Wall clock time and date at job start Wed Apr 1 2020 05:21:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50706 * 109.47223 * 2 1 4 4 O 1.33648 * 125.79845 * 270.00238 * 3 2 1 5 5 C 1.34217 * 110.90494 * 179.97438 * 4 3 2 6 6 C 1.34177 * 109.12450 * 359.70388 * 5 4 3 7 7 C 1.36416 * 125.80261 * 89.99838 * 3 2 1 8 8 C 1.47383 * 127.19098 * 0.02562 * 7 3 2 9 9 O 1.21613 * 120.00089 * 27.86117 * 8 7 3 10 10 N 1.34781 * 119.99916 * 207.86887 * 8 7 3 11 11 C 1.47083 * 120.88019 * 4.92526 * 10 8 7 12 12 C 1.53234 * 108.51819 * 231.20774 * 11 10 8 13 13 N 1.46900 * 109.34031 * 306.17044 * 12 11 10 14 14 C 1.46906 * 110.99667 * 187.25486 * 13 12 11 15 15 H 1.08994 * 110.63859 * 297.69464 * 14 13 12 16 16 C 1.55154 * 110.72132 * 60.84234 * 14 13 12 17 17 C 1.54902 * 101.58277 * 153.86116 * 16 14 13 18 18 N 1.47428 * 104.83446 * 322.99107 * 17 16 14 19 19 C 1.36933 * 125.64886 * 204.09298 * 18 17 16 20 20 H 1.08007 * 120.00016 * 164.15201 * 19 18 17 21 21 C 1.38810 * 120.00395 * 344.15455 * 19 18 17 22 22 N 1.31625 * 119.99676 * 324.41241 * 21 19 18 23 23 Si 1.86803 * 120.00448 * 144.41303 * 21 19 18 24 24 H 1.48493 * 109.46837 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.46980 * 239.99727 * 23 21 19 26 26 H 1.48503 * 109.47031 * 120.00016 * 23 21 19 27 27 C 1.47020 * 108.70167 * 24.35222 * 18 17 16 28 28 C 1.46891 * 111.26919 * 63.10649 * 13 12 11 29 29 C 1.47078 * 120.88144 * 184.94559 * 10 8 7 30 30 H 1.09004 * 109.47172 * 59.99850 * 1 2 3 31 31 H 1.09002 * 109.47351 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.47174 * 300.00275 * 1 2 3 33 33 H 1.08997 * 109.47062 * 240.00282 * 2 1 3 34 34 H 1.08998 * 109.46987 * 119.99460 * 2 1 3 35 35 H 1.08004 * 125.43319 * 180.02562 * 5 4 3 36 36 H 1.08004 * 127.02088 * 180.26657 * 6 5 4 37 37 H 1.08997 * 109.62941 * 111.49363 * 11 10 8 38 38 H 1.09001 * 109.62684 * 350.91506 * 11 10 8 39 39 H 1.09003 * 109.49208 * 186.20977 * 12 11 10 40 40 H 1.08999 * 109.49367 * 66.13163 * 12 11 10 41 41 H 1.09000 * 111.00411 * 35.78568 * 16 14 13 42 42 H 1.08996 * 111.00223 * 271.93817 * 16 14 13 43 43 H 1.09003 * 110.37386 * 204.15209 * 17 16 14 44 44 H 1.08997 * 110.37030 * 81.82799 * 17 16 14 45 45 H 0.97005 * 119.99782 * 356.50636 * 22 21 19 46 46 H 1.09000 * 109.87899 * 118.13084 * 27 18 17 47 47 H 1.08998 * 109.88678 * 239.29743 * 27 18 17 48 48 H 1.09006 * 109.49636 * 56.85747 * 28 13 12 49 49 H 1.09004 * 109.49459 * 176.93388 * 28 13 12 50 50 H 1.09000 * 109.62708 * 248.50184 * 29 10 8 51 51 H 1.09001 * 109.62368 * 9.08710 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 2.2929 2.1579 -1.0840 5 6 2.7248 3.3810 -0.7390 6 6 2.7513 3.4766 0.5991 7 6 2.2983 2.1733 1.1064 8 6 2.1551 1.7667 2.5158 9 8 2.2635 0.5955 2.8248 10 7 1.9038 2.6929 3.4621 11 6 1.6623 4.0975 3.0985 12 6 2.5829 4.9842 3.9435 13 7 2.3912 4.6689 5.3654 14 6 3.1266 5.6127 6.2177 15 1 4.1984 5.5435 6.0319 16 6 2.6229 7.0629 5.9927 17 6 2.9642 7.7250 7.3508 18 7 2.7040 6.6790 8.3566 19 6 2.4127 6.8961 9.6769 20 1 1.9907 6.1016 10.2746 21 6 2.6599 8.1373 10.2472 22 7 3.7106 8.8361 9.8727 23 14 1.5016 8.8158 11.5462 24 1 0.4051 7.8440 11.7878 25 1 0.9277 10.1017 11.0746 26 1 2.2509 9.0415 12.8083 27 6 2.8151 5.3639 7.7087 28 6 2.7769 3.2825 5.6605 29 6 1.8642 2.3260 4.8858 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5137 0.8900 35 1 3.0014 4.1649 -1.4285 36 1 3.0481 4.3347 1.1840 37 1 0.6220 4.3539 3.2987 38 1 1.8816 4.2448 2.0410 39 1 2.3405 6.0322 3.7675 40 1 3.6208 4.7991 3.6666 41 1 1.5486 7.0792 5.8090 42 1 3.1643 7.5424 5.1772 43 1 2.3204 8.5872 7.5250 44 1 4.0125 8.0222 7.3752 45 1 4.3396 8.4625 9.2357 46 1 3.6214 4.7917 8.1674 47 1 1.8735 4.8231 7.8036 48 1 3.8121 3.1211 5.3598 49 1 2.6752 3.0964 6.7297 50 1 0.8433 2.4122 5.2579 51 1 2.2170 1.3022 5.0100 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046026310.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:44 Heat of formation + Delta-G solvation = 29.949500 kcal Electronic energy + Delta-G solvation = -31292.171423 eV Core-core repulsion = 27194.623351 eV Total energy + Delta-G solvation = -4097.548072 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.99588 -40.22383 -38.63881 -36.82651 -34.56939 -34.40150 -33.29148 -32.08438 -31.25254 -29.37615 -29.11204 -28.18059 -26.12139 -24.78069 -23.94038 -23.54847 -23.11326 -21.90995 -20.72856 -20.15519 -19.63930 -19.05099 -17.84039 -17.44506 -16.91365 -16.40085 -16.14527 -15.61175 -15.40988 -15.02530 -14.82037 -14.80085 -14.65604 -14.22445 -13.80759 -13.73846 -13.62335 -13.29417 -13.10864 -13.06417 -12.95503 -12.68130 -12.28328 -12.18190 -11.94804 -11.72993 -11.53372 -11.42033 -11.38940 -11.26882 -10.69735 -10.50837 -10.46287 -10.33552 -10.20161 -10.17934 -10.02519 -9.89584 -9.63421 -9.01512 -8.83375 -8.27655 -8.22994 -6.91590 -6.17815 -3.07812 1.08411 1.65958 2.41975 2.78627 3.00317 3.53708 3.56101 3.71168 3.85204 4.08319 4.29882 4.49750 4.61028 4.66455 4.75148 4.82244 4.84087 4.92370 5.00985 5.07269 5.12179 5.18105 5.20903 5.25113 5.31946 5.38401 5.46068 5.50156 5.55029 5.60498 5.64251 5.65930 5.68990 5.70633 5.80275 5.83801 5.89760 5.93651 6.06924 6.27793 6.32182 6.32926 6.54964 6.59597 6.66518 6.91814 7.04551 7.11745 7.19003 7.32675 7.85216 7.97714 8.51179 9.02097 9.83578 10.41225 11.18436 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.026120 B = 0.002118 C = 0.002031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.702198 B =13215.506472 C =13781.688613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.057 4.057 3 C 0.076 3.924 4 O -0.175 6.175 5 C -0.034 4.034 6 C -0.198 4.198 7 C -0.238 4.238 8 C 0.592 3.408 9 O -0.545 6.545 10 N -0.602 5.602 11 C 0.085 3.915 12 C 0.040 3.960 13 N -0.524 5.524 14 C 0.072 3.928 15 H 0.043 0.957 16 C -0.124 4.124 17 C 0.145 3.855 18 N -0.599 5.599 19 C -0.344 4.344 20 H 0.065 0.935 21 C -0.023 4.023 22 N -0.906 5.906 23 Si 1.063 2.937 24 H -0.291 1.291 25 H -0.290 1.290 26 H -0.295 1.295 27 C 0.146 3.854 28 C 0.040 3.960 29 C 0.119 3.881 30 H 0.057 0.943 31 H 0.069 0.931 32 H 0.059 0.941 33 H 0.084 0.916 34 H 0.115 0.885 35 H 0.209 0.791 36 H 0.168 0.832 37 H 0.077 0.923 38 H 0.111 0.889 39 H 0.090 0.910 40 H 0.034 0.966 41 H 0.075 0.925 42 H 0.058 0.942 43 H 0.051 0.949 44 H 0.022 0.978 45 H 0.268 0.732 46 H 0.017 0.983 47 H 0.037 0.963 48 H 0.035 0.965 49 H 0.094 0.906 50 H 0.077 0.923 51 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.801 -12.983 -24.501 27.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.094 4.094 3 C 0.023 3.977 4 O -0.071 6.071 5 C -0.100 4.100 6 C -0.217 4.217 7 C -0.242 4.242 8 C 0.382 3.618 9 O -0.424 6.424 10 N -0.335 5.335 11 C -0.037 4.037 12 C -0.089 4.089 13 N -0.249 5.249 14 C -0.036 4.036 15 H 0.061 0.939 16 C -0.163 4.163 17 C 0.019 3.981 18 N -0.326 5.326 19 C -0.471 4.471 20 H 0.083 0.917 21 C -0.225 4.225 22 N -0.545 5.545 23 Si 0.892 3.108 24 H -0.217 1.217 25 H -0.217 1.217 26 H -0.223 1.223 27 C 0.020 3.980 28 C -0.089 4.089 29 C -0.003 4.003 30 H 0.076 0.924 31 H 0.088 0.912 32 H 0.078 0.922 33 H 0.103 0.897 34 H 0.133 0.867 35 H 0.226 0.774 36 H 0.185 0.815 37 H 0.095 0.905 38 H 0.129 0.871 39 H 0.109 0.891 40 H 0.052 0.948 41 H 0.094 0.906 42 H 0.076 0.924 43 H 0.069 0.931 44 H 0.039 0.961 45 H 0.078 0.922 46 H 0.035 0.965 47 H 0.055 0.945 48 H 0.053 0.947 49 H 0.112 0.888 50 H 0.096 0.904 51 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -4.618 -12.340 -23.414 26.867 hybrid contribution 1.448 -0.939 -0.907 1.949 sum -3.171 -13.279 -24.321 27.891 Atomic orbital electron populations 1.21736 0.93388 1.02797 1.02422 1.20437 0.96820 0.86586 1.05541 1.22791 0.97609 0.94268 0.83018 1.83771 1.65224 1.23135 1.34961 1.23946 1.03579 0.86064 0.96381 1.23046 1.06545 0.97678 0.94391 1.21101 1.13625 0.95654 0.93840 1.17231 0.75953 0.84874 0.83766 1.90741 1.52141 1.17417 1.82088 1.47948 1.69769 1.08971 1.06768 1.22582 1.00527 0.79558 1.01057 1.22462 0.97595 1.00172 0.88669 1.61998 1.57393 1.02082 1.03444 1.22675 0.94445 0.92372 0.94106 0.93870 1.22862 1.01282 0.93756 0.98414 1.21464 0.97997 0.92563 0.86043 1.44521 1.83496 0.99053 1.05566 1.19664 1.40787 1.00895 0.85740 0.91746 1.25694 0.98815 0.95647 1.02375 1.70755 1.08353 1.43557 1.31845 0.83590 0.75883 0.75807 0.75473 1.21743 1.21659 1.22283 1.21275 0.98051 0.89999 0.88713 1.22500 0.96787 0.88405 1.01171 1.21757 1.00828 0.99160 0.78543 0.92365 0.91156 0.92194 0.89699 0.86662 0.77408 0.81531 0.90519 0.87115 0.89130 0.94759 0.90609 0.92355 0.93092 0.96050 0.92157 0.96503 0.94462 0.94679 0.88820 0.90448 0.88743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.89 37.16 0.37 -0.68 16 2 C -0.06 -0.47 6.22 -27.88 -0.17 -0.64 16 3 C 0.08 0.75 6.62 -34.96 -0.23 0.52 16 4 O -0.17 -1.56 10.52 7.66 0.08 -1.48 16 5 C -0.03 -0.23 12.03 29.30 0.35 0.12 16 6 C -0.20 -1.64 8.87 -37.46 -0.33 -1.97 16 7 C -0.24 -2.59 5.84 -103.28 -0.60 -3.20 16 8 C 0.59 7.67 7.59 -12.54 -0.10 7.58 16 9 O -0.54 -8.33 14.68 5.27 0.08 -8.25 16 10 N -0.60 -7.21 3.01 -173.74 -0.52 -7.73 16 11 C 0.09 0.86 6.18 -3.60 -0.02 0.84 16 12 C 0.04 0.45 5.47 -3.70 -0.02 0.43 16 13 N -0.52 -7.40 4.46 -224.15 -1.00 -8.40 16 14 C 0.07 1.23 2.64 -65.87 -0.17 1.05 16 15 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 16 C -0.12 -2.17 5.39 -24.59 -0.13 -2.31 16 17 C 0.15 3.35 5.47 -2.53 -0.01 3.34 16 18 N -0.60 -15.34 3.29 -170.07 -0.56 -15.90 16 19 C -0.34 -9.83 9.93 -15.06 -0.15 -9.98 16 20 H 0.06 1.86 8.03 -52.48 -0.42 1.44 16 21 C -0.02 -0.65 4.94 -17.43 -0.09 -0.74 16 22 N -0.91 -27.44 13.04 55.49 0.72 -26.72 16 23 Si 1.06 25.62 30.04 -169.99 -5.11 20.51 16 24 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 25 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 26 H -0.30 -7.05 7.11 56.52 0.40 -6.65 16 27 C 0.15 3.08 5.72 -3.06 -0.02 3.06 16 28 C 0.04 0.53 5.44 -3.71 -0.02 0.51 16 29 C 0.12 1.46 6.58 -3.60 -0.02 1.44 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.12 1.13 6.40 -51.93 -0.33 0.80 16 35 H 0.21 0.59 8.06 -52.48 -0.42 0.17 16 36 H 0.17 1.12 6.29 -52.48 -0.33 0.79 16 37 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.11 0.92 2.89 -51.93 -0.15 0.77 16 39 H 0.09 0.95 6.80 -51.93 -0.35 0.60 16 40 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 42 H 0.06 0.87 7.93 -51.93 -0.41 0.45 16 43 H 0.05 1.27 8.01 -51.93 -0.42 0.86 16 44 H 0.02 0.53 7.04 -51.93 -0.37 0.16 16 45 H 0.27 8.17 6.64 -40.82 -0.27 7.90 16 46 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 47 H 0.04 0.80 7.68 -51.93 -0.40 0.40 16 48 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 49 H 0.09 1.29 6.77 -51.93 -0.35 0.93 16 50 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 51 H 0.09 1.18 7.09 -51.93 -0.37 0.81 16 LS Contribution 394.39 15.07 5.94 5.94 Total: -1.00 -34.02 394.39 -9.78 -43.80 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: -8.04 Total: -1.14 kcal Atomic # 6 Polarization: 0.74 SS G_CDS: -1.38 Total: -0.63 kcal Atomic # 7 Polarization: -57.39 SS G_CDS: -1.36 Total: -58.75 kcal Atomic # 8 Polarization: -9.89 SS G_CDS: 0.16 Total: -9.73 kcal Atomic # 14 Polarization: 25.62 SS G_CDS: -5.11 Total: 20.51 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -34.02 -9.78 -43.80 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046026310.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.749 kcal (2) G-P(sol) polarization free energy of solvation -34.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.799 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds