.1881 4.6866 1.3246 8 6 2.3297 2.2620 1.1696 9 6 2.2089 1.9238 2.5992 10 8 1.1664 2.1362 3.1883 11 7 3.2538 1.3793 3.2535 12 6 4.5681 1.0641 2.6633 13 6 5.5527 1.0678 3.8635 14 6 4.6772 0.4563 4.9801 15 6 3.2709 0.9953 4.6741 16 6 4.7004 -1.0638 4.8934 17 6 3.7837 -1.6501 5.9734 18 7 4.1742 -1.0935 7.2760 19 6 4.4746 -1.9209 8.3249 20 1 4.8649 -2.9102 8.1376 21 6 4.2773 -1.4879 9.6290 22 7 3.5009 -0.4524 9.8683 23 14 5.1140 -2.3748 11.0441 24 1 6.4388 -1.7555 11.3024 25 1 4.2717 -2.2679 12.2625 26 1 5.2966 -3.8060 10.6927 27 6 4.2374 0.3660 7.4337 28 6 5.1515 0.9391 6.3442 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 4.2632 4.6439 1.4995 35 1 2.9531 5.5613 0.7183 36 1 2.6671 4.7556 2.2795 37 1 4.5458 0.0818 2.1913 38 1 4.8512 1.8274 1.9387 39 1 5.8593 2.0823 4.1186 40 1 6.4196 0.4398 3.6583 41 1 3.0633 1.8658 5.2965 42 1 2.5280 0.2191 4.8577 43 1 4.3499 -1.3772 3.9099 44 1 5.7185 -1.4212 5.0475 45 1 3.8890 -2.7347 5.9930 46 1 2.7486 -1.3847 5.7580 47 1 3.3633 -0.1497 10.7794 48 1 4.6417 0.6105 8.4159 49 1 3.2385 0.7906 7.3334 50 1 6.1742 0.6023 6.5136 51 1 5.1172 2.0280 6.3765 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001040936037.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:44:01 Heat of formation + Delta-G solvation = 21.997608 kcal Electronic energy + Delta-G solvation = -32164.778795 eV Core-core repulsion = 28066.885903 eV Total energy + Delta-G solvation = -4097.892892 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -45.96717 -41.61403 -39.80707 -37.42997 -36.38365 -34.93970 -34.47423 -32.84199 -32.37211 -31.67392 -30.54952 -29.28304 -28.17707 -26.72099 -25.66959 -24.77236 -24.09135 -23.68298 -22.24349 -21.28549 -20.50521 -19.74920 -18.98734 -18.70326 -18.21484 -17.65411 -17.06712 -16.84646 -16.63385 -15.80305 -15.71894 -15.49169 -15.27317 -15.10824 -14.87056 -14.61780 -14.41402 -14.30901 -14.20049 -13.88009 -13.76070 -13.69836 -13.53648 -13.28618 -13.14842 -12.99342 -12.75540 -12.65012 -12.56908 -12.55177 -12.45784 -12.01852 -11.97242 -11.90944 -11.84782 -11.50027 -11.39402 -11.06367 -11.03931 -10.97519 -10.50465 -10.43053 -9.80862 -8.64928 -7.85299 -5.30804 0.24119 0.78981 1.20925 1.47756 1.48595 1.57546 1.65228 2.08505 2.52510 2.94653 3.19380 3.26819 3.38721 3.58513 3.70864 3.76646 3.79465 3.88640 4.06240 4.19648 4.22330 4.24458 4.27014 4.32984 4.38643 4.51883 4.57038 4.60557 4.64521 4.65247 4.72468 4.77596 4.79194 4.85980 4.87612 4.95348 4.97991 5.03746 5.05325 5.09720 5.12177 5.17374 5.26572 5.32239 5.39961 5.41579 5.55341 5.67089 5.80824 6.34379 6.40985 6.89789 7.14045 7.17056 7.89014 8.40055 9.20370 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019929 B = 0.002659 C = 0.002563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.643547 B =10527.176317 C =10923.052865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.048 4.048 3 C 0.057 3.943 4 N -0.369 5.369 5 O 0.097 5.903 6 C 0.035 3.965 7 C -0.081 4.081 8 C -0.267 4.267 9 C 0.613 3.387 10 O -0.575 6.575 11 N -0.598 5.598 12 C 0.101 3.899 13 C -0.112 4.112 14 C -0.051 4.051 15 C 0.125 3.875 16 C -0.105 4.105 17 C 0.138 3.862 18 N -0.608 5.608 19 C -0.260 4.260 20 H 0.067 0.933 21 C -0.052 4.052 22 N -0.936 5.936 23 Si 0.966 3.034 24 H -0.283 1.283 25 H -0.299 1.299 26 H -0.269 1.269 27 C 0.175 3.825 28 C -0.111 4.111 29 H 0.086 0.914 30 H 0.038 0.962 31 H 0.058 0.942 32 H 0.106 0.894 33 H 0.086 0.914 34 H 0.121 0.879 35 H 0.115 0.885 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.092 0.908 39 H 0.089 0.911 40 H 0.108 0.892 41 H 0.052 0.948 42 H 0.048 0.952 43 H 0.077 0.923 44 H 0.072 0.928 45 H 0.052 0.948 46 H 0.003 0.997 47 H 0.248 0.752 48 H 0.052 0.948 49 H -0.011 1.011 50 H 0.066 0.934 51 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.054 7.414 -22.667 24.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.086 4.086 3 C -0.105 4.105 4 N -0.076 5.076 5 O 0.036 5.964 6 C -0.028 4.028 7 C -0.137 4.137 8 C -0.275 4.275 9 C 0.401 3.599 10 O -0.455 6.455 11 N -0.330 5.330 12 C -0.020 4.020 13 C -0.149 4.149 14 C -0.052 4.052 15 C 0.003 3.997 16 C -0.143 4.143 17 C 0.012 3.988 18 N -0.331 5.331 19 C -0.390 4.390 20 H 0.085 0.915 21 C -0.247 4.247 22 N -0.582 5.582 23 Si 0.794 3.206 24 H -0.210 1.210 25 H -0.226 1.226 26 H -0.193 1.193 27 C 0.050 3.950 28 C -0.151 4.151 29 H 0.105 0.895 30 H 0.057 0.943 31 H 0.078 0.922 32 H 0.124 0.876 33 H 0.104 0.896 34 H 0.139 0.861 35 H 0.134 0.866 36 H 0.102 0.898 37 H 0.101 0.899 38 H 0.110 0.890 39 H 0.107 0.893 40 H 0.127 0.873 41 H 0.070 0.930 42 H 0.066 0.934 43 H 0.095 0.905 44 H 0.091 0.909 45 H 0.071 0.929 46 H 0.021 0.979 47 H 0.058 0.942 48 H 0.070 0.930 49 H 0.007 0.993 50 H 0.085 0.915 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.357 7.433 -23.573 25.098 hybrid contribution -0.510 -0.524 2.279 2.394 sum 3.846 6.908 -21.294 22.714 Atomic orbital electron populations 1.21696 0.93453 1.03516 1.01526 1.20100 0.96875 0.86732 1.04920 1.25012 0.99950 0.99391 0.86137 1.73590 1.17588 0.92895 1.23517 1.84519 1.62827 1.26204 1.22805 1.25142 0.96622 0.97801 0.83271 1.20702 1.04216 0.89969 0.98854 1.21680 1.14903 0.96948 0.93931 1.16718 0.82039 0.76765 0.84386 1.90823 1.29871 1.55614 1.69235 1.48561 1.13780 1.59583 1.11041 1.22644 0.80433 1.02141 0.96814 1.22903 0.97323 1.02798 0.91907 1.20873 0.92657 0.95887 0.95774 1.21937 0.98535 0.98655 0.80575 1.21764 1.00756 0.93515 0.98293 1.21116 0.94815 0.96819 0.86015 1.44306 1.78940 1.01922 1.07953 1.19532 1.34992 0.98665 0.85835 0.91493 1.25789 0.99088 0.99765 1.00071 1.70200 1.38820 1.29835 1.19369 0.85288 0.77814 0.78724 0.78753 1.20990 1.22584 1.19340 1.20615 0.94512 0.82762 0.97131 1.21891 0.99884 0.99415 0.93874 0.89469 0.94312 0.92240 0.87602 0.89556 0.86073 0.86596 0.89811 0.89947 0.88951 0.89260 0.87346 0.92976 0.93398 0.90479 0.90927 0.92934 0.97875 0.94245 0.92984 0.99329 0.91525 0.91353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.77 9.89 71.98 0.71 -2.06 16 2 C -0.05 -0.92 6.54 29.85 0.20 -0.72 16 3 C 0.06 1.31 6.84 45.16 0.31 1.62 16 4 N -0.37 -8.46 12.01 -44.77 -0.54 -9.00 16 5 O 0.10 1.95 11.06 76.92 0.85 2.80 16 6 C 0.04 0.66 7.55 25.48 0.19 0.85 16 7 C -0.08 -0.87 10.33 71.24 0.74 -0.13 16 8 C -0.27 -6.40 5.14 -18.74 -0.10 -6.49 16 9 C 0.61 18.16 7.63 86.66 0.66 18.82 16 10 O -0.58 -22.53 17.44 -4.05 -0.07 -22.60 16 11 N -0.60 -15.60 3.33 -815.73 -2.72 -18.32 16 12 C 0.10 1.78 6.37 86.96 0.55 2.34 16 13 C -0.11 -2.00 6.00 31.88 0.19 -1.81 16 14 C -0.05 -1.41 0.53 -51.92 -0.03 -1.44 16 15 C 0.13 3.98 5.06 86.48 0.44 4.42 16 16 C -0.10 -3.05 4.78 30.46 0.15 -2.90 16 17 C 0.14 5.54 6.22 86.40 0.54 6.07 16 18 N -0.61 -29.85 2.98 -698.57 -2.08 -31.93 16 19 C -0.26 -14.13 9.57 84.04 0.80 -13.32 16 20 H 0.07 3.54 7.89 -2.91 -0.02 3.51 16 21 C -0.05 -2.89 4.90 84.86 0.42 -2.47 16 22 N -0.94 -55.77 11.19 21.65 0.24 -55.53 16 23 Si 0.97 44.67 29.59 68.60 2.03 46.70 16 24 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 25 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 26 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 27 C 0.18 8.24 5.05 86.41 0.44 8.68 16 28 C -0.11 -3.75 4.71 30.46 0.14 -3.60 16 29 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.12 0.74 8.14 -2.38 -0.02 0.72 16 35 H 0.12 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.08 1.18 8.11 -2.39 -0.02 1.16 16 37 H 0.08 1.31 7.74 -2.39 -0.02 1.29 16 38 H 0.09 1.27 7.69 -2.39 -0.02 1.25 16 39 H 0.09 1.43 8.01 -2.38 -0.02 1.41 16 40 H 0.11 1.53 8.01 -2.39 -0.02 1.51 16 41 H 0.05 1.85 7.59 -2.39 -0.02 1.84 16 42 H 0.05 1.81 6.07 -2.39 -0.01 1.80 16 43 H 0.08 1.87 7.47 -2.39 -0.02 1.85 16 44 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 45 H 0.05 2.08 7.93 -2.39 -0.02 2.07 16 46 H 0.00 0.15 6.53 -2.39 -0.02 0.13 16 47 H 0.25 14.40 8.31 -92.72 -0.77 13.62 16 48 H 0.05 2.81 6.02 -2.39 -0.01 2.79 16 49 H -0.01 -0.59 7.48 -2.39 -0.02 -0.61 16 50 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 51 H 0.07 2.06 8.10 -2.39 -0.02 2.04 16 Total: -1.00 -73.77 402.26 4.98 -68.79 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: 0.92 Total: 11.25 kcal Atomic # 6 Polarization: 1.49 SS G_CDS: 6.35 Total: 7.84 kcal Atomic # 7 Polarization: -109.67 SS G_CDS: -5.10 Total: -114.77 kcal Atomic # 8 Polarization: -20.58 SS G_CDS: 0.78 Total: -19.80 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Total: -73.77 4.98 -68.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040936037.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.784 kcal (2) G-P(sol) polarization free energy of solvation -73.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.786 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds