Wall clock time and date at job start Wed Apr 1 2020 06:00:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50703 * 109.46705 * 2 1 4 4 O 1.34256 * 126.52307 * 270.15621 * 3 2 1 5 5 C 1.34052 * 108.22833 * 180.23190 * 4 3 2 6 6 N 1.29939 * 109.23999 * 359.77340 * 5 4 3 7 7 C 1.36064 * 108.47682 * 359.97438 * 6 5 4 8 8 C 1.47421 * 126.44903 * 179.97438 * 7 6 5 9 9 O 1.21605 * 120.00310 * 186.06492 * 8 7 6 10 10 N 1.34777 * 119.99674 * 6.07246 * 8 7 6 11 11 C 1.43439 * 120.53723 * 356.15500 * 10 8 7 12 12 C 1.54899 * 116.06168 * 271.62550 * 11 10 8 13 13 C 1.54883 * 110.15588 * 318.66963 * 12 11 10 14 14 C 1.50006 * 110.87298 * 321.08526 * 13 12 11 15 15 C 1.52652 * 105.55633 * 97.57972 * 14 13 12 16 16 C 1.55392 * 108.42257 * 145.55248 * 15 14 13 17 17 C 1.54289 * 102.94556 * 210.14621 * 16 15 14 18 18 N 1.47004 * 107.26380 * 22.40726 * 17 16 15 19 19 C 1.36938 * 125.66015 * 180.88740 * 18 17 16 20 20 H 1.08002 * 120.00353 * 180.02562 * 19 18 17 21 21 C 1.38813 * 120.00011 * 0.02562 * 19 18 17 22 22 N 1.31621 * 119.99927 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00007 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.46931 * 60.00555 * 23 21 19 25 25 H 1.48508 * 109.46920 * 179.97438 * 23 21 19 26 26 H 1.48495 * 109.47364 * 300.00456 * 23 21 19 27 27 C 1.47380 * 108.68000 * 1.15039 * 18 17 16 28 28 C 1.46352 * 114.33173 * 270.89896 * 15 14 13 29 29 H 1.09004 * 109.47108 * 180.02562 * 1 2 3 30 30 H 1.08991 * 109.47708 * 300.00278 * 1 2 3 31 31 H 1.09007 * 109.46689 * 60.00551 * 1 2 3 32 32 H 1.08991 * 109.47209 * 239.99897 * 2 1 3 33 33 H 1.08995 * 109.46545 * 119.99119 * 2 1 3 34 34 H 1.07992 * 125.38107 * 179.72681 * 5 4 3 35 35 H 1.08999 * 108.15960 * 33.34126 * 11 10 8 36 36 H 1.08997 * 108.16268 * 149.91417 * 11 10 8 37 37 H 1.09002 * 109.35804 * 78.88008 * 12 11 10 38 38 H 1.09001 * 109.35892 * 198.59910 * 12 11 10 39 39 H 1.09007 * 109.19855 * 81.44524 * 13 12 11 40 40 H 1.09003 * 109.20170 * 200.77188 * 13 12 11 41 41 H 1.08999 * 110.22474 * 338.56771 * 14 13 12 42 42 H 1.09010 * 110.22389 * 216.58456 * 14 13 12 43 43 H 1.08999 * 110.71291 * 91.78377 * 16 15 14 44 44 H 1.08996 * 110.72040 * 328.51189 * 16 15 14 45 45 H 1.09000 * 109.88804 * 262.99055 * 17 16 15 46 46 H 1.09003 * 109.88256 * 141.81931 * 17 16 15 47 47 H 0.97005 * 120.00071 * 179.97438 * 22 21 19 48 48 H 1.09003 * 110.37361 * 94.35172 * 27 18 17 49 49 H 1.09002 * 110.37199 * 216.68289 * 27 18 17 50 50 H 1.09002 * 109.83975 * 177.71535 * 28 15 14 51 51 H 1.08999 * 109.83899 * 298.67717 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 2.2958 2.1752 -1.0789 5 6 2.7259 3.3731 -0.6581 6 7 2.7348 3.3927 0.6411 7 6 2.3018 2.1847 1.0936 8 6 2.1582 1.7777 2.5032 9 8 1.8647 0.6300 2.7778 10 7 2.3522 2.6776 3.4875 11 6 2.7784 4.0125 3.1810 12 6 4.3090 4.2367 3.1013 13 6 5.0209 3.4695 4.2430 14 6 4.2265 3.5437 5.5133 15 6 3.4331 2.2411 5.5766 16 6 3.3127 1.8112 7.0650 17 6 3.2486 0.2722 6.9762 18 7 3.8545 -0.1164 5.6945 19 6 3.9773 -1.3970 5.2252 20 1 4.4404 -1.5789 4.2666 21 6 3.5064 -2.4615 5.9815 22 7 2.9415 -2.2399 7.1495 23 14 3.6731 -4.2083 5.3411 24 1 5.1091 -4.5241 5.1325 25 1 3.0972 -5.1551 6.3297 26 1 2.9463 -4.3346 4.0523 27 6 4.3138 1.1004 5.0012 28 6 2.1252 2.2993 4.9224 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8898 31 1 -0.3633 0.5138 -0.8901 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5137 0.8900 34 1 3.0194 4.1922 -1.2978 35 1 2.3430 4.2966 2.2230 36 1 2.3763 4.6808 3.9424 37 1 4.6772 3.8776 2.1403 38 1 4.5236 5.3012 3.1955 39 1 5.1385 2.4250 3.9542 40 1 6.0048 3.9078 4.4103 41 1 3.5487 4.3968 5.4846 42 1 4.8943 3.6201 6.3715 43 1 2.4007 2.2102 7.5089 44 1 4.1889 2.1287 7.6302 45 1 2.2104 -0.0582 7.0107 46 1 3.8083 -0.1703 7.8002 47 1 2.6120 -2.9837 7.6779 48 1 5.3656 1.2867 5.2184 49 1 4.1583 1.0063 3.9265 50 1 1.6412 1.3241 4.9755 51 1 1.5016 3.0496 5.4084 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001045923138.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:00:53 Heat of formation + Delta-G solvation = 21.290672 kcal Electronic energy + Delta-G solvation = -33706.102868 eV Core-core repulsion = 29608.179321 eV Total energy + Delta-G solvation = -4097.923547 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -44.44183 -41.87103 -39.67685 -37.49019 -35.94444 -35.17838 -34.85675 -34.16615 -32.24784 -30.54254 -30.30621 -28.07224 -27.52618 -26.34946 -25.52948 -24.83744 -24.30239 -22.87183 -22.19582 -21.41769 -20.19849 -19.58744 -18.92461 -18.26167 -17.86043 -17.41942 -17.06108 -16.73494 -16.62947 -16.03426 -15.92604 -15.53712 -15.47525 -15.16713 -14.89015 -14.72317 -14.53355 -14.24848 -14.08244 -13.70329 -13.61979 -13.50711 -13.22671 -13.10158 -12.89389 -12.76538 -12.66183 -12.50187 -12.48912 -12.27894 -12.13050 -12.01914 -11.91374 -11.78156 -11.47719 -11.41907 -11.18864 -11.03207 -10.94745 -10.65738 -10.60149 -9.99963 -9.46913 -8.81247 -7.80993 -5.13207 0.09263 1.14104 1.38690 1.43694 1.49369 1.56562 2.00718 2.31196 2.50360 3.12764 3.36195 3.52500 3.58888 3.73695 3.81436 3.93221 4.02163 4.06571 4.18661 4.22957 4.23982 4.28738 4.32117 4.41548 4.55145 4.60914 4.63683 4.70788 4.73322 4.82741 4.89235 4.89730 4.92754 4.96622 5.01798 5.06419 5.11468 5.16299 5.18788 5.19619 5.34610 5.39902 5.42770 5.49656 5.56430 5.64171 5.70506 5.75480 5.82627 6.24797 6.40540 6.63805 7.15954 7.22546 7.84181 8.48348 9.29073 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009730 B = 0.005075 C = 0.003685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2877.106863 B = 5515.785703 C = 7597.288665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.051 4.051 3 C 0.039 3.961 4 O -0.197 6.197 5 C 0.191 3.809 6 N -0.472 5.472 7 C -0.089 4.089 8 C 0.581 3.419 9 O -0.557 6.557 10 N -0.584 5.584 11 C 0.093 3.907 12 C -0.111 4.111 13 C -0.142 4.142 14 C -0.090 4.090 15 C -0.079 4.079 16 C -0.121 4.121 17 C 0.186 3.814 18 N -0.618 5.618 19 C -0.224 4.224 20 H 0.061 0.939 21 C -0.065 4.065 22 N -0.950 5.950 23 Si 0.969 3.031 24 H -0.278 1.278 25 H -0.288 1.288 26 H -0.284 1.284 27 C 0.161 3.839 28 C 0.146 3.854 29 H 0.079 0.921 30 H 0.038 0.962 31 H 0.074 0.926 32 H 0.106 0.894 33 H 0.085 0.915 34 H 0.308 0.692 35 H 0.109 0.891 36 H 0.081 0.919 37 H 0.051 0.949 38 H 0.095 0.905 39 H 0.046 0.954 40 H 0.065 0.935 41 H 0.092 0.908 42 H 0.073 0.927 43 H 0.086 0.914 44 H 0.078 0.922 45 H 0.005 0.995 46 H 0.002 0.998 47 H 0.244 0.756 48 H 0.013 0.987 49 H 0.019 0.981 50 H 0.055 0.945 51 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.784 19.744 -15.502 25.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.088 4.088 3 C -0.018 4.018 4 O -0.084 6.084 5 C -0.037 4.037 6 N -0.201 5.201 7 C -0.207 4.207 8 C 0.369 3.631 9 O -0.436 6.436 10 N -0.314 5.314 11 C -0.031 4.031 12 C -0.150 4.150 13 C -0.180 4.180 14 C -0.128 4.128 15 C -0.081 4.081 16 C -0.160 4.160 17 C 0.061 3.939 18 N -0.343 5.343 19 C -0.354 4.354 20 H 0.079 0.921 21 C -0.258 4.258 22 N -0.600 5.600 23 Si 0.798 3.202 24 H -0.204 1.204 25 H -0.214 1.214 26 H -0.211 1.211 27 C 0.036 3.964 28 C 0.026 3.974 29 H 0.098 0.902 30 H 0.057 0.943 31 H 0.093 0.907 32 H 0.125 0.875 33 H 0.104 0.896 34 H 0.322 0.678 35 H 0.127 0.873 36 H 0.100 0.900 37 H 0.070 0.930 38 H 0.114 0.886 39 H 0.065 0.935 40 H 0.084 0.916 41 H 0.111 0.889 42 H 0.092 0.908 43 H 0.104 0.896 44 H 0.096 0.904 45 H 0.023 0.977 46 H 0.020 0.980 47 H 0.054 0.946 48 H 0.030 0.970 49 H 0.037 0.963 50 H 0.074 0.926 51 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -1.813 19.455 -14.927 24.588 hybrid contribution 0.107 -2.163 -0.308 2.187 sum -1.706 17.292 -15.235 23.109 Atomic orbital electron populations 1.21631 0.92213 1.03473 1.01849 1.20368 0.97851 0.85515 1.05115 1.23796 0.98753 0.95655 0.83586 1.84385 1.63779 1.24845 1.35374 1.29401 0.95859 0.87047 0.91380 1.70815 1.18659 1.19775 1.10831 1.21324 1.11806 0.92946 0.94648 1.17301 0.77294 0.84595 0.83877 1.90903 1.49798 1.19481 1.83389 1.47789 1.65051 1.13036 1.05558 1.21700 0.96178 0.81071 1.04118 1.22451 0.94216 1.00924 0.97384 1.21850 0.99402 1.00911 0.95837 1.21108 0.98530 0.95150 0.97972 1.20837 0.95861 0.96118 0.95289 1.23027 1.02616 0.95102 0.95213 1.20886 0.95056 0.91067 0.86888 1.44704 1.69066 1.01515 1.19064 1.19145 1.31890 0.83361 1.00961 0.92113 1.25488 1.01532 1.01346 0.97388 1.70172 1.46515 1.29980 1.13343 0.85286 0.77749 0.80152 0.77020 1.20373 1.21414 1.21069 1.21832 0.94523 0.85960 0.94074 1.20716 0.96261 1.01294 0.79154 0.90208 0.94295 0.90679 0.87522 0.89631 0.67786 0.87340 0.90036 0.93023 0.88611 0.93540 0.91590 0.88926 0.90794 0.89588 0.90367 0.97699 0.97952 0.94639 0.96976 0.96274 0.92645 0.87905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.14 9.89 71.98 0.71 -2.43 16 2 C -0.05 -1.36 5.99 29.85 0.18 -1.18 16 3 C 0.04 1.05 6.69 25.19 0.17 1.22 16 4 O -0.20 -3.92 10.73 0.38 0.00 -3.91 16 5 C 0.19 2.76 13.19 130.52 1.72 4.49 16 6 N -0.47 -10.54 6.96 -305.15 -2.12 -12.67 16 7 C -0.09 -2.69 6.65 40.41 0.27 -2.42 16 8 C 0.58 21.86 6.62 86.66 0.57 22.43 16 9 O -0.56 -26.27 14.01 -4.05 -0.06 -26.33 16 10 N -0.58 -18.82 2.14 -831.50 -1.78 -20.60 16 11 C 0.09 2.17 4.43 87.59 0.39 2.56 16 12 C -0.11 -2.40 6.26 31.89 0.20 -2.20 16 13 C -0.14 -3.74 5.18 30.27 0.16 -3.59 16 14 C -0.09 -2.29 4.99 29.52 0.15 -2.15 16 15 C -0.08 -2.76 0.49 -52.78 -0.03 -2.79 16 16 C -0.12 -4.50 5.85 31.85 0.19 -4.31 16 17 C 0.19 9.81 5.01 86.72 0.43 10.24 16 18 N -0.62 -34.76 3.34 -691.67 -2.31 -37.08 16 19 C -0.22 -13.98 10.28 84.03 0.86 -13.12 16 20 H 0.06 3.80 7.83 -2.91 -0.02 3.78 16 21 C -0.07 -4.04 5.49 84.86 0.47 -3.58 16 22 N -0.95 -61.10 10.31 21.65 0.22 -60.88 16 23 Si 0.97 50.11 29.55 68.60 2.03 52.14 16 24 H -0.28 -13.76 7.11 99.48 0.71 -13.06 16 25 H -0.29 -14.64 7.11 99.48 0.71 -13.93 16 26 H -0.28 -14.48 7.11 99.48 0.71 -13.78 16 27 C 0.16 7.35 4.24 86.96 0.37 7.72 16 28 C 0.15 5.12 4.69 83.62 0.39 5.51 16 29 H 0.08 1.70 8.14 -2.38 -0.02 1.68 16 30 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.07 1.39 8.14 -2.38 -0.02 1.37 16 32 H 0.11 2.22 8.14 -2.39 -0.02 2.20 16 33 H 0.09 2.99 6.38 -2.39 -0.02 2.98 16 34 H 0.31 0.31 8.06 -2.91 -0.02 0.28 16 35 H 0.11 2.49 4.98 -2.39 -0.01 2.47 16 36 H 0.08 1.55 6.90 -2.39 -0.02 1.53 16 37 H 0.05 1.24 7.30 -2.39 -0.02 1.23 16 38 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.05 1.61 4.02 -2.38 -0.01 1.60 16 40 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 41 H 0.09 1.85 6.31 -2.39 -0.02 1.84 16 42 H 0.07 1.79 7.36 -2.38 -0.02 1.78 16 43 H 0.09 2.75 8.04 -2.39 -0.02 2.73 16 44 H 0.08 2.65 7.44 -2.39 -0.02 2.63 16 45 H 0.00 0.28 7.39 -2.39 -0.02 0.27 16 46 H 0.00 0.13 7.50 -2.39 -0.02 0.12 16 47 H 0.24 15.27 8.31 -92.70 -0.77 14.50 16 48 H 0.01 0.58 7.00 -2.39 -0.02 0.56 16 49 H 0.02 0.95 5.55 -2.39 -0.01 0.94 16 50 H 0.05 2.55 6.82 -2.39 -0.02 2.53 16 51 H 0.10 2.83 8.12 -2.39 -0.02 2.81 16 Total: -1.00 -83.94 378.49 4.13 -79.81 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: 0.95 Total: 13.11 kcal Atomic # 6 Polarization: 9.20 SS G_CDS: 7.20 Total: 16.40 kcal Atomic # 7 Polarization: -125.22 SS G_CDS: -6.00 Total: -131.22 kcal Atomic # 8 Polarization: -30.19 SS G_CDS: -0.05 Total: -30.24 kcal Atomic # 14 Polarization: 50.11 SS G_CDS: 2.03 Total: 52.14 kcal Total: -83.94 4.13 -79.81 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045923138.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.102 kcal (2) G-P(sol) polarization free energy of solvation -83.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.811 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds