Wall clock time and date at job start Wed Apr 1 2020 05:21:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50696 * 109.47720 * 2 1 4 4 C 1.35130 * 125.61867 * 90.01494 * 3 2 1 5 5 C 1.40364 * 107.11772 * 179.71348 * 4 3 2 6 6 C 1.36542 * 106.70518 * 0.40985 * 5 4 3 7 7 C 1.46662 * 125.98852 * 179.85203 * 6 5 4 8 8 O 1.21697 * 119.99471 * 7.50368 * 7 6 5 9 9 N 1.34776 * 120.00207 * 187.50371 * 7 6 5 10 10 C 1.47073 * 120.87898 * 186.44174 * 9 7 6 11 11 C 1.53236 * 108.52049 * 231.20431 * 10 9 7 12 12 N 1.46899 * 109.34367 * 306.17247 * 11 10 9 13 13 C 1.46898 * 111.00314 * 187.25030 * 12 11 10 14 14 H 1.09004 * 110.88944 * 303.88532 * 13 12 11 15 15 C 1.55153 * 111.00731 * 179.97438 * 13 12 11 16 16 C 1.54322 * 102.94721 * 206.42647 * 15 13 12 17 17 N 1.47024 * 107.26861 * 22.19202 * 16 15 13 18 18 C 1.36938 * 125.64776 * 181.02381 * 17 16 15 19 19 H 1.07996 * 119.99799 * 173.01925 * 18 17 16 20 20 C 1.38811 * 119.99893 * 353.01566 * 18 17 16 21 21 N 1.31617 * 119.99765 * 152.56430 * 20 18 17 22 22 Si 1.86801 * 120.00102 * 332.56302 * 20 18 17 23 23 H 1.48497 * 109.46981 * 85.08492 * 22 20 18 24 24 H 1.48496 * 109.47054 * 325.08329 * 22 20 18 25 25 H 1.48497 * 109.47099 * 205.08301 * 22 20 18 26 26 C 1.47425 * 108.70478 * 1.28921 * 17 16 15 27 27 C 1.46899 * 111.26589 * 63.10336 * 12 11 10 28 28 C 1.47077 * 120.87970 * 6.46562 * 9 7 6 29 29 O 1.33930 * 125.61533 * 269.97952 * 3 2 1 30 30 H 1.09003 * 109.47003 * 300.00437 * 1 2 3 31 31 H 1.09005 * 109.47341 * 59.99914 * 1 2 3 32 32 H 1.08998 * 109.47243 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.47003 * 239.99563 * 2 1 3 34 34 H 1.09008 * 109.47041 * 120.00511 * 2 1 3 35 35 H 1.08006 * 126.43697 * 359.96168 * 4 3 2 36 36 H 1.07995 * 126.64887 * 180.29580 * 5 4 3 37 37 H 1.09003 * 109.62482 * 111.50152 * 10 9 7 38 38 H 1.08995 * 109.62987 * 350.91780 * 10 9 7 39 39 H 1.09006 * 109.49564 * 186.21113 * 11 10 9 40 40 H 1.09003 * 109.49270 * 66.13372 * 11 10 9 41 41 H 1.09010 * 110.71618 * 88.05959 * 15 13 12 42 42 H 1.09001 * 110.87439 * 324.86808 * 15 13 12 43 43 H 1.08997 * 109.88185 * 262.77894 * 16 15 13 44 44 H 1.08996 * 110.01419 * 141.68309 * 16 15 13 45 45 H 0.96994 * 120.00307 * 5.01098 * 21 20 18 46 46 H 1.09005 * 110.36464 * 94.47667 * 26 17 16 47 47 H 1.08996 * 110.36997 * 216.80104 * 26 17 16 48 48 H 1.09001 * 109.49645 * 56.85702 * 27 12 11 49 49 H 1.09002 * 109.49542 * 176.93352 * 27 12 11 50 50 H 1.08993 * 109.62738 * 248.50431 * 28 9 7 51 51 H 1.09001 * 109.63203 * 8.88861 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.2951 2.1626 1.0985 5 6 2.7451 3.4153 0.6531 6 6 2.7253 3.3770 -0.7117 7 6 3.1123 4.4696 -1.6102 8 8 3.6215 5.4780 -1.1577 9 7 2.9041 4.3568 -2.9370 10 6 3.4099 5.3753 -3.8697 11 6 2.2567 5.8225 -4.7742 12 7 1.6515 4.6444 -5.4095 13 6 0.6562 5.0411 -6.4145 14 1 -0.1069 5.6826 -5.9736 15 6 0.0173 3.7968 -7.0859 16 6 -0.4124 4.3322 -8.4681 17 7 0.4046 5.5219 -8.7486 18 6 0.3178 6.3034 -9.8696 19 1 0.8832 7.2214 -9.9330 20 6 -0.4969 5.9158 -10.9245 21 7 -1.0161 6.8240 -11.7232 22 14 -0.8563 4.1051 -11.2106 23 1 -2.0012 3.6877 -10.3620 24 1 0.3410 3.3010 -10.8572 25 1 -1.1945 3.8875 -12.6401 26 6 1.3373 5.7303 -7.6260 27 6 1.0604 3.7447 -4.4099 28 6 2.1647 3.2122 -3.4905 29 8 2.2928 2.1559 -1.0888 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5140 0.8900 35 1 2.1839 1.8490 2.1260 36 1 3.0467 4.2487 1.2702 37 1 4.2086 4.9504 -4.4778 38 1 3.7881 6.2299 -3.3088 39 1 2.6372 6.4951 -5.5430 40 1 1.5057 6.3399 -4.1771 41 1 -0.8483 3.4544 -6.5188 42 1 0.7480 2.9951 -7.1930 43 1 -1.4678 4.6035 -8.4487 44 1 -0.2385 3.5745 -9.2321 45 1 -0.7721 7.7571 -11.6200 46 1 2.2987 5.2633 -7.8398 47 1 1.4664 6.7952 -7.4328 48 1 0.3261 4.2909 -3.8178 49 1 0.5733 2.9102 -4.9144 50 1 2.8436 2.5795 -4.0620 51 1 1.7224 2.6348 -2.6786 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046040168.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:54 Heat of formation + Delta-G solvation = 9.987688 kcal Electronic energy + Delta-G solvation = -31211.668333 eV Core-core repulsion = 27113.254652 eV Total energy + Delta-G solvation = -4098.413681 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.83376 -41.24931 -40.01293 -38.32210 -35.86754 -35.12687 -34.22754 -33.90287 -32.59737 -31.23762 -30.44554 -29.51545 -27.66218 -25.85163 -25.00801 -24.70553 -23.37026 -22.60112 -22.23759 -21.62230 -21.36882 -20.66833 -19.53477 -18.77027 -17.82348 -17.57171 -17.08861 -17.02326 -16.64867 -16.19370 -15.97845 -15.75865 -15.60219 -15.32381 -15.19299 -15.11215 -14.58791 -14.49491 -14.18652 -14.15251 -13.99952 -13.97359 -13.63139 -13.34159 -13.23450 -12.99659 -12.92156 -12.62370 -12.43795 -12.39329 -12.29698 -12.20476 -11.89092 -11.83637 -11.68021 -11.55674 -11.38810 -11.05353 -11.04545 -10.59781 -10.06971 -9.54220 -9.36117 -9.16789 -8.67095 -5.41589 -0.06180 1.31010 1.39909 1.42203 1.52891 1.71889 1.86448 2.01302 2.52345 2.64962 3.08072 3.29623 3.41846 3.57078 3.69073 3.83366 3.86333 3.89171 3.97513 4.10896 4.15031 4.21797 4.26229 4.30383 4.35824 4.36805 4.40581 4.49982 4.54405 4.61828 4.70673 4.73730 4.78135 4.79560 4.84048 4.90170 4.92383 4.95762 5.03310 5.05730 5.06900 5.10738 5.22851 5.30146 5.36170 5.46223 5.54683 5.81158 5.95433 5.97544 6.09844 6.18387 6.80140 6.82560 7.47913 8.12373 8.83519 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017651 B = 0.002381 C = 0.002141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.957368 B =11756.775535 C =13076.667124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.047 4.047 3 C 0.026 3.974 4 C -0.225 4.225 5 C -0.117 4.117 6 C -0.108 4.108 7 C 0.599 3.401 8 O -0.563 6.563 9 N -0.604 5.604 10 C 0.123 3.877 11 C 0.045 3.955 12 N -0.525 5.525 13 C 0.085 3.915 14 H 0.045 0.955 15 C -0.105 4.105 16 C 0.103 3.897 17 N -0.632 5.632 18 C -0.322 4.322 19 H 0.043 0.957 20 C -0.080 4.080 21 N -0.953 5.953 22 Si 1.114 2.886 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.307 1.307 26 C 0.146 3.854 27 C 0.042 3.958 28 C 0.108 3.892 29 O -0.159 6.159 30 H 0.059 0.941 31 H 0.050 0.950 32 H 0.084 0.916 33 H 0.095 0.905 34 H 0.120 0.880 35 H 0.181 0.819 36 H 0.160 0.840 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.089 0.911 40 H 0.031 0.969 41 H 0.099 0.901 42 H 0.095 0.905 43 H 0.027 0.973 44 H 0.030 0.970 45 H 0.247 0.753 46 H 0.035 0.965 47 H 0.028 0.972 48 H 0.032 0.968 49 H 0.112 0.888 50 H 0.090 0.910 51 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.490 -18.564 29.873 35.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.084 4.084 3 C -0.026 4.026 4 C -0.244 4.244 5 C -0.138 4.138 6 C -0.159 4.159 7 C 0.389 3.611 8 O -0.445 6.445 9 N -0.335 5.335 10 C 0.001 3.999 11 C -0.084 4.084 12 N -0.250 5.250 13 C -0.024 4.024 14 H 0.063 0.937 15 C -0.143 4.143 16 C -0.022 4.022 17 N -0.360 5.360 18 C -0.451 4.451 19 H 0.061 0.939 20 C -0.273 4.273 21 N -0.596 5.596 22 Si 0.941 3.059 23 H -0.193 1.193 24 H -0.201 1.201 25 H -0.235 1.235 26 C 0.021 3.979 27 C -0.086 4.086 28 C -0.013 4.013 29 O -0.056 6.056 30 H 0.078 0.922 31 H 0.069 0.931 32 H 0.103 0.897 33 H 0.113 0.887 34 H 0.138 0.862 35 H 0.198 0.802 36 H 0.177 0.823 37 H 0.108 0.892 38 H 0.110 0.890 39 H 0.108 0.892 40 H 0.049 0.951 41 H 0.117 0.883 42 H 0.113 0.887 43 H 0.045 0.955 44 H 0.047 0.953 45 H 0.057 0.943 46 H 0.053 0.947 47 H 0.047 0.953 48 H 0.051 0.949 49 H 0.130 0.870 50 H 0.108 0.892 51 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 5.248 -19.339 28.543 34.875 hybrid contribution 0.442 2.808 0.841 2.964 sum 5.690 -16.531 29.385 34.192 Atomic orbital electron populations 1.21805 0.93083 1.03626 1.02334 1.20439 0.96833 0.84930 1.06232 1.23732 0.98902 0.96070 0.83934 1.21889 1.07966 0.93289 1.01236 1.22195 0.99120 0.99849 0.92653 1.21690 1.13472 0.86196 0.94557 1.16935 0.78163 0.84556 0.81454 1.90836 1.46994 1.30439 1.76195 1.48178 1.54703 1.25469 1.05162 1.21760 0.96068 0.91888 0.90174 1.22447 0.96458 0.92391 0.97093 1.61923 1.32228 1.16631 1.14199 1.22589 0.92157 0.96440 0.91184 0.93667 1.22600 1.01426 0.97029 0.93216 1.21877 0.94706 0.88622 0.96971 1.44861 1.40969 1.31107 1.19078 1.19915 1.28242 1.01484 0.95443 0.93876 1.27085 0.96505 1.09368 0.94385 1.71036 1.40160 1.01802 1.46649 0.83181 0.76947 0.71195 0.74546 1.19317 1.20083 1.23549 1.21612 0.92683 0.97071 0.86578 1.22575 0.95553 0.97690 0.92814 1.22353 0.93936 0.87140 0.97889 1.84140 1.64815 1.21771 1.34893 0.92180 0.93094 0.89690 0.88682 0.86199 0.80155 0.82270 0.89197 0.89038 0.89239 0.95102 0.88274 0.88699 0.95512 0.95296 0.94337 0.94685 0.95350 0.94920 0.86959 0.89213 0.86752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.74 9.89 71.98 0.71 -0.03 16 2 C -0.05 -0.24 6.46 29.85 0.19 -0.04 16 3 C 0.03 0.31 6.57 24.97 0.16 0.48 16 4 C -0.23 -2.86 10.77 22.07 0.24 -2.62 16 5 C -0.12 -2.16 10.63 22.39 0.24 -1.92 16 6 C -0.11 -2.29 6.77 24.07 0.16 -2.13 16 7 C 0.60 15.29 7.66 86.44 0.66 15.95 16 8 O -0.56 -17.78 16.33 -4.34 -0.07 -17.85 16 9 N -0.60 -13.47 3.01 -822.70 -2.48 -15.94 16 10 C 0.12 2.74 6.61 86.35 0.57 3.32 16 11 C 0.04 1.08 5.52 86.38 0.48 1.56 16 12 N -0.52 -12.82 4.52 -861.44 -3.90 -16.72 16 13 C 0.09 2.60 2.73 46.39 0.13 2.73 16 14 H 0.05 1.46 8.14 -2.38 -0.02 1.44 16 15 C -0.10 -3.04 5.03 31.78 0.16 -2.88 16 16 C 0.10 4.27 4.90 86.73 0.42 4.69 16 17 N -0.63 -31.23 3.32 -691.54 -2.29 -33.52 16 18 C -0.32 -19.17 10.44 84.03 0.88 -18.29 16 19 H 0.04 2.77 8.06 -2.91 -0.02 2.75 16 20 C -0.08 -4.82 5.44 84.86 0.46 -4.36 16 21 N -0.95 -62.06 13.70 21.65 0.30 -61.77 16 22 Si 1.11 54.30 24.63 68.60 1.69 55.99 16 23 H -0.27 -11.78 6.66 99.48 0.66 -11.11 16 24 H -0.27 -12.38 6.58 99.48 0.65 -11.73 16 25 H -0.31 -15.17 7.11 99.48 0.71 -14.46 16 26 C 0.15 5.81 5.95 86.93 0.52 6.33 16 27 C 0.04 0.80 5.43 86.38 0.47 1.27 16 28 C 0.11 1.91 6.24 86.35 0.54 2.45 16 29 O -0.16 -2.68 7.28 -5.06 -0.04 -2.72 16 30 H 0.06 0.32 8.14 -2.39 -0.02 0.30 16 31 H 0.05 0.37 8.14 -2.38 -0.02 0.35 16 32 H 0.08 0.18 8.14 -2.39 -0.02 0.16 16 33 H 0.09 0.37 8.14 -2.39 -0.02 0.35 16 34 H 0.12 0.10 8.14 -2.38 -0.02 0.08 16 35 H 0.18 1.23 8.06 -2.91 -0.02 1.21 16 36 H 0.16 2.79 8.06 -2.91 -0.02 2.77 16 37 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 38 H 0.09 2.17 7.04 -2.39 -0.02 2.15 16 39 H 0.09 2.24 7.05 -2.38 -0.02 2.22 16 40 H 0.03 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.10 2.24 7.96 -2.38 -0.02 2.23 16 42 H 0.09 2.47 8.11 -2.39 -0.02 2.45 16 43 H 0.03 1.18 7.54 -2.39 -0.02 1.16 16 44 H 0.03 1.25 3.83 -2.39 -0.01 1.24 16 45 H 0.25 16.22 8.73 -92.71 -0.81 15.42 16 46 H 0.04 1.40 8.14 -2.38 -0.02 1.38 16 47 H 0.03 1.17 7.87 -2.39 -0.02 1.15 16 48 H 0.03 0.67 8.14 -2.39 -0.02 0.66 16 49 H 0.11 1.77 6.64 -2.39 -0.02 1.75 16 50 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 51 H 0.12 1.83 4.36 -12.52 -0.05 1.78 16 Total: -1.00 -77.24 393.04 0.95 -76.30 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: 0.74 Total: 9.73 kcal Atomic # 6 Polarization: -0.49 SS G_CDS: 6.99 Total: 6.50 kcal Atomic # 7 Polarization: -119.58 SS G_CDS: -8.37 Total: -127.95 kcal Atomic # 8 Polarization: -20.46 SS G_CDS: -0.11 Total: -20.57 kcal Atomic # 14 Polarization: 54.30 SS G_CDS: 1.69 Total: 55.99 kcal Total: -77.24 0.95 -76.30 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046040168.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.283 kcal (2) G-P(sol) polarization free energy of solvation -77.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.296 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds