Wall clock time and date at job start Wed Apr 1 2020 05:41:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50699 * 109.47298 * 2 1 4 4 N 1.30182 * 126.80205 * 89.97415 * 3 2 1 5 5 O 1.20922 * 111.60116 * 180.02562 * 4 3 2 6 6 C 1.34037 * 111.56979 * 0.02562 * 5 4 3 7 7 C 1.50700 * 126.77505 * 180.02562 * 6 5 4 8 8 C 1.52999 * 109.46983 * 269.97069 * 7 6 5 9 9 C 1.35452 * 106.44718 * 0.02562 * 6 5 4 10 10 C 1.50699 * 128.00777 * 180.02562 * 9 6 5 11 11 C 1.50702 * 109.46629 * 269.97295 * 10 9 6 12 12 O 1.21279 * 120.00327 * 359.97438 * 11 10 9 13 13 N 1.34784 * 119.99546 * 179.97438 * 11 10 9 14 14 C 1.46666 * 125.33379 * 179.97438 * 13 11 10 15 15 C 1.53726 * 107.94212 * 180.52503 * 14 13 11 16 16 H 1.09004 * 112.56695 * 139.72160 * 15 14 13 17 17 C 1.53688 * 109.34094 * 266.25379 * 15 14 13 18 18 N 1.47175 * 107.73523 * 128.69298 * 17 15 14 19 19 C 1.36932 * 125.26009 * 180.36345 * 18 17 15 20 20 H 1.08001 * 120.00687 * 173.18381 * 19 18 17 21 21 C 1.38823 * 119.99765 * 353.19014 * 19 18 17 22 22 N 1.31622 * 119.99727 * 6.95886 * 21 19 18 23 23 Si 1.86794 * 119.99853 * 186.96385 * 21 19 18 24 24 H 1.48498 * 109.47107 * 94.98663 * 23 21 19 25 25 H 1.48505 * 109.46836 * 214.98231 * 23 21 19 26 26 H 1.48494 * 109.47456 * 334.97958 * 23 21 19 27 27 C 1.46748 * 109.40850 * 359.65329 * 18 17 15 28 28 C 1.53924 * 106.72125 * 342.40681 * 27 18 17 29 29 H 1.08996 * 113.01273 * 150.83496 * 28 27 18 30 30 C 1.46774 * 125.33832 * 359.69778 * 13 11 10 31 31 H 1.08990 * 109.47023 * 59.99980 * 1 2 3 32 32 H 1.09004 * 109.47086 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.47140 * 299.99861 * 1 2 3 34 34 H 1.08992 * 109.47320 * 239.99679 * 2 1 3 35 35 H 1.09006 * 109.47214 * 119.99856 * 2 1 3 36 36 H 1.08999 * 109.47433 * 29.96895 * 7 6 5 37 37 H 1.09007 * 109.47238 * 149.97188 * 7 6 5 38 38 H 1.09007 * 109.47036 * 59.99995 * 8 7 6 39 39 H 1.09004 * 109.47328 * 179.97438 * 8 7 6 40 40 H 1.09004 * 109.47331 * 300.00319 * 8 7 6 41 41 H 1.09007 * 109.47076 * 29.96830 * 10 9 6 42 42 H 1.08996 * 109.47067 * 149.97359 * 10 9 6 43 43 H 1.09001 * 109.77335 * 300.14142 * 14 13 11 44 44 H 1.09001 * 109.77520 * 60.90889 * 14 13 11 45 45 H 1.09001 * 109.76246 * 247.19360 * 17 15 14 46 46 H 1.08998 * 109.76294 * 7.91611 * 17 15 14 47 47 H 0.96997 * 119.99911 * 180.02562 * 22 21 19 48 48 H 1.09005 * 110.00604 * 223.09013 * 27 18 17 49 49 H 1.08998 * 110.00835 * 101.72355 * 27 18 17 50 50 H 1.09007 * 110.02518 * 280.78903 * 30 13 11 51 51 H 1.08998 * 110.03130 * 42.20656 * 30 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2919 2.1562 1.0424 5 8 2.6806 3.2565 0.7253 6 6 2.7298 3.3968 -0.6068 7 6 3.1631 4.6222 -1.3695 8 6 1.9497 5.5176 -1.6278 9 6 2.3132 2.2198 -1.1320 10 6 2.1815 1.8475 -2.5864 11 6 0.7980 2.1970 -3.0710 12 8 -0.0024 2.6985 -2.3103 13 7 0.4502 1.9521 -4.3500 14 6 -0.8589 2.2434 -4.9436 15 6 -0.8231 1.7937 -6.4132 16 1 -1.7504 1.3143 -6.7267 17 6 -0.4319 2.9858 -7.3009 18 7 0.6812 2.5568 -8.1627 19 6 1.3121 3.3433 -9.0893 20 1 2.1912 2.9778 -9.5992 21 6 0.8216 4.6106 -9.3733 22 7 -0.1637 5.1104 -8.6579 23 14 1.5600 5.6063 -10.7705 24 1 0.7541 5.4052 -12.0015 25 1 1.5578 7.0463 -10.4072 26 1 2.9551 5.1594 -11.0136 27 6 1.0206 1.1610 -7.8624 28 6 0.4019 0.8403 -6.4900 29 1 0.1367 -0.2109 -6.3773 30 6 1.3240 1.3575 -5.3684 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.8933 -0.5138 -0.8899 35 1 1.8934 -0.5138 0.8900 36 1 3.9020 5.1711 -0.7858 37 1 3.6020 4.3216 -2.3210 38 1 1.5108 5.8182 -0.6764 39 1 2.2632 6.4042 -2.1791 40 1 1.2107 4.9687 -2.2115 41 1 2.9205 2.3963 -3.1703 42 1 2.3480 0.7767 -2.7038 43 1 -1.6359 1.6964 -4.4096 44 1 -1.0581 3.3137 -4.8904 45 1 -1.2763 3.2705 -7.9287 46 1 -0.1362 3.8289 -6.6765 47 1 -0.5067 5.9957 -8.8565 48 1 2.1032 1.0411 -7.8207 49 1 0.6011 0.5032 -8.6236 50 1 2.0065 2.1114 -5.7610 51 1 1.8885 0.5299 -4.9390 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001048867408.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:41:02 Heat of formation + Delta-G solvation = 40.291414 kcal Electronic energy + Delta-G solvation = -32094.358353 eV Core-core repulsion = 27997.258740 eV Total energy + Delta-G solvation = -4097.099613 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -44.93308 -40.20956 -38.34638 -35.83102 -34.99769 -34.88005 -32.42285 -31.99221 -30.90950 -30.28804 -29.48140 -28.46188 -25.55831 -25.48656 -24.68022 -23.79894 -23.09318 -21.68383 -20.16955 -19.88203 -19.35395 -19.08914 -17.71883 -17.08042 -16.97697 -16.63062 -16.04431 -15.46542 -15.18875 -14.67730 -14.48674 -14.31409 -14.26508 -13.82135 -13.74820 -13.27586 -13.25257 -13.02693 -12.78986 -12.71683 -12.66464 -12.23210 -12.06843 -12.00239 -11.79535 -11.56578 -11.55218 -11.46243 -11.40579 -11.24311 -10.94017 -10.86573 -10.80889 -10.47488 -10.15537 -10.12816 -10.01203 -9.93125 -9.71819 -9.65307 -9.13669 -8.63845 -8.36336 -6.89700 -5.79702 -3.12641 1.44216 2.13258 2.76718 3.03695 3.27458 3.35580 3.41134 3.43222 4.06692 4.31386 4.43889 4.58283 4.63939 4.75523 4.79969 4.90078 5.07075 5.09044 5.12449 5.13441 5.19838 5.27420 5.28756 5.33582 5.43549 5.52161 5.56442 5.61189 5.63925 5.66942 5.69908 5.78704 5.80990 5.90134 5.91901 5.95282 6.01960 6.11980 6.15306 6.22587 6.25305 6.31923 6.49105 6.52573 6.57934 6.75031 7.46805 7.54767 7.72521 7.75193 8.19216 8.26998 8.32551 9.14486 9.75774 10.39699 11.32074 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014273 B = 0.003012 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1961.209775 B = 9293.065649 C =10409.142750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.043 4.043 3 C 0.037 3.963 4 N -0.370 5.370 5 O 0.095 5.905 6 C -0.012 4.012 7 C -0.042 4.042 8 C -0.151 4.151 9 C -0.178 4.178 10 C -0.059 4.059 11 C 0.528 3.472 12 O -0.535 6.535 13 N -0.607 5.607 14 C 0.122 3.878 15 C -0.123 4.123 16 H 0.090 0.910 17 C 0.185 3.815 18 N -0.603 5.603 19 C -0.233 4.233 20 H 0.078 0.922 21 C -0.004 4.004 22 N -0.918 5.918 23 Si 0.910 3.090 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.281 1.281 27 C 0.147 3.853 28 C -0.111 4.111 29 H 0.089 0.911 30 C 0.110 3.890 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.055 0.945 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.086 0.914 37 H 0.095 0.905 38 H 0.058 0.942 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.105 0.895 42 H 0.103 0.897 43 H 0.057 0.943 44 H 0.072 0.928 45 H 0.049 0.951 46 H 0.047 0.953 47 H 0.253 0.747 48 H 0.036 0.964 49 H 0.021 0.979 50 H 0.079 0.921 51 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.981 -8.970 13.519 16.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.082 4.082 3 C -0.122 4.122 4 N -0.075 5.075 5 O 0.031 5.969 6 C -0.075 4.075 7 C -0.080 4.080 8 C -0.209 4.209 9 C -0.182 4.182 10 C -0.099 4.099 11 C 0.316 3.684 12 O -0.413 6.413 13 N -0.341 5.341 14 C 0.000 4.000 15 C -0.143 4.143 16 H 0.108 0.892 17 C 0.060 3.940 18 N -0.330 5.330 19 C -0.361 4.361 20 H 0.096 0.904 21 C -0.201 4.201 22 N -0.565 5.565 23 Si 0.740 3.260 24 H -0.216 1.216 25 H -0.218 1.218 26 H -0.206 1.206 27 C 0.020 3.980 28 C -0.130 4.130 29 H 0.107 0.893 30 C -0.013 4.013 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.074 0.926 34 H 0.101 0.899 35 H 0.097 0.903 36 H 0.105 0.895 37 H 0.113 0.887 38 H 0.077 0.923 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.123 0.877 42 H 0.121 0.879 43 H 0.076 0.924 44 H 0.090 0.910 45 H 0.067 0.933 46 H 0.065 0.935 47 H 0.063 0.937 48 H 0.054 0.946 49 H 0.039 0.961 50 H 0.097 0.903 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 4.486 -8.644 15.253 18.096 hybrid contribution 0.308 0.489 -1.626 1.725 sum 4.794 -8.154 13.627 16.588 Atomic orbital electron populations 1.21714 0.93652 1.01884 1.03188 1.19913 0.96750 0.88204 1.03290 1.23305 1.01414 0.99080 0.88406 1.73787 1.17254 0.92602 1.23879 1.84769 1.62857 1.26775 1.22453 1.24231 1.01754 0.97915 0.83643 1.20147 0.99248 0.90297 0.98355 1.21782 0.97275 0.99272 1.02537 1.20189 1.08056 0.94076 0.95876 1.19863 0.95956 1.03718 0.90356 1.19981 0.89205 0.78838 0.80410 1.90703 1.52643 1.43737 1.54186 1.48264 1.15004 1.61509 1.09293 1.21801 0.84147 1.01166 0.92922 1.23155 0.98070 0.98706 0.94361 0.89151 1.21218 0.91286 0.90536 0.90958 1.44347 1.38444 1.06949 1.43233 1.19026 1.07685 0.95979 1.13401 0.90399 1.24817 0.98399 0.97524 0.99342 1.69964 1.29054 1.17260 1.40192 0.86139 0.78326 0.79417 0.82113 1.21589 1.21781 1.20630 1.21137 0.97081 0.88051 0.91737 1.22924 0.95732 0.98641 0.95751 0.89313 1.22135 0.93506 0.97407 0.88213 0.91563 0.91970 0.92577 0.89935 0.90295 0.89498 0.88683 0.92304 0.91289 0.91266 0.87655 0.87873 0.92429 0.90966 0.93288 0.93524 0.93675 0.94567 0.96090 0.90274 0.91671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 9.89 37.16 0.37 -1.23 16 2 C -0.04 -0.45 6.44 -27.88 -0.18 -0.63 16 3 C 0.04 0.49 6.58 -82.10 -0.54 -0.05 16 4 N -0.37 -5.43 12.07 33.42 0.40 -5.02 16 5 O 0.09 1.33 11.20 17.18 0.19 1.52 16 6 C -0.01 -0.15 6.74 -35.30 -0.24 -0.39 16 7 C -0.04 -0.43 6.35 -27.88 -0.18 -0.60 16 8 C -0.15 -1.74 9.89 37.16 0.37 -1.37 16 9 C -0.18 -2.28 4.81 -104.42 -0.50 -2.78 16 10 C -0.06 -0.67 5.06 -29.03 -0.15 -0.82 16 11 C 0.53 7.83 7.83 -10.98 -0.09 7.74 16 12 O -0.54 -9.67 15.36 5.56 0.09 -9.58 16 13 N -0.61 -9.05 3.31 -172.18 -0.57 -9.62 16 14 C 0.12 1.97 6.23 -3.57 -0.02 1.95 16 15 C -0.12 -2.06 4.01 -88.60 -0.36 -2.42 16 16 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 17 C 0.18 4.12 4.78 -3.32 -0.02 4.11 16 18 N -0.60 -14.10 3.39 -171.50 -0.58 -14.68 16 19 C -0.23 -6.09 10.24 -15.06 -0.15 -6.25 16 20 H 0.08 1.97 7.84 -52.49 -0.41 1.56 16 21 C 0.00 -0.11 5.48 -17.43 -0.10 -0.20 16 22 N -0.92 -25.83 10.30 55.49 0.57 -25.26 16 23 Si 0.91 21.26 29.56 -169.99 -5.02 16.24 16 24 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 25 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 26 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 27 C 0.15 2.66 6.41 -3.43 -0.02 2.64 16 28 C -0.11 -1.63 4.14 -88.26 -0.37 -1.99 16 29 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 30 C 0.11 1.50 5.88 -3.30 -0.02 1.48 16 31 H 0.07 0.87 7.76 -51.93 -0.40 0.47 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.08 0.71 7.66 -51.93 -0.40 0.31 16 35 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.09 0.85 7.44 -51.93 -0.39 0.46 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.07 1.00 7.53 -51.93 -0.39 0.61 16 41 H 0.11 1.05 7.45 -51.92 -0.39 0.67 16 42 H 0.10 0.94 7.40 -51.93 -0.38 0.56 16 43 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.07 1.32 7.44 -51.93 -0.39 0.93 16 45 H 0.05 1.25 7.27 -51.93 -0.38 0.87 16 46 H 0.05 1.18 6.73 -51.93 -0.35 0.83 16 47 H 0.25 6.98 8.31 -40.82 -0.34 6.65 16 48 H 0.04 0.63 7.97 -51.93 -0.41 0.21 16 49 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 50 H 0.08 1.25 7.76 -51.93 -0.40 0.85 16 51 H 0.06 0.68 7.61 -51.93 -0.40 0.28 16 LS Contribution 404.87 15.07 6.10 6.10 Total: -1.00 -31.79 404.87 -9.46 -41.25 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -8.45 Total: -0.11 kcal Atomic # 6 Polarization: 1.36 SS G_CDS: -2.18 Total: -0.83 kcal Atomic # 7 Polarization: -54.41 SS G_CDS: -0.18 Total: -54.59 kcal Atomic # 8 Polarization: -8.34 SS G_CDS: 0.28 Total: -8.06 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -31.79 -9.46 -41.25 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048867408.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.541 kcal (2) G-P(sol) polarization free energy of solvation -31.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.250 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds