Wall clock time and date at job start Wed Apr 1 2020 05:51:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50699 * 109.47314 * 2 1 4 4 N 1.30018 * 127.33735 * 270.15610 * 3 2 1 5 5 O 1.20649 * 112.30037 * 180.27003 * 4 3 2 6 6 C 1.33491 * 113.16126 * 359.73046 * 5 4 3 7 7 C 1.37358 * 106.34022 * 359.97438 * 6 5 4 8 8 C 1.47401 * 128.56707 * 179.97438 * 7 6 5 9 9 O 1.21612 * 120.00064 * 199.65989 * 8 7 6 10 10 N 1.34777 * 119.99909 * 19.66111 * 8 7 6 11 11 C 1.44582 * 118.78115 * 354.41605 * 10 8 7 12 12 C 1.54735 * 109.57416 * 270.58529 * 11 10 8 13 13 C 1.47027 * 110.65495 * 288.21991 * 12 11 10 14 14 C 1.52963 * 114.37268 * 62.98779 * 13 12 11 15 15 C 1.50555 * 108.99539 * 276.09917 * 14 13 12 16 16 C 1.53907 * 111.61947 * 214.46073 * 15 14 13 17 17 C 1.54159 * 104.89138 * 140.74269 * 16 15 14 18 18 N 1.47533 * 107.07788 * 1.64435 * 17 16 15 19 19 C 1.36940 * 126.98700 * 154.78755 * 18 17 16 20 20 H 1.08000 * 119.99922 * 193.64738 * 19 18 17 21 21 C 1.38808 * 119.99503 * 13.64929 * 19 18 17 22 22 N 1.31620 * 120.00384 * 10.71551 * 21 19 18 23 23 Si 1.86798 * 119.99912 * 190.71397 * 21 19 18 24 24 H 1.48502 * 109.47001 * 94.94069 * 23 21 19 25 25 H 1.48498 * 109.47483 * 214.94224 * 23 21 19 26 26 H 1.48499 * 109.47157 * 334.94308 * 23 21 19 27 27 C 1.48204 * 106.03735 * 334.78644 * 18 17 16 28 28 C 1.47562 * 118.78662 * 174.43401 * 10 8 7 29 29 H 1.09001 * 109.46963 * 299.99385 * 1 2 3 30 30 H 1.08991 * 109.47237 * 60.00163 * 1 2 3 31 31 H 1.09000 * 109.47014 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.46717 * 239.99913 * 2 1 3 33 33 H 1.09003 * 109.47044 * 120.00485 * 2 1 3 34 34 H 1.08002 * 126.83224 * 180.02562 * 6 5 4 35 35 H 1.09000 * 109.45693 * 30.62062 * 11 10 8 36 36 H 1.09004 * 109.45594 * 150.55358 * 11 10 8 37 37 H 1.08999 * 109.23721 * 48.52542 * 12 11 10 38 38 H 1.09005 * 109.23826 * 167.92078 * 12 11 10 39 39 H 1.08992 * 108.49815 * 184.24059 * 13 12 11 40 40 H 1.08997 * 108.50190 * 301.86690 * 13 12 11 41 41 H 1.09001 * 109.53717 * 156.25332 * 14 13 12 42 42 H 1.09001 * 109.56110 * 35.96334 * 14 13 12 43 43 H 1.08998 * 110.36474 * 21.88817 * 16 15 14 44 44 H 1.09008 * 110.35846 * 259.59404 * 16 15 14 45 45 H 1.08998 * 109.91357 * 120.99922 * 17 16 15 46 46 H 1.08998 * 109.91359 * 242.28403 * 17 16 15 47 47 H 0.97000 * 120.00155 * 180.02562 * 22 21 19 48 48 H 1.09001 * 110.67067 * 280.10076 * 27 18 17 49 49 H 1.09001 * 110.67203 * 156.96453 * 27 18 17 50 50 H 1.09001 * 108.98030 * 17.38982 * 28 10 8 51 51 H 1.09002 * 108.98225 * 258.67620 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2927 2.1652 -1.0337 5 8 2.6868 3.2617 -0.7207 6 6 2.7519 3.4388 0.6008 7 6 2.3293 2.2621 1.1696 8 6 2.2095 1.9235 2.5992 9 8 2.1675 0.7589 2.9468 10 7 2.1466 2.9047 3.5211 11 6 2.3213 4.2745 3.0929 12 6 3.8224 4.6466 3.1452 13 6 4.2755 4.7797 4.5375 14 6 4.1855 3.4909 5.3566 15 6 2.7863 3.3483 5.8936 16 6 2.7772 2.6900 7.2848 17 6 1.6922 3.4484 8.0748 18 7 1.1042 4.4433 7.1577 19 6 -0.1492 4.9903 7.2294 20 1 -0.5486 5.5370 6.3880 21 6 -0.9060 4.8422 8.3835 22 7 -0.3512 4.3657 9.4778 23 14 -2.7121 5.3193 8.3836 24 1 -3.5413 4.1183 8.1089 25 1 -3.0761 5.8794 9.7098 26 1 -2.9547 6.3393 7.3320 27 6 2.1456 4.7306 6.1431 28 6 1.9024 2.5411 4.9302 29 1 -0.3633 0.5137 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 3.0723 4.3302 1.1195 35 1 1.9552 4.3854 2.0722 36 1 1.7602 4.9358 3.7532 37 1 4.4029 3.8673 2.6514 38 1 3.9763 5.5923 2.6254 39 1 5.3126 5.1149 4.5331 40 1 3.6690 5.5415 5.0273 41 1 4.8916 3.5359 6.1857 42 1 4.4211 2.6374 4.7209 43 1 3.7481 2.8071 7.7661 44 1 2.5184 1.6343 7.2031 45 1 0.9230 2.7529 8.4105 46 1 2.1404 3.9521 8.9312 47 1 -0.8803 4.2618 10.2841 48 1 2.8826 5.4310 6.5359 49 1 1.6955 5.1168 5.2285 50 1 2.1102 1.4794 5.0636 51 1 0.8553 2.7284 5.1684 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045963322.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:51:18 Heat of formation + Delta-G solvation = 75.809478 kcal Electronic energy + Delta-G solvation = -32894.853940 eV Core-core repulsion = 28799.294506 eV Total energy + Delta-G solvation = -4095.559434 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -45.10621 -40.77874 -38.58126 -36.36851 -35.37649 -33.99666 -33.19233 -32.21407 -31.39715 -30.59603 -28.78674 -27.37071 -26.29102 -25.17057 -24.77517 -24.10883 -22.76674 -21.96036 -20.96982 -20.03381 -19.57576 -18.31571 -17.90195 -17.58359 -17.04267 -16.76743 -16.06594 -15.58684 -15.38140 -14.77768 -14.56113 -14.42295 -14.25126 -14.00803 -13.82671 -13.61372 -13.37334 -13.09015 -12.92468 -12.69371 -12.53574 -12.21174 -11.80608 -11.78859 -11.73558 -11.66363 -11.32830 -11.13957 -11.01357 -10.98750 -10.82420 -10.78592 -10.46897 -10.25427 -10.12002 -10.11060 -9.88428 -9.80798 -9.70916 -9.64132 -9.60062 -8.63299 -8.54399 -6.85604 -5.80536 -3.13557 0.90670 1.63322 2.64618 3.06503 3.15200 3.36165 3.41823 3.43761 3.82747 4.09479 4.44156 4.45817 4.59958 4.70234 4.74450 4.80967 4.98784 5.02184 5.11360 5.14588 5.19209 5.26046 5.28007 5.40611 5.44198 5.54204 5.65196 5.67224 5.68556 5.71984 5.82097 5.84629 5.95315 6.01904 6.05925 6.09121 6.14761 6.21542 6.26030 6.36109 6.42849 6.49728 6.58362 6.63601 6.77294 6.85860 7.38290 7.41728 7.55102 7.72030 8.00996 8.13592 8.18887 9.11637 9.74274 10.47933 11.33537 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012614 B = 0.003404 C = 0.003100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2219.275865 B = 8222.511912 C = 9030.598008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.050 4.050 3 C 0.071 3.929 4 N -0.360 5.360 5 O 0.093 5.907 6 C -0.029 4.029 7 C -0.242 4.242 8 C 0.587 3.413 9 O -0.532 6.532 10 N -0.585 5.585 11 C 0.070 3.930 12 C -0.142 4.142 13 C -0.132 4.132 14 C -0.096 4.096 15 C -0.084 4.084 16 C -0.131 4.131 17 C 0.168 3.832 18 N -0.597 5.597 19 C -0.231 4.231 20 H 0.075 0.925 21 C -0.002 4.002 22 N -0.913 5.913 23 Si 0.907 3.093 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.280 1.280 27 C 0.134 3.866 28 C 0.132 3.868 29 H 0.059 0.941 30 H 0.054 0.946 31 H 0.067 0.933 32 H 0.081 0.919 33 H 0.103 0.897 34 H 0.240 0.760 35 H 0.084 0.916 36 H 0.103 0.897 37 H 0.063 0.937 38 H 0.077 0.923 39 H 0.056 0.944 40 H 0.082 0.918 41 H 0.064 0.936 42 H 0.057 0.943 43 H 0.060 0.940 44 H 0.058 0.942 45 H 0.059 0.941 46 H 0.027 0.973 47 H 0.253 0.747 48 H 0.027 0.973 49 H 0.052 0.948 50 H 0.086 0.914 51 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.197 -1.986 -16.575 19.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.088 4.088 3 C -0.092 4.092 4 N -0.067 5.067 5 O 0.033 5.967 6 C -0.110 4.110 7 C -0.250 4.250 8 C 0.374 3.626 9 O -0.410 6.410 10 N -0.315 5.315 11 C -0.053 4.053 12 C -0.181 4.181 13 C -0.170 4.170 14 C -0.134 4.134 15 C -0.087 4.087 16 C -0.170 4.170 17 C 0.042 3.958 18 N -0.322 5.322 19 C -0.359 4.359 20 H 0.092 0.908 21 C -0.200 4.200 22 N -0.559 5.559 23 Si 0.737 3.263 24 H -0.216 1.216 25 H -0.218 1.218 26 H -0.206 1.206 27 C 0.008 3.992 28 C 0.012 3.988 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.086 0.914 32 H 0.100 0.900 33 H 0.121 0.879 34 H 0.256 0.744 35 H 0.102 0.898 36 H 0.121 0.879 37 H 0.081 0.919 38 H 0.096 0.904 39 H 0.075 0.925 40 H 0.100 0.900 41 H 0.083 0.917 42 H 0.076 0.924 43 H 0.078 0.922 44 H 0.077 0.923 45 H 0.078 0.922 46 H 0.045 0.955 47 H 0.063 0.937 48 H 0.044 0.956 49 H 0.070 0.930 50 H 0.104 0.896 51 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 8.887 -2.702 -17.495 19.808 hybrid contribution -0.866 0.418 1.072 1.440 sum 8.021 -2.284 -16.423 18.419 Atomic orbital electron populations 1.21683 0.93650 1.02554 1.02253 1.20076 0.96668 0.87441 1.04591 1.24860 0.99244 0.98769 0.86322 1.73638 1.16591 0.92726 1.23720 1.84579 1.61874 1.26797 1.23424 1.27511 0.99332 1.00503 0.83652 1.22403 1.11745 0.94923 0.95899 1.16978 0.77006 0.85455 0.83137 1.90767 1.50632 1.18662 1.80953 1.47492 1.69835 1.05881 1.08336 1.22451 0.96997 0.84145 1.01739 1.21375 0.95920 1.01747 0.99017 1.20637 1.01586 0.99671 0.95068 1.21069 0.96067 0.97225 0.99032 1.21389 0.94182 0.98288 0.94819 1.22757 1.00447 0.99493 0.94337 1.21161 0.92625 0.90895 0.91086 1.44832 1.11134 1.46467 1.29760 1.18950 0.88952 1.29894 0.98140 0.90768 1.24845 0.98653 1.01419 0.95077 1.69957 1.34587 1.50682 1.00628 0.86191 0.85168 0.77999 0.76934 1.21583 1.21750 1.20575 1.22141 0.91147 0.92680 0.93221 1.22000 1.00560 0.99749 0.76492 0.92144 0.92689 0.91402 0.90032 0.87910 0.74429 0.89831 0.87870 0.91874 0.90418 0.92530 0.89992 0.91716 0.92414 0.92165 0.92307 0.92222 0.95509 0.93675 0.95582 0.92979 0.89611 0.89974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 9.90 37.16 0.37 -1.11 16 2 C -0.05 -0.55 6.37 -27.88 -0.18 -0.73 16 3 C 0.07 0.89 6.83 -79.77 -0.55 0.35 16 4 N -0.36 -4.50 12.01 34.78 0.42 -4.09 16 5 O 0.09 1.00 11.06 18.66 0.21 1.21 16 6 C -0.03 -0.27 9.54 30.41 0.29 0.02 16 7 C -0.24 -3.01 6.13 -102.89 -0.63 -3.64 16 8 C 0.59 8.58 7.62 -12.53 -0.10 8.48 16 9 O -0.53 -9.34 15.07 5.27 0.08 -9.26 16 10 N -0.58 -7.97 2.30 -174.11 -0.40 -8.37 16 11 C 0.07 0.73 4.84 -4.15 -0.02 0.71 16 12 C -0.14 -1.23 4.12 -28.68 -0.12 -1.35 16 13 C -0.13 -1.41 4.98 -29.62 -0.15 -1.56 16 14 C -0.10 -1.24 5.01 -27.97 -0.14 -1.38 16 15 C -0.08 -1.33 0.59 -154.19 -0.09 -1.42 16 16 C -0.13 -2.31 6.06 -25.65 -0.16 -2.47 16 17 C 0.17 3.84 5.47 -2.87 -0.02 3.82 16 18 N -0.60 -14.11 3.08 -169.46 -0.52 -14.63 16 19 C -0.23 -6.09 10.30 -15.06 -0.16 -6.25 16 20 H 0.07 1.89 7.85 -52.49 -0.41 1.48 16 21 C 0.00 -0.06 5.39 -17.43 -0.09 -0.16 16 22 N -0.91 -26.17 11.03 55.49 0.61 -25.56 16 23 Si 0.91 21.50 29.57 -169.99 -5.03 16.48 16 24 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 25 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 26 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 27 C 0.13 2.43 4.17 -2.38 -0.01 2.42 16 28 C 0.13 2.15 4.93 -3.12 -0.02 2.13 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.10 1.25 7.01 -51.93 -0.36 0.89 16 34 H 0.24 1.47 4.00 -52.49 -0.21 1.26 16 35 H 0.08 0.71 4.24 -51.93 -0.22 0.49 16 36 H 0.10 1.22 4.97 -51.93 -0.26 0.96 16 37 H 0.06 0.55 7.55 -51.93 -0.39 0.16 16 38 H 0.08 0.46 8.08 -51.93 -0.42 0.04 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.08 0.97 4.79 -51.93 -0.25 0.72 16 41 H 0.06 0.82 7.39 -51.93 -0.38 0.44 16 42 H 0.06 0.77 7.59 -51.93 -0.39 0.38 16 43 H 0.06 0.97 7.42 -51.93 -0.39 0.58 16 44 H 0.06 1.00 7.58 -51.92 -0.39 0.61 16 45 H 0.06 1.54 7.21 -51.93 -0.37 1.16 16 46 H 0.03 0.68 8.06 -51.93 -0.42 0.26 16 47 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 48 H 0.03 0.49 6.90 -51.93 -0.36 0.13 16 49 H 0.05 0.89 4.57 -51.93 -0.24 0.65 16 50 H 0.09 1.48 6.53 -51.93 -0.34 1.14 16 51 H 0.08 1.56 7.72 -51.93 -0.40 1.16 16 LS Contribution 376.15 15.07 5.67 5.67 Total: -1.00 -31.32 376.15 -8.18 -39.49 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: -7.46 Total: 1.17 kcal Atomic # 6 Polarization: -0.35 SS G_CDS: -1.75 Total: -2.11 kcal Atomic # 7 Polarization: -52.75 SS G_CDS: 0.11 Total: -52.65 kcal Atomic # 8 Polarization: -8.34 SS G_CDS: 0.29 Total: -8.05 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.03 Total: 16.48 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.32 -8.18 -39.49 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045963322.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.304 kcal (2) G-P(sol) polarization free energy of solvation -31.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.494 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds