Wall clock time and date at job start Wed Apr 1 2020 05:38:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50701 * 109.46544 * 2 1 4 4 O 1.33495 * 126.83394 * 270.16750 * 3 2 1 5 5 N 1.20653 * 113.15709 * 180.30880 * 4 3 2 6 6 C 1.30013 * 112.30416 * 359.72086 * 5 4 3 7 7 C 1.37361 * 126.82562 * 90.00249 * 3 2 1 8 8 C 1.47395 * 128.56962 * 359.97438 * 7 3 2 9 9 O 1.21615 * 119.99367 * 10.17015 * 8 7 3 10 10 N 1.34770 * 120.00215 * 190.16750 * 8 7 3 11 11 C 1.44577 * 118.78637 * 0.46376 * 10 8 7 12 12 C 1.54722 * 109.57643 * 270.58423 * 11 10 8 13 13 C 1.47022 * 110.65904 * 288.21851 * 12 11 10 14 14 C 1.52969 * 114.37479 * 62.98727 * 13 12 11 15 15 C 1.50554 * 108.99100 * 276.10483 * 14 13 12 16 16 C 1.53910 * 111.61833 * 214.45888 * 15 14 13 17 17 C 1.54158 * 104.89353 * 140.74037 * 16 15 14 18 18 N 1.47544 * 107.07734 * 1.64485 * 17 16 15 19 19 C 1.36934 * 126.98488 * 154.78700 * 18 17 16 20 20 H 1.07994 * 119.99867 * 180.02562 * 19 18 17 21 21 C 1.38817 * 119.99855 * 0.02562 * 19 18 17 22 22 N 1.31619 * 119.99910 * 359.97438 * 21 19 18 23 23 Si 1.86792 * 119.99903 * 180.02562 * 21 19 18 24 24 H 1.48493 * 109.47543 * 59.99923 * 23 21 19 25 25 H 1.48504 * 109.47152 * 179.97438 * 23 21 19 26 26 H 1.48502 * 109.47323 * 299.99617 * 23 21 19 27 27 C 1.48202 * 106.03316 * 334.78374 * 18 17 16 28 28 C 1.47573 * 118.78083 * 180.48133 * 10 8 7 29 29 H 1.09010 * 109.46829 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47654 * 299.99318 * 1 2 3 31 31 H 1.09000 * 109.47456 * 60.00396 * 1 2 3 32 32 H 1.08999 * 109.47156 * 240.00527 * 2 1 3 33 33 H 1.08997 * 109.47041 * 119.99910 * 2 1 3 34 34 H 1.07996 * 127.33566 * 180.02562 * 6 5 4 35 35 H 1.09003 * 109.45448 * 30.61676 * 11 10 8 36 36 H 1.09007 * 109.45816 * 150.54950 * 11 10 8 37 37 H 1.09006 * 109.23873 * 48.52158 * 12 11 10 38 38 H 1.09005 * 109.24406 * 167.91607 * 12 11 10 39 39 H 1.08999 * 108.50212 * 184.23710 * 13 12 11 40 40 H 1.08994 * 108.50161 * 301.86457 * 13 12 11 41 41 H 1.08993 * 109.53884 * 156.25781 * 14 13 12 42 42 H 1.08999 * 109.55677 * 35.95810 * 14 13 12 43 43 H 1.08996 * 110.35911 * 21.88840 * 16 15 14 44 44 H 1.08999 * 110.35745 * 259.59134 * 16 15 14 45 45 H 1.09005 * 109.91330 * 120.99953 * 17 16 15 46 46 H 1.08996 * 109.91861 * 242.28159 * 17 16 15 47 47 H 0.97000 * 119.99949 * 180.02562 * 22 21 19 48 48 H 1.08994 * 110.67263 * 280.09673 * 27 18 17 49 49 H 1.09002 * 110.66700 * 156.96121 * 27 18 17 50 50 H 1.08996 * 108.98189 * 17.39708 * 28 10 8 51 51 H 1.09002 * 108.98356 * 258.66913 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 8 2.2960 2.1765 -1.0685 5 7 2.6930 3.2795 -0.7832 6 6 2.7608 3.4624 0.5022 7 6 2.3066 2.1971 1.0995 8 6 2.1823 1.8469 2.5258 9 8 1.9718 0.6946 2.8528 10 7 2.3021 2.8035 3.4676 11 6 2.5422 4.1663 3.0490 12 6 4.0655 4.4149 2.9415 13 6 4.6773 4.4718 4.2771 14 6 4.5706 3.1719 5.0763 15 6 3.2313 3.1271 5.7625 16 6 3.3194 2.4327 7.1333 17 6 2.3938 3.2533 8.0533 18 7 1.7939 4.3178 7.2263 19 6 0.6056 4.9615 7.4472 20 1 0.2720 5.7287 6.7642 21 6 -0.1702 4.6279 8.5490 22 7 0.2362 3.6926 9.3810 23 14 -1.7914 5.5055 8.8498 24 1 -2.6964 5.2839 7.6936 25 1 -2.4232 4.9694 10.0822 26 1 -1.5438 6.9607 9.0128 27 6 2.7386 4.5489 6.1081 28 6 2.1836 2.4210 4.8880 29 1 -0.3633 -1.0278 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8934 -0.5137 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.0816 4.3537 1.0209 35 1 2.0774 4.3350 2.0776 36 1 2.1132 4.8517 3.7802 37 1 4.5221 3.6057 2.3714 38 1 4.2399 5.3594 2.4260 39 1 5.7321 4.7225 4.1641 40 1 4.1933 5.2658 4.8458 41 1 5.3642 3.1366 5.8226 42 1 4.6637 2.3204 4.4022 43 1 4.3433 2.4578 7.5059 44 1 2.9665 1.4040 7.0606 45 1 1.6107 2.6126 8.4589 46 1 2.9729 3.6949 8.8642 47 1 -0.3060 3.4592 10.1507 48 1 3.5697 5.1764 6.4300 49 1 2.2251 4.9956 5.2567 50 1 2.3160 1.3427 4.9770 51 1 1.1880 2.6852 5.2445 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045972326.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:38:10 Heat of formation + Delta-G solvation = 80.931424 kcal Electronic energy + Delta-G solvation = -32996.653519 eV Core-core repulsion = 28901.316189 eV Total energy + Delta-G solvation = -4095.337330 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -45.09152 -40.70183 -38.55994 -36.34924 -34.88604 -34.15845 -33.52720 -32.83086 -30.75192 -30.39537 -28.79156 -27.28237 -26.24841 -25.17018 -24.56337 -24.14592 -22.92198 -22.31802 -20.91562 -19.85423 -19.18640 -18.29824 -17.90077 -17.52736 -17.05840 -16.72867 -16.05416 -15.47474 -15.19492 -14.71862 -14.66291 -14.61376 -14.06975 -13.96566 -13.80181 -13.57329 -13.41550 -13.06023 -12.86257 -12.60649 -12.47402 -12.06606 -12.00828 -11.76849 -11.72633 -11.58546 -11.24631 -11.15177 -11.00268 -10.95032 -10.82476 -10.75113 -10.51919 -10.31855 -10.15837 -10.11123 -9.72390 -9.66162 -9.62090 -9.59614 -9.52084 -8.68316 -8.45334 -6.89017 -5.67846 -3.09158 0.94204 1.62976 2.62716 3.07498 3.17538 3.38154 3.42747 3.44017 4.07293 4.13707 4.43180 4.46353 4.63451 4.72492 4.80558 4.89269 4.94450 4.95947 5.05945 5.11570 5.26227 5.36122 5.43729 5.47638 5.50897 5.59878 5.61418 5.62560 5.70752 5.75420 5.82956 5.90239 5.90446 5.97708 6.07691 6.15311 6.20687 6.27779 6.31450 6.42753 6.48201 6.57276 6.62469 6.69065 6.81038 6.92722 7.46619 7.49427 7.56311 7.82898 7.98654 8.19741 8.33132 9.17069 9.78523 10.48417 11.36585 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012967 B = 0.003402 C = 0.003139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2158.790779 B = 8229.617183 C = 8917.392409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.050 4.050 3 C 0.047 3.953 4 O 0.090 5.910 5 N -0.359 5.359 6 C 0.005 3.995 7 C -0.255 4.255 8 C 0.590 3.410 9 O -0.538 6.538 10 N -0.582 5.582 11 C 0.074 3.926 12 C -0.139 4.139 13 C -0.132 4.132 14 C -0.095 4.095 15 C -0.085 4.085 16 C -0.130 4.130 17 C 0.145 3.855 18 N -0.600 5.600 19 C -0.223 4.223 20 H 0.076 0.924 21 C -0.008 4.008 22 N -0.919 5.919 23 Si 0.911 3.089 24 H -0.285 1.285 25 H -0.290 1.290 26 H -0.286 1.286 27 C 0.134 3.866 28 C 0.133 3.867 29 H 0.072 0.928 30 H 0.063 0.937 31 H 0.057 0.943 32 H 0.089 0.911 33 H 0.117 0.883 34 H 0.217 0.783 35 H 0.086 0.914 36 H 0.099 0.901 37 H 0.063 0.937 38 H 0.074 0.926 39 H 0.054 0.946 40 H 0.080 0.920 41 H 0.063 0.937 42 H 0.056 0.944 43 H 0.056 0.944 44 H 0.058 0.942 45 H 0.104 0.896 46 H 0.009 0.991 47 H 0.253 0.747 48 H 0.026 0.974 49 H 0.052 0.948 50 H 0.084 0.916 51 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.121 -3.698 -17.619 19.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.088 4.088 3 C -0.017 4.017 4 O 0.030 5.970 5 N -0.065 5.065 6 C -0.177 4.177 7 C -0.262 4.262 8 C 0.378 3.622 9 O -0.417 6.417 10 N -0.312 5.312 11 C -0.049 4.049 12 C -0.178 4.178 13 C -0.169 4.169 14 C -0.133 4.133 15 C -0.087 4.087 16 C -0.169 4.169 17 C 0.020 3.980 18 N -0.324 5.324 19 C -0.351 4.351 20 H 0.094 0.906 21 C -0.204 4.204 22 N -0.567 5.567 23 Si 0.742 3.258 24 H -0.212 1.212 25 H -0.216 1.216 26 H -0.213 1.213 27 C 0.009 3.991 28 C 0.013 3.987 29 H 0.091 0.909 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.107 0.893 33 H 0.135 0.865 34 H 0.233 0.767 35 H 0.104 0.896 36 H 0.117 0.883 37 H 0.081 0.919 38 H 0.092 0.908 39 H 0.073 0.927 40 H 0.098 0.902 41 H 0.082 0.918 42 H 0.075 0.925 43 H 0.075 0.925 44 H 0.077 0.923 45 H 0.122 0.878 46 H 0.027 0.973 47 H 0.063 0.937 48 H 0.044 0.956 49 H 0.070 0.930 50 H 0.103 0.897 51 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 7.041 -3.517 -18.301 19.922 hybrid contribution -0.702 0.529 1.046 1.366 sum 6.339 -2.989 -17.255 18.624 Atomic orbital electron populations 1.21724 0.92899 1.03088 1.02652 1.20416 0.97184 0.85526 1.05691 1.24906 0.95576 0.96066 0.85168 1.84550 1.61214 1.17783 1.33446 1.73688 1.16262 0.98663 1.17845 1.27345 1.01123 0.99919 0.89266 1.22149 1.13384 0.95078 0.95608 1.16906 0.77137 0.85089 0.83115 1.90759 1.50076 1.19084 1.81790 1.47452 1.69551 1.07304 1.06941 1.22442 0.96049 0.84295 1.02142 1.21345 0.95770 1.01847 0.98792 1.20648 1.00598 0.99749 0.95917 1.21067 0.96562 0.97170 0.98547 1.21411 0.93807 0.98574 0.94930 1.22757 1.00151 0.99496 0.94484 1.21713 0.95043 0.90518 0.90716 1.44854 1.19541 1.42132 1.25883 1.18974 0.94157 1.14695 1.07287 0.90602 1.24765 0.99027 0.99262 0.97353 1.69767 1.38140 1.33066 1.15744 0.86210 0.83418 0.78883 0.77316 1.21207 1.21569 1.21263 1.22157 0.92556 0.92816 0.91611 1.21985 1.00314 0.99943 0.76484 0.90904 0.91783 0.92362 0.89272 0.86521 0.76686 0.89588 0.88267 0.91871 0.90796 0.92694 0.90155 0.91819 0.92491 0.92547 0.92309 0.87826 0.97270 0.93666 0.95605 0.92961 0.89748 0.89919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.89 37.16 0.37 -0.89 16 2 C -0.05 -0.46 6.15 -27.88 -0.17 -0.63 16 3 C 0.05 0.54 6.80 -34.63 -0.24 0.30 16 4 O 0.09 1.04 11.06 18.65 0.21 1.25 16 5 N -0.36 -4.38 12.01 31.81 0.38 -4.00 16 6 C 0.00 0.06 9.22 -14.72 -0.14 -0.08 16 7 C -0.25 -3.24 6.14 -102.89 -0.63 -3.87 16 8 C 0.59 8.84 7.63 -12.54 -0.10 8.75 16 9 O -0.54 -9.33 14.52 5.26 0.08 -9.25 16 10 N -0.58 -8.44 2.30 -174.11 -0.40 -8.84 16 11 C 0.07 0.88 4.80 -4.16 -0.02 0.86 16 12 C -0.14 -1.41 4.05 -28.69 -0.12 -1.52 16 13 C -0.13 -1.53 4.98 -29.61 -0.15 -1.68 16 14 C -0.10 -1.30 5.01 -27.97 -0.14 -1.44 16 15 C -0.08 -1.39 0.59 -154.19 -0.09 -1.48 16 16 C -0.13 -2.37 6.06 -25.65 -0.16 -2.52 16 17 C 0.15 3.40 6.01 -2.87 -0.02 3.38 16 18 N -0.60 -14.41 3.09 -169.45 -0.52 -14.93 16 19 C -0.22 -5.93 10.37 -15.06 -0.16 -6.08 16 20 H 0.08 1.94 7.83 -52.49 -0.41 1.53 16 21 C -0.01 -0.22 5.49 -17.43 -0.10 -0.32 16 22 N -0.92 -26.24 10.21 55.49 0.57 -25.68 16 23 Si 0.91 21.65 29.55 -169.99 -5.02 16.63 16 24 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 25 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 26 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 27 C 0.13 2.52 4.17 -2.38 -0.01 2.51 16 28 C 0.13 2.27 4.90 -3.11 -0.02 2.25 16 29 H 0.07 0.51 8.14 -51.92 -0.42 0.09 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.12 1.24 6.65 -51.93 -0.35 0.89 16 34 H 0.22 1.95 4.00 -52.49 -0.21 1.74 16 35 H 0.09 0.90 4.26 -51.93 -0.22 0.68 16 36 H 0.10 1.29 4.97 -51.93 -0.26 1.03 16 37 H 0.06 0.66 7.36 -51.93 -0.38 0.28 16 38 H 0.07 0.58 7.94 -51.93 -0.41 0.16 16 39 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.08 1.01 4.79 -51.93 -0.25 0.77 16 41 H 0.06 0.85 7.39 -51.93 -0.38 0.46 16 42 H 0.06 0.80 7.59 -51.93 -0.39 0.41 16 43 H 0.06 0.94 7.42 -51.93 -0.39 0.55 16 44 H 0.06 1.05 7.58 -51.93 -0.39 0.66 16 45 H 0.10 2.76 5.88 -51.93 -0.31 2.45 16 46 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 47 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 48 H 0.03 0.49 6.90 -51.93 -0.36 0.14 16 49 H 0.05 0.93 4.57 -51.93 -0.24 0.69 16 50 H 0.08 1.51 6.58 -51.93 -0.34 1.17 16 51 H 0.08 1.67 7.72 -51.93 -0.40 1.27 16 LS Contribution 372.89 15.07 5.62 5.62 Total: -1.00 -30.45 372.89 -8.32 -38.78 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: -7.36 Total: 2.91 kcal Atomic # 6 Polarization: -0.62 SS G_CDS: -1.87 Total: -2.48 kcal Atomic # 7 Polarization: -53.47 SS G_CDS: 0.03 Total: -53.45 kcal Atomic # 8 Polarization: -8.29 SS G_CDS: 0.28 Total: -8.00 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -30.45 -8.32 -38.78 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045972326.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.708 kcal (2) G-P(sol) polarization free energy of solvation -30.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.777 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds