Wall clock time and date at job start Wed Apr 1 2020 06:00:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50707 * 109.46684 * 2 1 4 4 O 1.34257 * 126.52286 * 270.02240 * 3 2 1 5 5 C 1.34049 * 108.22148 * 179.97438 * 4 3 2 6 6 N 1.29939 * 109.24691 * 359.72318 * 5 4 3 7 7 C 1.36068 * 108.47325 * 0.44463 * 6 5 4 8 8 C 1.47424 * 126.44442 * 179.82522 * 7 6 5 9 9 O 1.21614 * 119.99561 * 185.63186 * 8 7 6 10 10 N 1.34765 * 120.00048 * 5.63155 * 8 7 6 11 11 C 1.44572 * 118.73406 * 357.47174 * 10 8 7 12 12 C 1.54735 * 109.59654 * 270.63648 * 11 10 8 13 13 C 1.47049 * 110.56351 * 288.35218 * 12 11 10 14 14 C 1.52837 * 114.33877 * 62.91056 * 13 12 11 15 15 C 1.50754 * 109.19444 * 275.78303 * 14 13 12 16 16 C 1.53909 * 111.08507 * 213.32690 * 15 14 13 17 17 C 1.54479 * 104.83694 * 119.97447 * 16 15 14 18 18 N 1.48182 * 104.63053 * 23.81288 * 17 16 15 19 19 C 1.36930 * 127.80744 * 140.66905 * 18 17 16 20 20 H 1.07998 * 120.00220 * 189.66716 * 19 18 17 21 21 C 1.38819 * 120.00272 * 9.66163 * 19 18 17 22 22 N 1.31615 * 119.99349 * 8.34601 * 21 19 18 23 23 Si 1.86796 * 120.00309 * 188.34561 * 21 19 18 24 24 H 1.48503 * 109.47127 * 89.99948 * 23 21 19 25 25 H 1.48496 * 109.47467 * 210.00274 * 23 21 19 26 26 H 1.48499 * 109.46956 * 330.00653 * 23 21 19 27 27 C 1.48221 * 104.38463 * 320.64606 * 18 17 16 28 28 C 1.47613 * 118.72856 * 177.45196 * 10 8 7 29 29 H 1.08996 * 109.47545 * 60.00326 * 1 2 3 30 30 H 1.09005 * 109.46469 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47409 * 299.99751 * 1 2 3 32 32 H 1.09001 * 109.47670 * 240.00107 * 2 1 3 33 33 H 1.08996 * 109.47545 * 119.99674 * 2 1 3 34 34 H 1.07999 * 125.37597 * 180.02562 * 5 4 3 35 35 H 1.09007 * 109.45009 * 150.59652 * 11 10 8 36 36 H 1.09001 * 109.42281 * 30.66615 * 11 10 8 37 37 H 1.09009 * 109.25667 * 168.07174 * 12 11 10 38 38 H 1.09001 * 109.25667 * 48.63703 * 12 11 10 39 39 H 1.09005 * 108.50968 * 184.16700 * 13 12 11 40 40 H 1.09000 * 108.51208 * 301.65133 * 13 12 11 41 41 H 1.08998 * 109.51770 * 35.68939 * 14 13 12 42 42 H 1.08996 * 109.52163 * 155.85834 * 14 13 12 43 43 H 1.08994 * 110.36901 * 238.82345 * 16 15 14 44 44 H 1.09007 * 110.36655 * 1.13858 * 16 15 14 45 45 H 1.09002 * 110.40354 * 142.59750 * 17 16 15 46 46 H 1.08995 * 110.41129 * 265.02163 * 17 16 15 47 47 H 0.97007 * 119.99671 * 179.97438 * 22 21 19 48 48 H 1.08995 * 110.42625 * 280.46607 * 27 18 17 49 49 H 1.09003 * 110.42138 * 157.99513 * 27 18 17 50 50 H 1.09004 * 108.96883 * 258.63871 * 28 10 8 51 51 H 1.08996 * 108.97517 * 17.33003 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 8 2.2981 2.1744 -1.0789 5 6 2.7219 3.3745 -0.6580 6 7 2.7236 3.3966 0.6412 7 6 2.3021 2.1846 1.0936 8 6 2.1586 1.7775 2.5033 9 8 1.8687 0.6288 2.7779 10 7 2.3486 2.6783 3.4875 11 6 2.7463 4.0221 3.1324 12 6 4.2902 4.1089 3.0771 13 6 4.8599 4.0451 4.4313 14 6 4.5867 2.7344 5.1685 15 6 3.2303 2.8071 5.8224 16 6 3.2110 2.0218 7.1460 17 6 2.8545 3.0705 8.2229 18 7 2.1424 4.1391 7.4835 19 6 1.0481 4.8550 7.8898 20 1 0.5331 5.4972 7.1908 21 6 0.6007 4.7551 9.2001 22 7 1.3178 4.1059 10.0925 23 14 -1.0191 5.5420 9.6965 24 1 -2.1221 4.5658 9.5077 25 1 -0.9556 5.9473 11.1237 26 1 -1.2672 6.7385 8.8527 27 6 2.8827 4.2583 6.2049 28 6 2.1421 2.2549 4.8864 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3632 -1.0278 0.0005 31 1 -0.3634 0.5137 0.8899 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5137 0.8900 34 1 3.0111 4.1951 -1.2977 35 1 2.3699 4.7213 3.8792 36 1 2.3331 4.2764 2.1563 37 1 4.5809 5.0493 2.6087 38 1 4.6760 3.2788 2.4852 39 1 5.9388 4.1834 4.3597 40 1 4.4478 4.8652 5.0191 41 1 4.6050 1.9070 4.4592 42 1 5.3505 2.5789 5.9303 43 1 2.4526 1.2398 7.1122 44 1 4.1923 1.5913 7.3460 45 1 2.2029 2.6324 8.9789 46 1 3.7601 3.4655 8.6833 47 1 1.0054 4.0364 11.0083 48 1 3.7919 4.8429 6.3449 49 1 2.2515 4.7122 5.4409 50 1 1.1693 2.6117 5.2247 51 1 2.1541 1.1659 4.9326 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001045923139.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:00:56 Heat of formation + Delta-G solvation = 18.736294 kcal Electronic energy + Delta-G solvation = -32832.328841 eV Core-core repulsion = 28734.294528 eV Total energy + Delta-G solvation = -4098.034313 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -44.45551 -41.76809 -39.84846 -37.50738 -35.96460 -35.19758 -34.86129 -34.38625 -32.41354 -30.51424 -30.16774 -28.34412 -27.61509 -26.51697 -25.49185 -24.64584 -23.94850 -23.15662 -22.24326 -21.50299 -20.43945 -19.50219 -18.80513 -18.45035 -17.87726 -17.48724 -17.22123 -16.81021 -16.52879 -16.22522 -15.86710 -15.72436 -15.39390 -15.10440 -15.02052 -14.86725 -14.56535 -14.48169 -14.13502 -13.76628 -13.58529 -13.42827 -13.21096 -13.11341 -12.89370 -12.70308 -12.64945 -12.56597 -12.36853 -12.30882 -12.06463 -12.04567 -11.91549 -11.83458 -11.57886 -11.46610 -11.14233 -11.09895 -11.03670 -10.68223 -10.64142 -10.02486 -9.51810 -8.86003 -7.83789 -5.19986 0.07074 1.10037 1.45566 1.47731 1.55692 1.58569 1.98744 2.21629 2.49751 3.10090 3.31309 3.54454 3.60232 3.65416 3.78928 3.81742 4.01388 4.08759 4.09832 4.15084 4.22240 4.26953 4.31572 4.45856 4.53970 4.57063 4.65382 4.67547 4.73976 4.78491 4.82521 4.86532 4.89329 4.93546 5.03988 5.09512 5.11065 5.15979 5.20797 5.24393 5.30588 5.37330 5.39018 5.47099 5.49127 5.58041 5.63132 5.70477 5.80507 6.26057 6.31980 6.56764 7.05696 7.06324 7.74161 8.51022 9.26321 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014644 B = 0.003141 C = 0.002976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1911.559047 B = 8913.360624 C = 9406.185847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.048 4.048 3 C 0.046 3.954 4 O -0.196 6.196 5 C 0.194 3.806 6 N -0.479 5.479 7 C -0.093 4.093 8 C 0.585 3.415 9 O -0.570 6.570 10 N -0.579 5.579 11 C 0.083 3.917 12 C -0.100 4.100 13 C -0.138 4.138 14 C -0.088 4.088 15 C -0.068 4.068 16 C -0.121 4.121 17 C 0.153 3.847 18 N -0.621 5.621 19 C -0.230 4.230 20 H 0.079 0.921 21 C -0.065 4.065 22 N -0.948 5.948 23 Si 0.974 3.026 24 H -0.289 1.289 25 H -0.294 1.294 26 H -0.268 1.268 27 C 0.135 3.865 28 C 0.140 3.860 29 H 0.067 0.933 30 H 0.086 0.914 31 H 0.036 0.964 32 H 0.111 0.889 33 H 0.099 0.901 34 H 0.304 0.696 35 H 0.066 0.934 36 H 0.128 0.872 37 H 0.089 0.911 38 H 0.049 0.951 39 H 0.069 0.931 40 H 0.070 0.930 41 H 0.053 0.947 42 H 0.068 0.932 43 H 0.053 0.947 44 H 0.080 0.920 45 H 0.064 0.936 46 H -0.003 1.003 47 H 0.247 0.753 48 H 0.038 0.962 49 H 0.054 0.946 50 H 0.044 0.956 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.714 -3.628 -26.315 27.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.085 4.085 3 C -0.011 4.011 4 O -0.083 6.083 5 C -0.034 4.034 6 N -0.207 5.207 7 C -0.211 4.211 8 C 0.374 3.626 9 O -0.450 6.450 10 N -0.308 5.308 11 C -0.039 4.039 12 C -0.139 4.139 13 C -0.175 4.175 14 C -0.126 4.126 15 C -0.070 4.070 16 C -0.160 4.160 17 C 0.027 3.973 18 N -0.345 5.345 19 C -0.359 4.359 20 H 0.097 0.903 21 C -0.258 4.258 22 N -0.597 5.597 23 Si 0.803 3.197 24 H -0.216 1.216 25 H -0.221 1.221 26 H -0.193 1.193 27 C 0.011 3.989 28 C 0.018 3.982 29 H 0.086 0.914 30 H 0.105 0.895 31 H 0.055 0.945 32 H 0.129 0.871 33 H 0.117 0.883 34 H 0.319 0.681 35 H 0.084 0.916 36 H 0.145 0.855 37 H 0.108 0.892 38 H 0.068 0.932 39 H 0.087 0.913 40 H 0.088 0.912 41 H 0.072 0.928 42 H 0.086 0.914 43 H 0.072 0.928 44 H 0.099 0.901 45 H 0.082 0.918 46 H 0.015 0.985 47 H 0.057 0.943 48 H 0.055 0.945 49 H 0.072 0.928 50 H 0.062 0.938 51 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 5.578 -3.582 -25.583 26.428 hybrid contribution -0.959 0.033 0.777 1.235 sum 4.619 -3.549 -24.806 25.481 Atomic orbital electron populations 1.21674 0.92721 1.03706 1.01608 1.20436 0.97302 0.84933 1.05841 1.23953 0.97953 0.95978 0.83251 1.84407 1.63658 1.24714 1.35501 1.29359 0.95808 0.86966 0.91277 1.70820 1.19087 1.19939 1.10899 1.21207 1.12579 0.92826 0.94511 1.17291 0.76862 0.84561 0.83877 1.90723 1.51137 1.19495 1.83682 1.47573 1.65636 1.12190 1.05435 1.22519 0.96478 0.81340 1.03614 1.20853 0.94259 1.02552 0.96187 1.20798 1.01557 0.98005 0.97134 1.21046 0.94382 0.98322 0.98825 1.21249 0.95308 0.96416 0.94051 1.22711 1.01152 0.97633 0.94545 1.21568 0.93837 0.88050 0.93846 1.45322 1.31561 1.41120 1.16489 1.19361 1.02350 1.19978 0.94198 0.90334 1.25579 1.02339 1.02241 0.95643 1.70053 1.38890 1.48362 1.02395 0.85135 0.79525 0.78151 0.76905 1.21617 1.22104 1.19305 1.22308 0.94397 0.94315 0.87888 1.21766 0.97484 0.99652 0.79262 0.91416 0.89537 0.94525 0.87106 0.88258 0.68113 0.91607 0.85524 0.89227 0.93210 0.91267 0.91164 0.92803 0.91377 0.92776 0.90121 0.91787 0.98488 0.94349 0.94484 0.92832 0.93780 0.90607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.33 9.89 71.98 0.71 -1.62 16 2 C -0.05 -0.85 6.00 29.85 0.18 -0.67 16 3 C 0.05 0.95 6.69 25.19 0.17 1.12 16 4 O -0.20 -3.03 10.73 0.39 0.00 -3.02 16 5 C 0.19 2.27 13.19 130.52 1.72 3.99 16 6 N -0.48 -9.50 7.14 -305.14 -2.18 -11.68 16 7 C -0.09 -2.35 6.63 40.41 0.27 -2.08 16 8 C 0.59 18.55 7.62 86.66 0.66 19.21 16 9 O -0.57 -20.47 14.06 -4.08 -0.06 -20.53 16 10 N -0.58 -18.30 2.28 -822.60 -1.88 -20.17 16 11 C 0.08 2.24 4.92 87.33 0.43 2.67 16 12 C -0.10 -2.33 5.17 29.34 0.15 -2.18 16 13 C -0.14 -3.53 4.94 28.69 0.14 -3.39 16 14 C -0.09 -2.60 4.90 29.81 0.15 -2.45 16 15 C -0.07 -2.42 0.68 -51.98 -0.04 -2.46 16 16 C -0.12 -4.76 6.21 31.40 0.20 -4.57 16 17 C 0.15 7.65 6.06 86.56 0.52 8.18 16 18 N -0.62 -32.19 3.39 -688.34 -2.33 -34.52 16 19 C -0.23 -13.00 10.38 84.04 0.87 -12.13 16 20 H 0.08 4.27 7.84 -2.91 -0.02 4.25 16 21 C -0.07 -3.74 5.44 84.86 0.46 -3.28 16 22 N -0.95 -57.57 10.54 21.65 0.23 -57.34 16 23 Si 0.97 46.38 29.56 68.60 2.03 48.41 16 24 H -0.29 -13.65 7.11 99.48 0.71 -12.95 16 25 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 26 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 27 C 0.14 5.54 4.42 86.41 0.38 5.92 16 28 C 0.14 5.10 4.70 86.43 0.41 5.51 16 29 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.09 1.16 8.14 -2.38 -0.02 1.14 16 31 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.10 2.21 6.38 -2.39 -0.02 2.19 16 34 H 0.30 -0.21 8.06 -2.91 -0.02 -0.24 16 35 H 0.07 1.97 5.11 -2.38 -0.01 1.95 16 36 H 0.13 3.20 4.72 -3.54 -0.02 3.18 16 37 H 0.09 1.71 8.14 -2.38 -0.02 1.69 16 38 H 0.05 1.22 8.02 -2.39 -0.02 1.20 16 39 H 0.07 1.54 8.14 -2.38 -0.02 1.52 16 40 H 0.07 2.00 4.57 -2.39 -0.01 1.99 16 41 H 0.05 1.62 7.56 -2.39 -0.02 1.60 16 42 H 0.07 1.94 7.43 -2.39 -0.02 1.92 16 43 H 0.05 2.16 7.50 -2.39 -0.02 2.14 16 44 H 0.08 2.77 7.35 -2.38 -0.02 2.75 16 45 H 0.06 3.66 6.06 -2.39 -0.01 3.65 16 46 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 47 H 0.25 14.60 8.31 -92.70 -0.77 13.83 16 48 H 0.04 1.51 5.93 -2.39 -0.01 1.50 16 49 H 0.05 2.15 5.06 -2.39 -0.01 2.14 16 50 H 0.04 1.84 7.96 -2.38 -0.02 1.82 16 51 H 0.08 2.87 6.62 -2.39 -0.02 2.86 16 Total: -1.00 -72.99 378.34 4.15 -68.84 By element: Atomic # 1 Polarization: 17.30 SS G_CDS: 0.95 Total: 18.25 kcal Atomic # 6 Polarization: 4.38 SS G_CDS: 7.39 Total: 11.76 kcal Atomic # 7 Polarization: -117.55 SS G_CDS: -6.16 Total: -123.71 kcal Atomic # 8 Polarization: -23.50 SS G_CDS: -0.05 Total: -23.55 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 2.03 Total: 48.41 kcal Total: -72.99 4.15 -68.84 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045923139.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.577 kcal (2) G-P(sol) polarization free energy of solvation -72.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.841 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds